BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26000.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489446 jgi|Araly1|489446|fgenesh2_kg.6__2580__AT5G26000.1 2355 0.0
> Ahg489446 jgi|Araly1|489446|fgenesh2_kg.6__2580__AT5G26000.1
Length=1731
Score = 2355 bits (1275), Expect = 0.0
Identities = 1588/1740 (91%), Gaps = 18/1740 (1%)
Strand=Plus/Plus
Query 34 AACCATGAAGCTTCTTATGCTCGCCTTTGTTTTTCTATTAGCTTTGGCGACTTGTAAAGG 93
||||||||||||||| | ||||||| | | ||||||||||| |||||||||||||||
Sbjct 1 AACCATGAAGCTTCTCGGGTTCGCCTTAGCTATTCTATTAGCTGTGGCGACTTGTAAAGC 60
Query 94 TGACGAGTTTGTTTGTGAAGAGAACGAGCCATTCACATGTAACCAAACTAAACTTTTCAA 153
||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 61 TGAAGAGTTTACTTGTGAAGAAAACGAGCCATTCACATGTGACCAAACTAAACTTTTCAA 120
Query 154 CAGTGGCAATTTCGAAAAAGGCTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGGTGGA 213
|||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGGCAGTTTCGAAAAAGACTTCATTTTCGGTGTTGCATCTTCTGCTTACCAGGTGGA 180
Query 214 AGGCGGTAGAGGCCGTGGACTTAACGTTTGGGATAGCTTCACTCACCGATTCCCAGAGAA 273
|||||| ||||| |||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 181 AGGCGGCAGAGGTCGTGGACTTAACATTTGGGATGGCTTCACTCACCGATACCCAGAGAA 240
Query 274 AGGTGGAGCTGATTTGGGAAATGGAGACACTACTTGTGACTCATATACTCTTTGGCAGAA 333
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AGGTGGAGCCGATTTGGGGAATGGAGACACTACTTGTGACTCATATACGAATTGGCAGAA 300
Query 334 AGATATAGACGTGATGGACGAGCTCAACTCTACTGGCTACAGATTCTCCATTGCGTGGTC 393
||||||||||||||| ||||| |||||| |||||||||||||||| ||| |||| |||||
Sbjct 301 AGATATAGACGTGATTGACGAACTCAACGCTACTGGCTACAGATTTTCCTTTGCATGGTC 360
Query 394 AAGACTCCTTCCAAAAGGAAAGAGGAGCAGGGGAGTGAACCCAGGAGCTATTAAGTACTA 453
|||| |||||||||||||||||||||| |||||||||||| ||| | |||||| |||||
Sbjct 361 AAGAATCCTTCCAAAAGGAAAGAGGAGTAGGGGAGTGAACGAAGGTGGTATTAACTACTA 420
Query 454 CAACGGTCTCATAGATGGCCTCG-TCGCAAAGAATATGACGCCCTTT-GTTACCCTCTTT 511
||||||||||||| || | || |||||| |||||| ||| ||||| ||||||||||||
Sbjct 421 CAACGGTCTCATAAAT-AACACGATCGCAAGGAATATAACG-CCTTTCGTTACCCTCTTT 478
Query 512 CATTGGGACCTTCCTCAAACACTACAAGATGAATATAACGGTTTCTTGAACAAAACGATC 571
|| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 479 CACTGGGACCTTCCTCAAACATTGCAAGATGAATATAACGGTTTCTTGAACAGAACGATC 538
Query 572 GTAGACGATTTCAAGGATTACGCGGATCTATGTTTCG-AGTTATTTGGTGATAGGGTAAA 630
||||||||||||||||||| |||||||||||||||| | || |||||||||||||||||
Sbjct 539 ATAGACGATTTCAAGGATTATGCGGATCTATGTTTCGAACTT-TTTGGTGATAGGGTAAA 597
Query 631 GAACTGGATCACCATCAACCAGCTATACACAGTGCCTACTAGAGGATATGCATTGGGAAC 690
|||||||||||| |||||||| ||||||||||| ||||| |||||||||||| |||||||
Sbjct 598 GAACTGGATCACGATCAACCAACTATACACAGTTCCTACGAGAGGATATGCACTGGGAAC 657
