BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25840.1

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942164 jgi|Araly1|942164|scaffold_602708.1                        894    0.0  


> Ahg942164 jgi|Araly1|942164|scaffold_602708.1
Length=564

 Score =  894 bits (484),  Expect = 0.0
 Identities = 536/562 (95%), Gaps = 0/562 (0%)
 Strand=Plus/Plus

Query  49   AAAGACCACATATCCTTCCAATGGCCCCCCTTCAACGCACCATCTCGGATATTTCACACC  108
            ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  1    AAAGATCACATATCCTTCCAATGGCCCCCCTTCAACGCACAATCTCTGATATTTCACACC  60

Query  109  AAATTTCAATAGACAACACTCTAACAAAAGAACCATCTCCAACCGCAACCGCAACAACTT  168
            |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  61   AAATATCCATAGACAACACTCTAACAAAAGAACCATCTCCAACCGGAACCGCAACAACTT  120

Query  169  TGTTATCCTTATCAGCGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT  228
            |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGTTGTCCTTATCAACGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT  180

Query  229  CTGAAGAGTGCACGCCGGAGTACATACACCGTGTGCGTTCAAAATTCTCAGGGAAGCTGA  288
            |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||
Sbjct  181  CTGAAGAGTGCACGCCGGAGTACATACACCGTGTACGTTCAAAATTTTTAGGGAAGTTGA  240

Query  289  TTTGCGGGCTGTGCGAAAAAGCGGTGGAGGGGGAGATGGAGAAGATGAACAACAGTGAAG  348
            ||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||| |
Sbjct  241  TTTGCGGGCTGTGTGAAAAGGCAGTGGAGGAGGAGATGGAGAAGATGATCAACAGTGATG  300

Query  349  TGCTGATGGAGAAGCGGCGAGAAGAGGCAGTGAAGGTACACATGAGCGCATGTTCCCGGT  408
            || || | |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct  301  TGGTGGTAGAGAAGCGGCGAGAAGAGGCAGTGAAGGCACATATGAGCGCATGTTCCCGGT  360

Query  409  TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC  468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC  420

Query  469  TGAAAAAGAGGTCTAAGAAGATGGTTGGAGCCACCAAGCCTGAAAAAGGTGGCCTCGCTA  528
            |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  421  TGAAGAAGAGATCTAAGAAGATGGTTGGAGCCACCAAGCCGGAAAAAGGTGGCCTCGCTA  480

Query  529  GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT  588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT  540

Query  589  AGCTTATTTGTATACTCACGTA  610
            ||||||||||||||||||||||
Sbjct  541  AGCTTATTTGTATACTCACGTA  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28592187750


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5