BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25460.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942118 jgi|Araly1|942118|scaffold_602662.1 1796 0.0
Ahg487977 jgi|Araly1|487977|fgenesh2_kg.6__1111__AT5G11420.1 809 0.0
> Ahg942118 jgi|Araly1|942118|scaffold_602662.1
Length=1152
Score = 1796 bits (972), Expect = 0.0
Identities = 1093/1153 (95%), Gaps = 2/1153 (0%)
Strand=Plus/Plus
Query 46 TCTCGTTCTCTCTTCCGTCAATATGGAAGGCGTCACCGTCGTGTCTTTCTTCCTTCTTTT 105
|||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 1 TCTCTTTCTCTCTTCCGTCAAAATGGGGGGCGTCACCGTCGTGTCCTTCTTCCTTCTTTT 60
Query 106 CATCGCCACCGCCATGGCCGCCAAGTCCACCGTCTCCTTCCGTGACGGCATGTTACCAAA 165
|||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 61 CATCGCCACCGCAACCGCCGCTAAGTCCACCGTCTCGTTCCGTGACGGCATGTTACCAAA 120
Query 166 CGGAGACTTCGAGCTAGGACCAAAACCATCAGACATGAAAGGAACAGAAATACTAAACAA 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGAGACTTCGAGCTAGGACCAAAACCATCAGACATGAAAGGAACAGAAATACTAAACAA 180
Query 226 ACTAGCAATACCAAACTGGGAAGTCACAGGATTCGTCGAATACATTAAATCAGGACATAA 285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 ACTAGCAATACCAAACTGGGAAGTCACAGGATTCGTCGAGTACATTAAATCAGGACATAA 240
Query 286 ACAAGGAGACATGCTTCTCGTTGTTCCCGCCGGTAAATTCGCTGTAAGACTTGGGAACGA 345
||||||||||||||| ||||||||||| |||||||||||||| || | || || |||||
Sbjct 241 ACAAGGAGACATGCTGCTCGTTGTTCCGGCCGGTAAATTCGCAGTCCGGCTAGGAAACGA 300
Query 346 AGCATCGATCAAACAAAGACTTAAAGTGGTTAAAGGAATGTATTACTCACTCACTTTTAG 405
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 AGCATCGATCAAACAAAGACTTAAAGTGGTTAAAGGAATGTATTACTCGCTCACTTTTAG 360
Query 406 TGCTGCTAGAACTTGTGCACAAGACGAGAGACTTAACATATCTGTAGCACCTGACTCCGG 465
||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TGCTGCTAGGACTTGTGCTCAAGACGAGAGACTTAACATATCTGTAGCACCTAACTCCGG 420
Query 466 TGTGATTCCGATTCAGACGGTTTATAGTAGTAGTGGTTGGGATTTATATGCTTGGGCGTT 525
|||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 421 TGTGATTCCGGTTCAGACGGTTTATAGTAGTAGTGGGTGGGATTTGTATGCTTGGGCGTT 480
Query 526 TCAAGCTGAGAGTGATGTTGCTGAAGTTGTGATTCATAATCCTGGTGTTGAGGAAGATCC 585
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TCAAGCTGAGAGTGAAGTTGCTGAAGTTGTGATTCATAATCCTGGTGTTGAAGAAGATCC 540
Query 586 AGCTTGTGGTCCACTTATTGATGGTGTTGCTATGAGATCTCTTTACCCTCCTAGACCAAC 645
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 AGCTTGTGGTCCACTTATTGATGGTGTTGCTATGAGATCTCTTTACCCTCCTCGACCAAC 600
Query 646 TAATAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCATTAGTATTACCCGGCTC 705
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 601 TAATAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCATTAGTACTACCGGGCGC 660
Query 706 GACAACTGGAGTTTTGATCCCACCGTTTATAGAAGACGACCACTCTCCTTTACCTGGATG 765
