BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25150.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489367 jgi|Araly1|489367|fgenesh2_kg.6__2501__AT5G25150.1 3374 0.0
> Ahg489367 jgi|Araly1|489367|fgenesh2_kg.6__2501__AT5G25150.1
Length=2183
Score = 3374 bits (1827), Expect = 0.0
Identities = 2069/2187 (95%), Gaps = 11/2187 (1%)
Strand=Plus/Plus
Query 1 ATCgagagagagagag-a--gag-aCAACAATGGATCCAGAGCAAATCAACGAGTTCGTC 56
|||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1 ATCGAGAGAGAGAGAGAAGCGAGAACAATAATGGATCCAGAGCAAATCAACGAGTTCGTT 60
Query 57 GTGGGCTACTTGAAGAAGAAAGGATTCAGTAGCGCTGCTAAAGACCTTGAATCTTATCAT 116
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 61 GTGGGTTACTTGAAGAAGAAAGGATTCAATAGCGCTGCTAAAGACCTTGAAGCTTATCAT 120
Query 117 CACCAGAACAATAATGGTAGCTCCTTCACTTCTGTCGATTATCATAACGATCCTGAGCTC 176
||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 121 CACCACAACAACAATGGTAGCAGTTTCACTTCTACCGATTATCATAACGATCCTGAGCTC 180
Query 177 ACGAAGCTCATTCGCTCCTTTTCTCAACAAGAAGATGATCCAACTCGGTACCGTGAAGGT 236
|| || ||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 181 ACCAAACTCATCCGCTCCTTTTCCCAACAAGAAGATGATCCTACTCGGTACCGTGAGGGT 240
Query 237 TACAGCAAACTAAGGTCATGGGCGTATAATTCTCTGGATTTATATAAGCATGAATTGCTT 296
|||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 241 TACAGCAATCTAAGGTCATGGGCTTATAATTCACTCGATTTATATAAGCATGAATTGCTT 300
Query 297 CGAGTGATGTATCCTGTGTTTATTCATTGTTACATGGATCTGGTGGGGAAAGGGCACACT 356
||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 301 CGAGTTATGTATCCTGTGTTTATTCATTGTTACATGGATTTGGTGGGAAAAGGGCACACT 360
Query 357 CAAGAAGCTAGAGCCTTCTTTAACAGCTTCCGCAAAGATCATGAGATGGTACACTTACGG 416
|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CAAGAAGCGAGAGGCTTCTTTAACAGCTTCCGCAGAGATCATGAGATGGTACACTTACGG 420
Query 417 GATCTTCAGAAGCTT-GAAGGCGTGCTTTCTCCATCTCATCTAGAGGAGATGGAGTTTGC 475
||||||||||| || ||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 421 GATCTTCAGAA-ATTGGAAGGTGTTCTTGCTCCATCTCATCTAGAGGAGATGGAGTTTGC 479
Query 476 TCGTTCTCTTAGAAAAAGCAAGGTTAACATCAAGTTTTGTCAGTATTCATATGAGCTGTT 535
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||
Sbjct 480 TCGTTCTCTTAGAAAAAGCAAGGTCAACATCAAGATTTCTCAGTATTCATATGATCTGTT 539
Query 536 ACTTCAGTATCTACATAGTACAGTATCGACTTTAATGCTTGGTATTATTAACGAGCACAT 595
| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 AATTCAGTATCTACAAAGGACAAAATCGACTTTAATGCTTGGTATTATTAACGAGCACAT 599
Query 596 CAATTTCCAAGTCTACTCGGGACAGCCTACTTCCTCATCCGATGACATAGAAGCTGTCAC 655
|||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 600 CAATTTCCAAGTCTACTCAGGACAACCTACTCCCTCATCCGATGACATAGAAGCTGTCAC 659
