BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25610.1 Length=1560 Score E Sequences producing significant alignments: (Bits) Value Ahg489420 jgi|Araly1|489420|fgenesh2_kg.6__2554__AT5G25610.1 2422 0.0 Ahg925873 jgi|Araly1|925873|scaffold_201434.1 414 8e-115 > Ahg489420 jgi|Araly1|489420|fgenesh2_kg.6__2554__AT5G25610.1 Length=1557 Score = 2422 bits (1311), Expect = 0.0 Identities = 1483/1565 (95%), Gaps = 16/1565 (1%) Strand=Plus/Plus Query 1 TCATAACTTCAACCTCAGCTCCTTTCTACTAAAACCCTTTTACTATAAATTCTACGTACA 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCATAACTTCAACCTCAGCTGCTTTCTACTAAAACCCTTTTACTATAAATTCTACGTACA 60 Query 61 CGTACCACTTCTTCTCCTCAAATTCATCAAACCCATTTCTATTCCAACTCCCAAAAATGG 120 | | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 61 CTTGCCACTTCTTCTCCTCAAATTCATCAAACCCATTTCAATTCCAACCCCCAAAAATGG 120 Query 121 CGATTCGTCTTCCTCTGATCTGTCTTCTTGGTTCATTCATGGTAGTGGCGATTGCGGCTG 180 | |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| Sbjct 121 CTATTCGTCTTCCTGTGATCTGTCTTCTTGGTTCATTCATGGTCGTAGCGATTGCGGCTG 180 Query 181 ATTTAACACCGGAGCGTTATTGGAGCACTGCTTTACCAAACACTCCCATTCCCAACTCTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATTTAACACCGGAGCGTTATTGGAGCACTGCTTTACCAAACACTCCCATTCCCAACTCTC 240 Query 241 TCCATAATCTTTTGACT-TTCGATTTTACCGACGAGAAAAGTACCAACGTCCAAGTAGGT 299 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCATAATCTTTTGACTCTT-GATTTTACCGACGAGAAAAGTACCAACGTCCAAGTAGGT 299 Query 300 AAAGGCGGAGTAAACGTTAACACCCATAAAGGTAAAACCGGTAGCGGAACCGCCGTGAAC 359 |||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||| Sbjct 300 AAAGGCGGCGTAAACGTTAACGCCCATAAAGGTAAACCCGGCGGCGGAACCGCCGTGAAC 359 Query 360 GTTGGAAAGGGAGGTGTACGCGTGGACACAGGCAAGGGCAAGCCCGGAGGAGGGACACAC 419 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 360 GTTGGAAAGGGAGGTGTACGCGTGGACACGGGCAAGGGTAAGCCCGGAGGAGGGACACAC 419 Query 420 GTGAGCGTTGGCAGCGGAAAAGGTCACGGAGGTGGCGTCGCAGTCCACACGGGTAAACCC 479 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTAGCGTTGGCAGCGGAAAAGGTCACGGAGGTGGCGTCGCAGTCCACACGGGTAAACCC 479 Query 480 GGTAAAAGAACCGACGTAGGAGTCGGTAAAGGCGGTGTGACGGTGCACACGCGCCACAAG 539 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGTAAGAGAACCGACGTAGGAGTCGGTAAAGGCGGTGTGACGGTGCACACGCGCCACAAG 539 Query 540 GGAAGACCGATTTACGTTGGTGTGAAACCAGGAGCAAACCCTTTCGTGTATAACTATGCA 599 |||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||| Sbjct 540 GGAAGACCTATTTACGTCGGTGTGAAACCAGGAGCCAACCCTTTCGTATATAACTATGCA 599 Query 600 GCGAAGGAGACTCAGCTCCACGACGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGAC 659 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 600 GCAAAGGAGACTCAGCTCCACGATGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGAC 