BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25980.2
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489446 jgi|Araly1|489446|fgenesh2_kg.6__2580__AT5G26000.1 1652 0.0
Ahg326853 jgi|Araly1|326853|fgenesh1_pm.C_scaffold_6002073 361 1e-98
> Ahg489446 jgi|Araly1|489446|fgenesh2_kg.6__2580__AT5G26000.1
Length=1731
Score = 1652 bits (894), Expect = 0.0
Identities = 1490/1766 (84%), Gaps = 87/1766 (5%)
Strand=Plus/Plus
Query 33 AACCATGAAGCTTCTTGGGTTCGCCTTAGCTATTCTATTAGTTGTGGCGACTTGCAAACC 92
||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 1 AACCATGAAGCTTCTCGGGTTCGCCTTAGCTATTCTATTAGCTGTGGCGACTTGTAAAGC 60
Query 93 TGAAGAAGAGATTACTTGCGAAGAGAACGTTCCATTCACATGTAG-CCAAAC-AGATCGT 150
| |||||| ||||||| ||||| |||| |||||||||||| | |||||| | | | |
Sbjct 61 T---GAAGAGTTTACTTGTGAAGAAAACGAGCCATTCACATGT-GACCAAACTA-AACTT 115
Query 151 TTCAACA--AACAAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACC 208
||||||| | || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 116 TTCAACAGTGGC-AG-TTTCGAAAAAGACTTCATTTTCGGTGTTGCATCTTCTGCTTACC 173
Query 209 AGATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACC 268
|| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 AGGTGGAAGGCGGCAGAGGTCGTGGACTTAACATTTGGGATGGCTTCACTCACCGATACC 233
Query 269 CAGAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATAC-CGGACT 327
||||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
Sbjct 234 CAGAGAAAGGTGGAGCCGATTTGGGGAATGGAGACACTACTTGTGACTCATATACGAA-T 292
Query 328 TGGCAGAAAGATCTAGACGTGATGGAAGAGCTTGGA-GTTAAAGGCTACAGATTCTCCTT 386
|||||||||||| |||||||||| || || || | | || ||||||||||| |||||
Sbjct 293 TGGCAGAAAGATATAGACGTGATTGACGAACTCA-ACGCTACTGGCTACAGATTTTCCTT 351
Query 387 TGCGTGGTCAAGAATCCTTCCAAAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTAT 446
||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 352 TGCATGGTCAAGAATCCTTCCAAAAGGAAAGAGGAGTAGGGGAGTGAACGAAGGTGGTAT 411
Query 447 TAACTACTACAGCGGTCTCATAGATGGC-CTGATCGCAAGGAACATAACGCCTTTCGTTA 505
||||||||||| |||||||||| || | | |||||||||||| ||||||||||||||||
Sbjct 412 TAACTACTACAACGGTCTCATAAATAACAC-GATCGCAAGGAATATAACGCCTTTCGTTA 470
Query 506 CACTCTTTCACTGGGACCTTCCTCAATCATTGCAAGATGAATATGAA-GGTTTCTTGGAC 564
| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||
Sbjct 471 CCCTCTTTCACTGGGACCTTCCTCAAACATTGCAAGATGAATAT-AACGGTTTCTTGAAC 529
Query 565 AGAACGATCATAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTT-GGTGA 623
||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| |||||
Sbjct 530 AGAACGATCATAGACGATTTCAAGGATTATGCGGATCTATGTTTCGA-ACTTTTTGGTGA 588
Query 624 TAGAGTAAAGCACTGGATCACCATCAACCAGCTTTTCACAGTGCCTACGAGAGGCTATGC 683
||| |||||| |||||||||| |||||||| || | |||||| ||||||||||| |||||
Sbjct 589 TAGGGTAAAGAACTGGATCACGATCAACCAACTATACACAGTTCCTACGAGAGGATATGC 648
Query 684 ATTGGGAACAGATGCACCCGGTCGATGTTC-CCAATGGGTGGATAAAAGATGTTACGGTG 742
