BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25110.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894415 jgi|Araly1|894415|Al_scaffold_0006_2411 1938 0.0
> Ahg894415 jgi|Araly1|894415|Al_scaffold_0006_2411
Length=1443
Score = 1938 bits (1049), Expect = 0.0
Identities = 1304/1422 (92%), Gaps = 38/1422 (3%)
Strand=Plus/Plus
Query 175 ACAGTCGTTACCAATCGGCCCCTACAATGGAGGAAGAGCAACAACAACTTCGTGTTCTCT 234
||||||||||||||| |||||| || ||||| ||||| |||||||||||||| ||||| |
Sbjct 47 ACAGTCGTTACCAATTGGCCCCCACGATGGAAGAAGAACAACAACAACTTCGAGTTCTGT 106
Query 235 TCGCG-AAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGGAAAAGTTTATTAC 293
||| | |||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 107 TCG-GAAAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGCAAAAGTCTATTAC 165
Query 294 GGCAAAGAGATAACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAAAGATCAAG-- 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GGCAAAGAGATAACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAAAGATCAAGTC 225
Query 352 -TCAAACGTGAAGGTATGATGGAACAAATCAAACGAGAGATCTCAATCATGAGACTTGTT 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ATCAAACGTGAAGGTATGATGGAACAAATCAAACGAGAGATCTCAATCATGAGACTTGTT 285
Query 411 CGTCATCCAAACATCGTTGAGTTAAAAGAAGTCATGGCTACAAAAACAAAGATCTTCTTT 470
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 286 CGTCATCCAAACATCGTCGAATTAAAAGAAGTCATGGCAACAAAAACAAAGATCTTCTTC 345
Query 471 ATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGTTAAAGGAAAGCTTAAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGTTAAAGGAAAGCTTAAA 405
Query 531 GAAGACTCTGCTCGTAAGTATTTCCAACAATTAATCTCAGCCGTTGATTTTTGTCATAGT 590
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 406 GAAGACTCTGCTCGTAAGTACTTCCAACAATTAATCTCAGCCGTTGATTTTTGTCATAGT 465
Query 591 AGAGGCGTTTCTCACCGAGATCTAAAACCGGAGAATCTCTTAGTTGACGAGAACGGAGAT 650
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 466 AGAGGCGTGTCTCACCGAGATCTAAAACCGGAGAATCTCTTGGTCGACGAGAACGGTGAT 525
Query 651 CTTAAGGTTTCAGATTTTGGTCTCTCTGCTTTACCGGAACAGATTTTACAAGACGGTTTG 710
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 526 CTTAAGGTGTCCGATTTCGGTCTCTCTGCTTTACCTGAACAGATTTTACAAGACGGTTTG 585
Query 711 CTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCACCGGAGGTTTTGAGGAAGAAAGGT 770
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 586 CTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCGCCGGAGGTTTTGAGGAAGAAAGGT 645
Query 771 TACGACGGAGCTAAAGGTGATATTTGGTCGTGTGGTATTATCTTGTACGTGCTTCTCGCT 830
|||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 646 TACGACGGAGCTAAAGCTGATATTTGGTCGTGTGGTGTGATCTTGTACGTACTTCTCGCC 705
Query 831 GGATTCTTACCGTTTCAAGATGAGAACCTAATGAAAATGTATCGGAAGATCTTCAAATCG 890
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GGTTTTTTACCGTTTCAAGATGAGAACCTAATGAAAATGTATCGGAAGATCTTCAAATCG 765
Query 891 GAGTTTGAGTATCCGCCGTGGTTTTCACCGGAGTCCAAGAGGTTGATTTCAAAGCTTTTA 950
|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 766 GAGTTTGAGTTTCCGCCGTGGTTTTCACCGGAGTCCAAGAGATTGATTTCGAAGCTTTTA 825
Query 951 GTTGTTGATCCTAACAAACGGATCTCGATACCGGCGATTATGCGAACACCGTGGTTTCGT 1010
|||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 826 GTTGTTGATCCTAATAAACGGATCTCGATACCAGCGATTATGAGAACACCGTGGTTTCGT 885
Query 1011 AAAAACATCAACTCTCCGATCGAGTTCAAGATCGATGAGCTCGAGATCCAAAACGTAGAA 1070
|||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
Sbjct 886 AAAAACTTCAACTCTCCGATCGCTTTCAAGATCGATGAGCTCGAGAACCAGAACGTAG-A 944
Query 1071 GACGAaacaccaacaacaacagcaacaacagcaacaacaacaacaacaCCGGTCTCGCCG 1130
| | || | | |||| | ||||||||||||||||||||||||||
Sbjct 945 -A-G--------------AC-G--A-AACA-C--CAACAACAACAACACCGGTCTCGCCG 981
Query 1131 AAGTTCTTTAACGCGTTTGAATTCATCTCTTCTATGTCATCAGGATTTGATCTATCAAGT 1190
||||||||||||||||||||||||||||| || |||||||||||||| ||| | || |||
Sbjct 982 AAGTTCTTTAACGCGTTTGAATTCATCTCCTCGATGTCATCAGGATTCGATTTGTCGAGT 1041
Query 1191 TTGTTCGAGAGTAAGAGGAAGCTGAGATCTATGTTTACGTCACGGTGGTCGGCGTCGGAG 1250
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1042 TTGTTCGAGAACAAAAGGAAGCTGAGCTCTATGTTTACGTCACGGTGGTCGGCGTCGGAG 1101
Query 1251 ATAATGGGGAAGCTTGAAGGGATAGGGAAAGAGATGAATATGAAGGTGAAGAGGACTAAA 1310
||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1102 ATAATGGCGAAGCTTGAAAGGATAGGGAAAGAGATGAACATGAAGGTTAAGAGGACTAAG 1161
Query 1311 GACTTTAAGGTGAAGTTGTTTGGGAAAACGGAAGGGAGGAAAGGACAGATCGCGGTGACT 1370
|| ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1162 GATTTTAAAGTGAAGATGTTGGGGACAACGGAAGGGAGGAAAGGACAGATCGCGGTGACG 1221
Query 1371 GCTGAGGTTTTCGAGGTTGCGCCGGAAGTCGCCGTCGTTGAGTTGTGTAAGTCGGCGGGA 1430
|| ||||||||||||||||||||| | || |||||||||||||| ||||| |||||||||
Sbjct 1222 GCGGAGGTTTTCGAGGTTGCGCCGCAGGTTGCCGTCGTTGAGTTATGTAAATCGGCGGGA 1281
Query 1431 GATACTTTGGAGTATAATAGGTTGTATGAAGAACATGTCCGGCCAGCGTTGGAGGAGATA 1490
|||||||||||||||||| |||| || |||||||| |||||||| |||||||||||||||
Sbjct 1282 GATACTTTGGAGTATAATCGGTTATAAGAAGAACAAGTCCGGCCGGCGTTGGAGGAGATA 1341
Query 1491 GTGTGGTCGTGGCACGGTGATAATCATAATAATAATATTGTTA--AG-A-G--TAATG-- 1542
|| ||||||||||||||||||||||||||||| |||||||||| | | | ||||
Sbjct 1342 GTTTGGTCGTGGCACGGTGATAATCATAATAACAATATTGTTAGTAATAAGAATAATAAT 1401
Query 1543 GT-AATTATGTTAGTGATGAAAATTCTGGTAGTGACTGCTAA 1583
|| |||||| |||||||||| ||||||||||||||||| |||
Sbjct 1402 GTTAATTATATTAGTGATGATAATTCTGGTAGTGACTGTTAA 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5