Query 656 CATTGTCGGGAGTTTTCAGGACACTGCTAATCACATTAATCAAAAAGAAATACAGTGGGG 715
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 CATTTTTGGGAGTTTTCAGGACACAGCTAATCACATTAATCAAAAAGAAATACAGTGGGG 719
Query 716 ATTGCTTGAAGATTCACTAGAAGATCGCCTTGAGAAGACAGGAGGTCTGCTGTCTGATTC 775
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTGCTTGAAGACTCGCTAGAAGATCGCCTTGAGAAGACAGGAGGTCTGCTGTCTGATTC 779
Query 776 TGAGAAGGGACAAGGAGAAAGTAAAGACGGGGATGCAGATGATAGTAAGAAAAGATCCAC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGAGAAGGGACAAGGAGAAAGTAAAGACGGGGATGCAGATGATAGTAAGAAAAGATCCAC 839
Query 836 TGAAATTGGAAAGCAAGGCTCTTCCTTAAAAAAGTTGAAGAAGGACAAAGCGGGTAATGC 895
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 840 TGAAATTGGAAAGCAAGGCTCTTCCTTAAAAAAGTTAAAGAAGGACAAAGCGGGAAATGC 899
Query 896 AACAGCAAAAGTTGCACGTCTGGAGACCATTACGGTGTCACCGGCGCCGCGTGTAAAACC 955
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 900 AACAGCAAAAGTTGCACGTCTGGAGACCATTACGGTGCCACCGGCCCCACGTGTAAAACC 959
Query 956 AGAACTTGCCTTGCCAGTAATGTCCACAGATGTAGAGCAATCCATCCTTGAAGACCTTAG 1015
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 960 AGAACTTGCCTTGCCAGTAATGTCTACAGACGTAGAGCAATCCATCCTTGAAGACCTGAG 1019
Query 1016 AAACCGTGTGCAGTTGAGTAGTGTTGCAATGCCATCAGTCAGCTTTTATACATTTGTGAA 1075
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1020 AAACCGTGTGCAGTTGAGCAGTGTCGCAATGCCTTCAGTCAGCTTTTATACATTTGTGAA 1079
Query 1076 TACTCATAACGGGTTAAACTGTTCATCTATATCTCATGATGGATCTCTGGTTGCTGGTGG 1135
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TACTCATAACGGGTTAAATTGTTCATCTATATCTCATGATGGATCTCTGGTTGCTGGTGG 1139
Query 1136 GTTCTCAGATTCTTCAATAAAGGTCTGGGACATGGCTAAGATAGGACAAGCTGGCAGTGG 1195
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTCTCAGATTCATCAATAAAGGTCTGGGACATGGCTAAGATAGGACAAGCTGGCAGTGG 1199
Query 1196 TGCTTTGCAGGCTGAAAATGATTCAAGTGATCAAAGCATAGGACCAAATGGCAGAAGAAG 1255
|| |||||||| |||||||||| ||| |||||||| || ||||||||||||||||||||
Sbjct 1200 TGTTTTGCAGGGTGAAAATGATACAAATGATCAAATTATGGGACCAAATGGCAGAAGAAG 1259
Query 1256 TTATACATTATTACTGGGTCATTCAGGGCCAGTTTACTCAGCCACTTTCAGTCCCCCTGG 1315
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1260 TTATACATTATTACTGGGTCACTCAGGGCCAGTTTACTCGGCCACTTTTAGTCCCCCTGG 1319
Query 1316 AGATTTTGTTCTATCTTCTTCAGCAGATACAACAATACGACTGTGGAGCACAAAACTAAA 1375
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 AGATTTTGTTCTATCTTCTTCAGCAGATACAACAATTCGACTGTGGAGCACAAAACTAAA 1379
Query 1376 TGCTAATCTCGTGTGCTACAAGGGTCATAATTACCCTGTATGGGATGCCCAGTTTAGCCC 1435
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 TGCCAATCTCGTGTGCTACAAGGGTCATAATTACCCTGTATGGGATGTCCAGTTTAGCCC 1439