|||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 661 GACAACGGGAGTTTTGATTCCACCGTTCATAGAAGATGACCACTCTCCTTTACCTGGCTG 720
Query 766 GATGGTGGAGTCTCTCAAAGCTGTCAAGTACGTAGACGTTGAACATTTCTCAGTCCCACA 825
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 721 GATGGTGGAGTCTCTCAAAGCTGTCAAGTACGTAGACATTGAGCATTTCTCAGTCCCACA 780
Query 826 GGGTCGCAGAGCTATTGAGCTTGTAGCGGGTAAAGAGAGTGCCATCGCTCAAGTGGTTCG 885
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 GGGTCGCCGAGCTATTGAGCTTGTAGCGGGTAAAGAGAGCGCCATCGCTCAAGTGGTTCG 840
Query 886 GACTGTCATTGGGAAGACTTACGTGCTGTCTTTTGCGGTTGGAGACGCCAACAATGCTTG 945
|| |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 841 TACCATCATTGGGAAAACTTACGTGCTTTCTTTTGCGGTTGGAGATGCCAACAACGCTTG 900
Query 946 CAAAGGATCAATGGTGGTTGAGGCTTTTGCAGGAAAAGATACACTTAAGGTCCCTTACGA 1005
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 901 CAAAGGATCAATGGTGGTTGAGGCTTTTGCGGGAAAAGAGACACTTAAGGTCCCTTACGA 960
Query 1006 GTCGA-AAGGCACAGGAGGGTTTAAACGAGCTTCTATTCGATTTGTGGCGGTTTCGACCC 1064
||| | ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 961 GTC-ACAAGGCACCGGAGGGTTTAAACGAGCTTCTATCCGGTTTGTGGCGGTTTCGAGCC 1019
Query 1065 GATCAAGAATTATGTTCTACAGCACTTTCTATGCCATGAGGAGCGATGATTTCTCGTCAT 1124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 GATCAAGAATTATGTTCTACAGCACTTTCTATGCCATGAGAAGCGATGATTTCTCGTCAT 1079
Query 1125 TGTGTGGGCCTGTGATCGATGATGTCAAGCTTATAAGCGTTCGTAAACCATAGATGAATC 1184
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTGCGGGCCTGTGATCGACGATGTCAAGCTTATAAGCGTTCGTAAACCATAGATGAATC 1139
Query 1185 ACCAATCCTATTA 1197
|| ||||||||||
Sbjct 1140 ACAAATCCTATTA 1152
> Ahg487977 jgi|Araly1|487977|fgenesh2_kg.6__1111__AT5G11420.1
Length=1444
Score = 809 bits (438), Expect = 0.0
Identities = 858/1060 (81%), Gaps = 31/1060 (3%)
Strand=Plus/Plus
Query 138 TCTCCTTCCGTGACGGCATGTTACCAAACGGAGACTTCGAGCTAGGACCAAAACCATCAG 197
||| |||| | ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 139 TCTGCTTCAGCGACGGGATGTTACCGAACGGTGACTTTGAGCTAGGACCAAAACCATCGG 198
Query 198 ACATGAAAGGAACAG-AAATACTAAACAAACTA-GCAATACCAAACTGGGAAG-TCACAG 254
||||||||||||| | || || ||||| || | || || || | ||||| || | |||
Sbjct 199 ACATGAAAGGAAC-GCAAGTAATAAAC-AAGAACGCGATTCCTAGCTGGG-AGCTTTCAG 255
Query 255 GATTCGTCGAATACATTAAA-TCAGGACATAAACAAGGAGACATGCTTCTCGTTGTTCCC 313
| ||||||||||||| |||| || || || ||||||||||||||||||||||| || ||
Sbjct 256 GCTTCGTCGAATACA-TAAAGTCCGGTCAAAAACAAGGAGACATGCTTCTCGTCGTACCG 314
Query 314 GCCGGTAAATTCGCTGTAAGACTTGGGAACGAAGCATCGATCAAACAAAGACTTAAAGTG 373
|| || |||||||| | | || || ||||| ||||||||||||||||||||||| ||
Sbjct 315 GCAGGAAAATTCGCAATCCGGCTAGGCAACGAGGCATCGATCAAACAAAGACTTAACGTT 374
Query 374 GTTAAAGGAATGTATTACTCACTCACTTTTAGTGCTGCTAGAACTTGTGCACAAGACGAG 433
|||||||||||||| |||||||| || ||||| || || || ||||| ||||||||
Sbjct 375 ACAAAAGGAATGTATTATTCACTCACGTTCAGTGCCGCAAGGACATGTGCCCAAGACGA- 433
