BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25390.2

Length=982
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326806 jgi|Araly1|326806|fgenesh1_pm.C_scaffold_6002026           942    0.0  
  Ahg471733 jgi|Araly1|471733|fgenesh2_kg.1__1687__AT1G15360.1        75.0    1e-12


> Ahg326806 jgi|Araly1|326806|fgenesh1_pm.C_scaffold_6002026
Length=570

 Score =  942 bits (510),  Expect = 0.0
 Identities = 550/570 (96%), Gaps = 0/570 (0%)
 Strand=Plus/Plus

Query  162  ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCT  221
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  1    ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAACGTCAGTGGGGTTCTTGGGTCTCC  60

Query  222  GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA  120

Query  282  ACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACT  341
            ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||
Sbjct  121  ACAGCGGCTAGAGCCTATGACCAAGCCGCGATTCTAATGAACGGCCAGAACGCGAAGACT  180

Query  342  AACTTCCCCGTCATCAAATCGAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGG  401
            |||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||
Sbjct  181  AACTTCCCCGTCATCAAATCCAACGGTTCAGATTCCTTGGAGGTTAACTCTACGTTAAGG  240

Query  402  TCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG  461
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCTCCCAAATCATTGTCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG  300

Query  462  ACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAG  521
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  ACACCGTATCTGACGTGTCTCCGCCTAGACAACGACAGCTCACACATCGGCGTCTGGCAG  360

Query  522  AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAAA  581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  361  AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAGT  420

Query  582  GTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGAC  641
            |||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||
Sbjct  421  GTTAACGCACGTCCCGGTGGTGATATTGGGACTAATAAGATGAAGAAACGAAACGATGAC  480

Query  642  GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT  540

Query  702  CCTGGATCTGGATCCATTGCACAGGTCTAA  731
            ||||  ||||||||||||||||||||||||
Sbjct  541  CCTGCTTCTGGATCCATTGCACAGGTCTAA  570


> Ahg471733 jgi|Araly1|471733|fgenesh2_kg.1__1687__AT1G15360.1
Length=830

 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 68/81 (84%), Gaps = 4/81 (5%)
 Strand=Plus/Plus

Query  480  CTCCGCCTCGACAAC-GACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAA  538
            ||||| |||||| || | |||||| ||||||||||||||||||||||||||||| || ||
Sbjct  411  CTCCGTCTCGAC-ACGGCCAGCTCCCACATCGGCGTCTGGCAGAAACGCGCCGGTTCCAA  469

Query  539  AAC-GAGTCCAAACTGGGTCA  558
              | || ||||  ||||||||
Sbjct  470  GTCTGACTCCAG-CTGGGTCA  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36483631569


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5