| |||||||||||||||||||||||||||| || ||| || | ||||||| ||| |
Sbjct 649 ACTGGGAACAGATGCACCCGGTCGATGTTCTCCTATGATTG-ACGAAAGATGCCCCGGCG 707
Query 743 GAGATTCTTCCACCGAACCCTATATCGTTGCGCATAACCAGCTTCTTGCTCATGCCA-CG 801
|| |||| || || ||||| ||| ||||||| ||||||||||||||||||||||| | ||
Sbjct 708 GAAATTCGTCAACAGAACCATATCTCGTTGCACATAACCAGCTTCTTGCTCATGC-AGCG 766
Query 802 GTCGTTGATCTATACAGGACGAGATATAAGTA---CCAAGGAGGGAAGATTGGACCTGTG 858
| ||||||| | |||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 767 GCCGTTGATGTTTACAGGACGAAATATAAGCAGGACCAAGGAGGGAAGATTGGACCTGTG 826
Query 859 ATGATAACTAGATGGTTTCTACCATATGATGACACTC-TAGAGAGCAAACAAGCAACTTG 917
|||||||||||||||||||| |||||||||||||||| | ||||| || | |||||| |
Sbjct 827 ATGATAACTAGATGGTTTCTTCCATATGATGACACTCCT-GAGAGTAATGAGGCAACT-G 884
Query 918 -GAGGGCCAAAGAATTCTTCT-TGGGATGGTTCATGGAGCCGCTAACA-AAGGGTAAATA 974
| |||| |||||||| ||| ||| ||||||||||| |||||||||| |||| ||||||
Sbjct 885 AGCGGGCTAAAGAATTTTTCCATGG-ATGGTTCATGGGGCCGCTAACAGAAGG-TAAATA 942
Query 975 CCCATACATCATGAGGAAACTTGTTGGTAATCGGCTTCCAAAGTTCAACAGCA-CAGAAG 1033
|||| ||||||||||| ||||||||||| | ||||||||| ||||||| | | ||||||
Sbjct 943 CCCAGACATCATGAGGGAACTTGTTGGTGAGCGGCTTCCAGAGTTCAAT-GAAACAGAAG 1001
Query 1034 CTCGCCTTT-TAAAGGGTTCATATGATTTTCTTGGTCTCAACTATTACGTCACTCAATAC 1092
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1002 CT-GCCCTTGTAAAGGGTTCATATGATTTTCTTGGTCTCAACTATTACGTCACTCAGTAC 1060
Query 1093 GCCCACGCCCTTGACCCAA--GT-CCTCCGGAAAAACTCACTGCCATGACGGACTCACTC 1149
||||| |||| | | || |||||||| || ||||||||||| ||| |||| |
Sbjct 1061 GCCCAAAATAATGACACGATTGTTCCTCCGGACGTACACACTGCCATGATGGATTCACGC 1120
Query 1150 GCAAAC-CTTACATCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGTTCTCTAAAGG 1208
|||| | || |||||| |||||| |||||| ||||||||||||||||| | |||
Sbjct 1121 GCAA-CTCTCACATCTAGAAATGCAACTGGTCATGCCCCTGGTCCACCGTTCAATGCAGG 1179
Query 1209 CAGTTATTACCACCCAAGAGGGATGTTAA-ACGTAATGGAGCACTTCAAAACCAAATACG 1267
|||||||||| |||||| ||| || ||| ||||||||||| ||||||||| ||||||||
Sbjct 1180 CAGTTATTACTACCCAAAAGGCAT-TTACTACGTAATGGAGTACTTCAAAAACAAATACG 1238
Query 1268 GTGACCCTTTAATCTATGTCACCGAGAACGGA-TTCAGTACCTCCGGTGGCCCCATACCC 1326
||||||||||||| ||| |||||||||||||| || |||||| |||||| || ||
Sbjct 1239 GTGACCCTTTAATATATATCACCGAGAACGGAATT-AGTACCCCCGGTGATGA-AT-CCT 1295
Query 1327 TTCACCGAAGCAT-TT-CACGATTACAACCGGATTGATTATCTCTGCAGTCATCTATGTT 1384
|| || || || | || | ||||||||| |||||||||||||| || |||||||| ||||
Sbjct 1296 TTGAC-GAGGC-TCTTGC-CGATTACAAGCGGATTGATTATCTATGTAGTCATCTCTGTT 1352
Query 1385 TTCTCCGCAAGGCCATCAAGGAGAAG-CGTGTCAACGTGAAAGGATACTTTGTTTGGTCT 1443
||||| | || | ||||||||||||| | ||||||||||||||||||||||| |||| ||
Sbjct 1353 TTCTCAGTAAAGTCATCAAGGAGAAGGC-TGTCAACGTGAAAGGATACTTTGCTTGGGCT 1411
Query 1444 CTTGGGGATAATTACGAATTCTGCAACGGCTACACCGTCAGATTCGGACTTAGTTACGTT 1503
