BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25770.3 Length=1597 Score E Sequences producing significant alignments: (Bits) Value Ahg894498 jgi|Araly1|894498|Al_scaffold_0006_2494 1696 0.0 Ahg942151 jgi|Araly1|942151|scaffold_602695.1 462 3e-129 > Ahg894498 jgi|Araly1|894498|Al_scaffold_0006_2494 Length=1209 Score = 1696 bits (918), Expect = 0.0 Identities = 1025/1078 (95%), Gaps = 2/1078 (0%) Strand=Plus/Plus Query 421 TATGGAATCGCCGATTACTCAACCCCAAATGTTTAGATTGCAGTTTCTTCGTCTTCTTCA 480 |||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||| Sbjct 123 TATGGAATCGCCGATTACTCAAGCCCAAATGTTTAGATCGGAGTTTCTTCGTCTGCTTCA 182 Query 481 TAGTCGACGATCACCCCAAGTTCCATTAATAGCCGATTCTTCAAATCCTATCGAGAATCC 540 ||||||||||||||| ||||||||||||||||| |||||||||||||| |||| || || Sbjct 183 GAGTCGACGATCACCCAAAGTTCCATTAATAGCCAATTCTTCAAATCCTGTCGAAAACCC 242 Query 541 TCTCTTTCAAGCTGATGTTCCTTCTACCACAGCAATAGAGTCTTGTCCAAAAGAAAACAT 600 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 243 TCTCTTTCAAGCTGATGTTCCTTCTACAAAAGCAATAGAGTCTTGTCCAAAAGAAAACAT 302 Query 601 TGGTAAGTTAAAAGATATGCTTAAAGAAGAAAACATTCATTTGCACACTGAGGATTCAGA 660 |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 303 TGGTAACTTAAAAGAAATGCTTAAAGAAGAAAACCTTCATTTGCACACTGAGGATTCAGA 362 Query 661 GCAAGGGAAATTACCTTTGCTTATTTTAAGCTTGAAAGAGAGAAGTGAAGAAAAAAGGCC 720 |||||||||||||||||| ||||||||||||||||||||||| | | |||||| |||||| Sbjct 363 GCAAGGGAAATTACCTTTACTTATTTTAAGCTTGAAAGAGAGGACTAAAGAAAGAAGGCC 422 Query 721 AGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGGCCATGGCTTGA 780 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 423 AGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGACCATGGCTTGA 482 Query 781 AGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGTTACCACGGTGAACG 840 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 483 AGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGGTACCACGGTGAACG 542 Query 841 TGCTGATTGCAAAACTGCATATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACAC 900 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TGCTGATTGCACAACTGCCTATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACAC 602 Query 901 TATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCA 960 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 AATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCA 662 Query 961 GAGGGATGATATAGACCCGAAAAAGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCA 1020 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 663 GAGGGATGATATAGACCCGAAAAGGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCA 722 Query 1021 TGCTTGGTTTGCTGCTGCAGCTGACACTCGCTATTCCGTGGTTGTCCCATTAATCGGTGT 1080 |||||||||||||||||||||||| || ||||||||||||| |||||| || |||||||| Sbjct 723 TGCTTGGTTTGCTGCTGCAGCTGATACCCGCTATTCCGTGGCTGTCCCTTTGATCGGTGT 782 Query 1081 TCAGGGTTTTAGATGGGCAATAGAGAATGATGAGTGGGAAGCAAGAGTCAACAGTATCAA 1140 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 783 CCAGGGATTTAGATGGGCAATAGACAATGATGAGTGGGAAGCAAGAGTCAACAGTATAAA 842 Query 1141 ACCTTTATTTGAAGAAGCAAGGATTGATCTCGGAAAGAACATAATCGACAAAGAACTAGT 1200 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || Sbjct 843 ACCTTTATTTGAAGAAGCAAGGATCGATCTCGGAAAGAATGTAATCGACAAAGAACTGGT 902 Query 1201 CGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCGAAGTTTGATTCACCGTACTC 1260 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| Sbjct 903 CGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCTAAGTTCGATTCGCCTTACTC 962 Query 1261 ATTACCAGTGATTGCTCCACGGCCTCTTTACATCCTTAACGGCGCAAATGATCCTCGATG 1320 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 963 ATTACCAGTGATTGCTCCGCGGCCTCTTTACATCCTTAATGGCGCAAATGATCCTCGATG 1022 Query 1321 TCCTCTTGGCGGACTAGAACTTGCGTTAAAGAGAGCTGA-AAAGGCGTATAAGGAAACAG 1379 ||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||| | Sbjct 1023 TCCTCTTGGCGGACTAGAAGTTCCGTTAAAGAGAGCTGAGAAAG-CGTATAAGGAAACTG 1081 Query 1380 CTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGACACGAAGCGACGAGTT 1439 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1082 CTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGGCACGAAGTGACGAGTT 1141 Query 1440 TCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAACAAGAAGATATGAC 1497 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1142 TCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAAGAAGAAGATATGAC 1199 > Ahg942151 jgi|Araly1|942151|scaffold_602695.1 Length=409 Score = 462 bits (250), Expect = 3e-129 Identities = 278/292 (95%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 1206 AGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCGAAGTTTGATTCACCGTACTCATTAC 1265 |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| Sbjct 88 AGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCTAAGTTTGATTCGCCTTACTCATTAC 147 Query 1266 CAGTGATTGCTCCACGGCCTCTTTACATCCTTAACGGCGCAAATGATCCTCGATGTCCTC 1325 ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 148 CAGTGATTGCTCCGCGGCCTCTTTACATCCTTAACGGAGCAAAAGATCCTCGATGTCCTC 207 Query 1326 TTGGCGGACTAGAACTTGCGTTAAAGAGAGCTGAAAAGGCGTATAAGGAAACAGCTTCTC 1385 |||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||| Sbjct 208 TTGGCGGACTAGAAGTTCCGTTAAAGAGAGCTGAGAAGGCGTATAAGGAAACTGCTTCTC 267 Query 1386 CTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGACACGAAGCGACGAGTTTCATGA 1445 ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 268 CTGAAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGGCACGAAGTGACGAGTTTCATGA 327 Query 1446 TCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAACAAGAAGATATGAC 1497 |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 328 TCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAAGAAGAAGATATGAC 379 Score = 104 bits (56), Expect = 2e-21 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1012 AGGGATGCATGCTTGGTTTGCTGCTGCAGCTGACACTCGCTATTCCGTGGTTGTCCCATT 1071 ||||||||||||||||||||||||||||||| | || |||||||| |||| |||||| || Sbjct 17 AGGGATGCATGCTTGGTTTGCTGCTGCAGCTAATACCCGCTATTCTGTGGCTGTCCCTTT 76 Query 1072 AATCGGTGTTCAGG 1085 |||||||||||||| Sbjct 77 AATCGGTGTTCAGG 90 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839774895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5