Query 1436 TTTCGGTCATTACTTTGCAAGCTGTTCTCATGATCGTACTGCACGGATTTGGTCAATGGA 1495
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTTCGGTCATTACTTTGCAAGTTGTTCTCATGATCGTACTGCACGGATTTGGTCAATGGA 1499
Query 1496 CCGAATACAACCTCTTCGGATAATGGCAGGGCATCTATCTGATGTTGATTGTGTACAGTG 1555
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CCGAATTCAACCTCTTCGGATAATGGCAGGGCATCTATCTGATGTTGATTGTGTACAGTG 1559
Query 1556 GCATCCCAATTGTAACTACATTGCTACCGGTAGTAGTGATAAGACGGTTAGACTCTGGGA 1615
|||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||
Sbjct 1560 GCATCCCAATTGTAACTACATTGCAACCGGTTCTAGCGATAAGACGGTTAGACTGTGGGA 1619
Query 1616 TGTGCAAACTGGAGAATGTGTCCGGATATTCATTGGGCACAGGAGTATGGTTTTATCATT 1675
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1620 TGTGCAAACTGGGGAGTGTGTCCGGATATTCGTTGGGCACAGGAGTATGGTTTTATCATT 1679
Query 1676 GGCGATGTCTCCAGATGGGAGATATATGGCTTCCGGTGATGAAGATGGCACTATAATGAT 1735
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1680 GGCGATGTCTCCGGATGGGAGATATATGGCCTCCGGTGATGAAGATGGCACCATAATGAT 1739
Query 1736 GTGGGACCTCTCAACTGCTCGCTGCATCACTCCTCTCATGGGCCATAATTCATGTGTCTG 1795
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GTGGGACCTCTCAACAGCTCGCTGCATCACTCCTCTCATGGGCCATAATTCATGTGTCTG 1799
Query 1796 GAGTCTCTCATACAGCGGGGAGGGCTCTCTTCTGGCTTCTGGATCCGCAGACTGCACAGT 1855
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1800 GAGTCTCTCTTACAGCGGCGAGGGCTCTCTTCTGGCTTCTGGATCTGCAGACTGCACAGT 1859
Query 1856 GAAACTGTGGGACGTCACTTCAAGTACCAAATTGACAAAGGCCGAGGAAAAGAATGGAAA 1915
|||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||
Sbjct 1860 GAAACTGTGGGACGTCACCTCAAGTACCAAATTAACAAAGGCCGAGGCAAAGAATGGGAA 1919
Query 1916 CTCGAACAGATTGCGCTCACTCAGGACTTTCCCCACCAAGTCCACACCAGTTCACGCTCT 1975
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 CACCAACAGGTTGCGCTCACTCAGGACTTTCCCCACCAAGTCCACACCAGTTCACGCTCT 1979
Query 1976 CCGGTTTTCTCGGAGAAATTTGTTGTTTGCTGCAGGAGCGA-TCTCTAAACCCGCAAACT 2034
| | ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1980 CAGATTTTCTCGGAGAAATTTGTTGTTTGCTGCAGGAGC-ACTCTCTAAACCCGCAAGCT 2038
Query 2035 GATCAAAACAATGGTATCAGATATTGATGCTTTAACATTCTTACAAGCTGTT-GTAGATC 2093
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2039 GATCAAAACAATGGTATCAGATATTGATACTTTAACATTCATACAAGCTGTTTGTAGATC 2098
Query 2094 TCAGAAGAAATCAGGTGTAGAATAGTTATCTCCAAAGATTATTTGCTTGTGGCTTTTGTT 2153
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2099 --AGAAGAAATCAGGTGTAGAATAGTTATCTCCAAAGATTATTTGTTTGTGGCTTTTGTT 2156
Query 2154 TCTCATTTCTAAATCCCAAAAATGTTG 2180
||||||||||||||| |||| ||||||
Sbjct 2157 TCTCATTTCTAAATCACAAAGATGTTG 2183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5