659 Query 660 TTGGTTCGC-GGGAAAGAAATGAATGTCCGGTTTAACGCTGAGGATGGTTACGGAGGCAA 718 ||||||| | || |||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 660 TTGGTTC-CTGGAAAAGCTATGAACGTCCGGTTTAACGCGGAGGATGGTTACGGAGGCAA 718 Query 719 AACTGCGTTCTTGCCACGTGGAGAGGCTGAAACGGTGCCTTTTGGATCGGAGAAGTTTTC 778 ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 719 AACTGCGTTCTTGCCACGTGGAGAGGCGGAAACGGTGCCGTTTGGGTCGGAGAAGTTTTC 778 Query 779 GGAGACGTTGAAACGTTTCTCGGTGGAAGCTGGTTCGGAAGAAGCGGAGATGATGAAGAA 838 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 779 GGAGACGTTGAAACGTTTCTCTGTGGAAGCTGGTTCGGAAGAAGCGGAGATGATGAAGAA 838 Query 839 GACCATTGAGGAGTGTGAAGCCAGAAAAGTTAGTGGAGAGGAGAAGTATTGTGCGACGTC 898 ||| ||||| ||||||||||| | |||||| ||||||| |||||||||||||||||||| Sbjct 839 GACGATTGACGAGTGTGAAGCGAAAAAAGTCGGTGGAGAAGAGAAGTATTGTGCGACGTC 898 Query 899 TTTGGAGTCGATGGTCGACTTTAGTGTTTCGAAACTTGGTAAATATCACGTCAGGGCTGT 958 | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 899 TCTGGAGTCGATGGTCGATTTTAGTGTTTCGAAACTTGGGAAATATCACGTCAGGGCTGT 958 Query 959 TTCCACTGAGGTGGCTAAGAAGAACGCACCGATGCAGAAGTACAAAATCGCGGCGGCTGG 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TTCCACTGAGGTGGCTAAGAAGAACGCACCGATGCAGAAGTACAAAATCGCGGCGGCTGG 1018 Query 1019 GGTAAAGAAGTTGTCTGACGATAAATCTGTGGTGTGTCACAAACAGAAGTACCCATTCGC 1078 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 1019 GGTAAAGAAGTTGTCTGACGACAAATCGGTGGTGTGTCACAAACAGAAGTACCCATTTGC 1078 Query 1079 GGTGTTCTACTGCCACAAGGCGATGATGACGACCGTCTACGCGGTTCCGCTCGAGGGAGA 1138 ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1079 TGTGTTCTACTGTCACAAGGCGATGATGACGACCGTCTACGCGGTTCCACTAGAAGGAGA 1138 Query 1139 GAACGGGATGCGAGCTAAAGCAGTTGCGGTATGCCACAAGAACACCTCAGCTTGGAACCC 1198 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1139 GAACGGGATGCGAGCTAAAGCAGTTGCGGTGTGCCACAAGAACACCTCAGCGTGGAACCC 1198 Query 1199 AAACCACTTGGCCTTCAAAGTC-TTAAAGGTGAAGCCAGGGACCGTTCCGGTCTGCCACT 1257 |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||| Sbjct 1199 AAACCACTTGGCCTTCAAAGTCCTTAA-GGTGAAGCCAGGAACCGTTCCCGTCTGCCACT 1257 Query 1258 TCCTCCCGGAGACTCATGTTGTGTGGTTCAGCTACTAGATAGATCTGTTTTCTATCTTAT 1317 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1258 TCCTCCCGGAGTCTCATGTTGTGTGGTTCAGCTACTAGATAGATCTGTTGTCTATCTT-T 1316 Query 1318 TGTGGGTTAT--GTATAATTACGTTTCAGATAATCTATCTTTTGGGATGTTTTGGTTATG 1375 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TGTGGGTTATATGTATAATTACGTTTCAGATAATCTATCTTTTGGGATGTTTTGGTTATG 1376 Query 1376 AATATACATACATATACATATAGTAATGCGTGGTTTCCATATAAGAGTGAAGGCATCTAT 1435 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AAGATACATACATATACATATAGTAATGCGTGGTTTCCATATAAGAGTGAAGGCATCTAT 