Query 434 A-GACTTAACATATCTGTAGCACCTGACTCCGGTGTGATTCCGATTCAGACGGTTTATAG 492
| | || |||||||| || ||||||||||| ||||| ||||| || |||||||| || ||
Sbjct 434 ACGGCTCAACATATCGGTGGCACCTGACTCGGGTGTTATTCCTATACAGACGGTGTACAG 493
Query 493 TAGTAGTGGTTGGGATTTATATGCTTGGGCGTTTCAAGCTGAGAGTGATGTTGCTGAAG- 551
||| ||||| ||||| | || |||||||||||||| || ||||| | || || | ||
Sbjct 494 TAGCAGTGGATGGGACCTCTACGCTTGGGCGTTTCAGGCCAAGAGTAACGTGGCAG-AGA 552
Query 552 TTGTGATTCATAATCCTGGTGTTGAGGAAGATCCAGCTTGTGGTCCACTTATTGATGGTG 611
| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 553 TCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGACCACTTATTGATGGTG 612
Query 612 TTGCTATGAGATCTCTTTACCCTCCTAGACCAACTAATAAGAACATTTTGAAAAACGGAG 671
| || || | | |||| ||||||||| |||| || |||||||| || |||||||||||||
Sbjct 613 TCGCAATCAAAGCTCTCTACCCTCCTCGACCCACCAATAAGAATATATTGAAAAACGGAG 672
Query 672 GATTTGAAGAAGGTCCAT-TAGTATTACCCGG-CTCGACAACTGGAGTTTTGATCCCACC 729
|||||||||||||||| | | ||| | ||| | | ||||| || ||| || | || ||
Sbjct 673 GATTTGAAGAAGGTCCCTAT-GTACT-CCCAAACGCAACAACCGGCGTTCTGGTTCCTCC 730
Query 730 GTTTATAGAAGACGACCACTCTCCTTTACCTGGATGGATGGTGGAGTCTCTCAAAGCTGT 789
||||||||||| ||||||||||||||||||| |||||| | || || |||||||| |
Sbjct 731 CTTTATAGAAGATGACCACTCTCCTTTACCTGCTTGGATGATCGAATCACTCAAAGCCAT 790
Query 790 CAAGTACGTAGACGTTGAACATTTCTCAGTCCCACAGGGTCG-CAGAGCTATTGAGCTTG 848
||| ||||| || || ||||||||||| |||||||| || || | |||| | ||||| |
Sbjct 791 CAAATACGTTGATGTCGAACATTTCTCGGTCCCACAAGGCCGTC-GAGCCGTGGAGCTGG 849
Query 849 TAGCGGGTAAAGAGAGTGCCATCGCTCAAGTGGTTCGGACTGTCATTGGGAA-GACTTAC 907
| || || ||||| || || |||||||| |||| |||||| || | ||||| |||||||
Sbjct 850 TCGCAGGCAAAGAAAGCGCAATCGCTCAGGTGGCTCGGACCGTTGT-GGGAAAGACTTAC 908
Query 908 GTGCTGTCTTTTGCGGTTGGAGACGCCAACAATGCTTGCAAAGGATCAATGGTGGTTGAG 967
||||| || |||||||||||||| || ||||| |||||| ||||||| ||| | ||||||
Sbjct 909 GTGCTCTCGTTTGCGGTTGGAGATGCTAACAACGCTTGCCAAGGATCGATGATAGTTGAG 968
Query 968 GCTTTTGCAGGAAAAGATACACTT-AA-GGTCCCTTACGAGTCGAAAGGCACAGGAGGGT 1025
|| ||||| |||||||| ||||| || ||| ||||| |||||| ||| | |||||| |
Sbjct 969 GCATTTGCGGGAAAAGA--CACTTTAAAGGTACCTTATGAGTCGCGAGGGAAAGGAGGAT 1026
Query 1026 TTAAACGAGCTTCTATTCGATTTGTGGCGGTTTCGACCCG-ATCAAGAATTATGTTCTAC 1084
| ||||| || ||| | || |||||||||||||||||||| | |||| ||||||| |||
Sbjct 1027 TCAAACGCGCATCTCTGCGGTTTGTGGCGGTTTCGACCCGCA-CAAGGGTTATGTTTTAC 1085
Query 1085 AGCAC-TTTCTA-TGCCATGAGGAGCGATGATTTCTCGTCATTGTGTGGGCCTGTGATCG 1142
||||| ||| || | | ||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 1086 AGCACGTTT-TACT-CGATGAGAAGCGATGATTTCTCGTCGCTGTGTGGGCCCGTGATCG 1143
Query 1143 ATGATGTCAAGCTTATAAGCGTTCGTAAACCATA-GATGA 1181
||||||| ||||| | || | |||||| || || |||||
Sbjct 1144 ATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5