BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25390.2 Length=982 Score E Sequences producing significant alignments: (Bits) Value Ahg326806 jgi|Araly1|326806|fgenesh1_pm.C_scaffold_6002026 942 0.0 Ahg471733 jgi|Araly1|471733|fgenesh2_kg.1__1687__AT1G15360.1 75.0 1e-12 > Ahg326806 jgi|Araly1|326806|fgenesh1_pm.C_scaffold_6002026 Length=570 Score = 942 bits (510), Expect = 0.0 Identities = 550/570 (96%), Gaps = 0/570 (0%) Strand=Plus/Plus Query 162 ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCT 221 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1 ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAACGTCAGTGGGGTTCTTGGGTCTCC 60 Query 222 GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA 120 Query 282 ACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACT 341 ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 121 ACAGCGGCTAGAGCCTATGACCAAGCCGCGATTCTAATGAACGGCCAGAACGCGAAGACT 180 Query 342 AACTTCCCCGTCATCAAATCGAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGG 401 |||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||| Sbjct 181 AACTTCCCCGTCATCAAATCCAACGGTTCAGATTCCTTGGAGGTTAACTCTACGTTAAGG 240 Query 402 TCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG 461 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTCCCAAATCATTGTCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG 300 Query 462 ACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAG 521 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 ACACCGTATCTGACGTGTCTCCGCCTAGACAACGACAGCTCACACATCGGCGTCTGGCAG 360 Query 522 AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAAA 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAGT 420 Query 582 GTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGAC 641 |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| Sbjct 421 GTTAACGCACGTCCCGGTGGTGATATTGGGACTAATAAGATGAAGAAACGAAACGATGAC 480 Query 642 GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT 540 Query 702 CCTGGATCTGGATCCATTGCACAGGTCTAA 731 |||| |||||||||||||||||||||||| Sbjct 541 CCTGCTTCTGGATCCATTGCACAGGTCTAA 570 > Ahg471733 jgi|Araly1|471733|fgenesh2_kg.1__1687__AT1G15360.1 Length=830 Score = 75.0 bits (40), Expect = 1e-12 Identities = 68/81 (84%), Gaps = 4/81 (5%) Strand=Plus/Plus Query 480 CTCCGCCTCGACAAC-GACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAA 538 ||||| |||||| || | |||||| ||||||||||||||||||||||||||||| || || Sbjct 411 CTCCGTCTCGAC-ACGGCCAGCTCCCACATCGGCGTCTGGCAGAAACGCGCCGGTTCCAA 469 Query 539 AAC-GAGTCCAAACTGGGTCA 558 | || |||| |||||||| Sbjct 470 GTCTGACTCCAG-CTGGGTCA 489 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36483631569 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5