BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25840.1 Length=775 Score E Sequences producing significant alignments: (Bits) Value Ahg942164 jgi|Araly1|942164|scaffold_602708.1 894 0.0 > Ahg942164 jgi|Araly1|942164|scaffold_602708.1 Length=564 Score = 894 bits (484), Expect = 0.0 Identities = 536/562 (95%), Gaps = 0/562 (0%) Strand=Plus/Plus Query 49 AAAGACCACATATCCTTCCAATGGCCCCCCTTCAACGCACCATCTCGGATATTTCACACC 108 ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1 AAAGATCACATATCCTTCCAATGGCCCCCCTTCAACGCACAATCTCTGATATTTCACACC 60 Query 109 AAATTTCAATAGACAACACTCTAACAAAAGAACCATCTCCAACCGCAACCGCAACAACTT 168 |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 AAATATCCATAGACAACACTCTAACAAAAGAACCATCTCCAACCGGAACCGCAACAACTT 120 Query 169 TGTTATCCTTATCAGCGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 228 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGTTGTCCTTATCAACGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 180 Query 229 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTGCGTTCAAAATTCTCAGGGAAGCTGA 288 |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||| Sbjct 181 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTACGTTCAAAATTTTTAGGGAAGTTGA 240 Query 289 TTTGCGGGCTGTGCGAAAAAGCGGTGGAGGGGGAGATGGAGAAGATGAACAACAGTGAAG 348 ||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||| | Sbjct 241 TTTGCGGGCTGTGTGAAAAGGCAGTGGAGGAGGAGATGGAGAAGATGATCAACAGTGATG 300 Query 349 TGCTGATGGAGAAGCGGCGAGAAGAGGCAGTGAAGGTACACATGAGCGCATGTTCCCGGT 408 || || | |||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 301 TGGTGGTAGAGAAGCGGCGAGAAGAGGCAGTGAAGGCACATATGAGCGCATGTTCCCGGT 360 Query 409 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 420 Query 469 TGAAAAAGAGGTCTAAGAAGATGGTTGGAGCCACCAAGCCTGAAAAAGGTGGCCTCGCTA 528 |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 421 TGAAGAAGAGATCTAAGAAGATGGTTGGAGCCACCAAGCCGGAAAAAGGTGGCCTCGCTA 480 Query 529 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 540 Query 589 AGCTTATTTGTATACTCACGTA 610 |||||||||||||||||||||| Sbjct 541 AGCTTATTTGTATACTCACGTA 562 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28592187750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5