||||||||||||||||||||| | ||||| | ||||||||||||||||| |||||| ||
Sbjct 1412 CTTGGGGATAATTACGAATTCGGTAACGGATTTACCGTCAGATTCGGACTAAGTTACATT 1471
Query 1504 GATTTCAATAATGTCACTGCTGATAGAGACCTCAAAGCTTCTGGCTTATGGTACCAGTCG 1563
|||||| |||||||||| |||||||||||||||||| ||||| |||||||||| |
Sbjct 1472 GATTTCGCCAATGTCACTGGTGATAGAGACCTCAAAGCATCTGGAAAATGGTACCAGAAG 1531
Query 1564 TTCTTGAGA-GATACCACC-A--A------GAACCAAGATATCCTCCGCTCAAG--TCTG 1611
||| | | | | |||||| | | |||||||||| | ||||||||||| |||
Sbjct 1532 TTCATAA-ATGTTACCACTGAGGACTCTACGAACCAAGATCTACTCCGCTCAAGCGTCT- 1589
Query 1612 CCCTTTAAGAACGGGGATAGGAAGAGCCT--CA----CATGAAAGACCAAAACCACTTTA 1665
|| || |||||| | ||| ||||||| || || |||||||| || |||||||| ||
Sbjct 1590 CC-TTCAAGAACCGTGATCGGAAGAGTCTTGCAGATGCATGAAAGGCCCAAACCACTATA 1648
Query 1666 TGCCCATCGAGATCATCTTCATGTCT-CTTCTTTCTACTTGCTCCATAGATAAAAGGAGC 1724
|||||| | |||||||||| |||| | | | |||||||||||||||||||||| || ||
Sbjct 1649 TGCCCACCAAGATCATCTTTATGT-TACCTGTTTCTACTTGCTCCATAGATAAG-GG-GC 1705
Query 1725 TT---CTACCTACTGTATTAAA-TAA 1746
|| |||| || ||||||||| |||
Sbjct 1706 TTTTTCTACGTAATGTATTAAAATAA 1731
> Ahg326853 jgi|Araly1|326853|fgenesh1_pm.C_scaffold_6002073
Length=450
Score = 361 bits (195), Expect = 1e-98
Identities = 226/241 (94%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 1408 AAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAATTACGAATTCTGC 1467
|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 211 AAGCGTGTCAACGTGAAAGGATACTTTGCTTGGGCTCTTGGGGATAACTACGAATTCTGC 270
Query 1468 AACGGCTACACCGTCAGATTCGGACTTAGTTACGTTGATTTCAATAATGTCACTGCTGAT 1527
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 271 AACGGCTTCACCGTCAGATTCGGACTTAGTTACGTTGACTTCAATAATGTCACTGCTGAT 330
Query 1528 AGAGACCTCAAAGCTTCTGGCTTATGGTACCAGTCGTTCTTGAGAGATACCACCAAGAAC 1587
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 331 AGAGACCTCAAAGCATCTGGCTTATGGTACCAGTCGTTCTTAAGAGATACCACCAAGAAC 390
Query 1588 CAAGATATCCTCCGCTCAAGTCTGC-CCTTTAAGAACGGGGATAGGAAGAGCCTCACATG 1646
|||||| ||||||||||||| || | |||| |||||| | ||||||||||||||| ||||
Sbjct 391 CAAGATCTCCTCCGCTCAAGCCT-CTCCTTCAAGAACCGTGATAGGAAGAGCCTCGCATG 449
Query 1647 A 1647
|
Sbjct 450 A 450
Score = 174 bits (94), Expect = 2e-42
Identities = 118/129 (91%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 1209 CAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAGCACTTCAAAACCAAATACGG 1268
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 57 CAGTTATTACCACCCAAGAGGCATGCTAAACGTAATGGAGCACTTCAAAACCAAATACGG 116
Query 1269 TGACCCTTTAATCTATGTCACCGAGAACGGA-TT--CAGTACCTCCGGTGGCCCCATACC 1325
||||||||| |||||||||||||| |||||| || ||||||| |||||||| ||||||
Sbjct 117 TGACCCTTTGATCTATGTCACCGAAAACGGAATTATCAGTACCGCCGGTGGCGACATACC 176
Query 1326 CTTCACCGA 1334
||| |||||
Sbjct 177 CTTTACCGA 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5