1436 Query 1436 ATGtttttttttttATTAACCTACGTAGCTGTCTTTTGTGGTCTG-TATCTTGTGGTTTT 1494 |||||| |||||| | ||||||||||||||||||||||||| || | ||||||| |||| Sbjct 1437 ATGTTTCTTTTTTAAA-AACCTACGTAGCTGTCTTTTGTGGTTTGCT-TCTTGTGTTTTT 1494 Query 1495 GCAA-AAACCTATAATAAAATTAGAGCTGAAATGTTACCATTTCTATGTTTTG-GCTTAA 1552 |||| ||| |||||||||||||||| |||||||||||||||||||||||||| | | || Sbjct 1495 GCAAGAAAA-TATAATAAAATTAGAGTTGAAATGTTACCATTTCTATGTTTTGAG-TCAA 1552 Query 1553 TTGAC 1557 ||||| Sbjct 1553 TTGAC 1557 > Ahg925873 jgi|Araly1|925873|scaffold_201434.1 Length=640 Score = 414 bits (224), Expect = 8e-115 Identities = 268/289 (93%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 1011 GCGGCTGGGGTAAAGAAGTTGTCTGACGATAAATCTGTGGTGTGTCACAAACAGAAGTAC 1070 ||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| Sbjct 335 GCGGC-GGGGTCAAGAAGTTGTCGGACGACAAGTCGGTGGTGTGTCACAAACAGAAGTAT 393 Query 1071 CCATTCGCGGTGTTCTACTGCCACAAGGCGATGATGACGACCGTCTACGCGGTTCCGCTC 1130 || |||||||||||||||||||| ||||| |||||||| | ||| ||||||||||| || Sbjct 394 CCGTTCGCGGTGTTCTACTGCCATAAGGCTATGATGACCAGCGTTTACGCGGTTCCACTA 453 Query 1131 GAGGGAGAGAACGGGATGCGAGCTAAAGCAGTTGCGGTATGCCACAAGAACACCTCAGCT 1190 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 454 GAAGGAGAGAACGGGATGCGAGCTAAAGCAGTTGCGGTGTGCCACAAGAACACCTCAGCT 513 Query 1191 TGGAACCCAAACCACTTGGCCTTCAAAGTC-TTAAAGGTGAAGCCAGGGACCGTTCCGGT 1249 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 514 TGGAACCCAAACCACTTGGCCTTCAAAGTCCTTAA-GGTGAAGCCAGGGACCGTTCCGGT 572 Query 1250 CTGCCACTTCCTCCCGGAGACTCATGTTGTGTGGTTCAGCTACTAGATA 1298 ||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 573 CTGCCACTTCCTCCCGGAGACCCATGTTGTGTGGTTCACCTACTAGATA 621 Score = 108 bits (58), Expect = 2e-22 Identities = 92/108 (85%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 607 AGACTCAGCTCCACGACGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGACT-TGGTT 665 |||||||||||||||| ||||||||||||||||||||||||||||||||||| | || || Sbjct 233 AGACTCAGCTCCACGATGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGA-TATGTTT 291 Query 666 CGCGGGAAA-GAAATGAATGTCCGGTTTAACGCTGAGGATGGTTACGG 712 | | ||||| | ||||| | |||||||| || ||||| |||| ||| Sbjct 292 C-CTGGAAAAGCTATGAACCTTCGGTTTAATGCAGAGGACGGTTGCGG 338 Score = 97.1 bits (52), Expect = 3e-19 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 96 TTTCTATTCCAACTCCCAAAAATGGCGATTCGTCTTCCTCTGATCTGTCTTCTTGGTTCA 155 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1 TTTCTATTCTAACTCCCAAAAATGGCGATTCGTCTTCCTTTGATCTGTCTTCTTGTTTCA 60 Query 156 TTCA 159 ||| Sbjct 61 GTCA 64 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58430435830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5