Query 691 AGATGCACCCGGTCGATGTTCTCCTAAGATTGACGTTAGATGTCCCGGCGGAAATTCGTC 750
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 658 AGATGCACCCGGTCGATGTTCTCCTATGATTGACGAAAGATGCCCCGGCGGAAATTCGTC 717
Query 751 AACAGAACCCTATATTGTTGCACATAACCAGCTTCTTGCTCATGCAGCGGCCGTTGATGT 810
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AACAGAACCATATCTCGTTGCACATAACCAGCTTCTTGCTCATGCAGCGGCCGTTGATGT 777
Query 811 TTACAGGACGAAATATAAGGATGACCAAAAAGGTATGATTGGACCAGTGATGATAACTAG 870
||||||||||||||||||| | |||||| ||| | ||||||||| ||||||||||||||
Sbjct 778 TTACAGGACGAAATATAAGCAGGACCAAGGAGGGAAGATTGGACCTGTGATGATAACTAG 837
Query 871 ATGGTTTCTTCCATTTGATCATAGTCAAGAGAGCAAAGATGCAACTGAGCGGGCTAAA-A 929
|||||||||||||| |||| | | || ||||| || || |||||||||||||||||| |
Sbjct 838 ATGGTTTCTTCCATATGATGACACTCCTGAGAGTAATGAGGCAACTGAGCGGGCTAAAGA 897
Query 930 TATTTTTCCATGGATGGTTCATGGGGCCTCTAACAGAAGGTAAATACCCAGACATCATGA 989
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 898 -ATTTTTCCATGGATGGTTCATGGGGCCGCTAACAGAAGGTAAATACCCAGACATCATGA 956
Query 990 GGGAA-TATGTTGGTGATCGGCTTCCAGAGTTCAGTGAAACAGAAGCCGCACTTGTAAAG 1048
||||| | ||||||||| |||||||||||||||| |||||||||||| || |||||||||
Sbjct 957 GGGAACT-TGTTGGTGAGCGGCTTCCAGAGTTCAATGAAACAGAAGCTGCCCTTGTAAAG 1015
Query 1049 GGTTCATATGATTTTCTTGGTCTCAACTATTACGTCACTCAATACGCCCAAAATAATCAG 1108
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1016 GGTTCATATGATTTTCTTGGTCTCAACTATTACGTCACTCAGTACGCCCAAAATAATGAC 1075
Query 1109 ACGATTGTTCCTTCGGACGTACACACTGCCTTGATGGACTCACGCACAACTCTCACATCT 1168
|||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1076 ACGATTGTTCCTCCGGACGTACACACTGCCATGATGGATTCACGCGCAACTCTCACATCT 1135
Query 1169 AAAAATGCAACTGGTCATGCTCCTGGTCCACCGTTCAATGCAGCCAGTTACTACTACCCA 1228
| |||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 1136 AGAAATGCAACTGGTCATGCCCCTGGTCCACCGTTCAATGCAGGCAGTTATTACTACCCA 1195
Query 1229 AAAGGCATTTACTACGTAATGGATTACTTCAAAACCACTTACGGTGACCCTTTAATATAT 1288
||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 1196 AAAGGCATTTACTACGTAATGGAGTACTTCAAAAACAAATACGGTGACCCTTTAATATAT 1255
Query 1289 GTCACTGAGAATGGATTTAGTACCCCAGGTGATGAGGACTTTGA-GAAGGCTACT-GCCG 1346
|||| ||||| ||| |||||||||| |||||||| |||||| || |||| || ||||
Sbjct 1256 ATCACCGAGAACGGAATTAGTACCCCCGGTGATGAATCCTTTGACGA-GGCT-CTTGCCG 1313
Query 1347 ATTACAAGCGGATTGATTATCTCTGTAGTCATCTCTGTTTCCTCAGTAAAGTCATCAAGG 1406
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1314 ATTACAAGCGGATTGATTATCTATGTAGTCATCTCTGTTTTCTCAGTAAAGTCATCAAGG 1373
Query 1407 AGAAGAATGTCAACGTGAAAGGATATTTTGCTTGGTCTCTTGGGGATAATTACGAATTCT 1466
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1374 AGAAGGCTGTCAACGTGAAAGGATACTTTGCTTGGGCTCTTGGGGATAATTACGAATTCG 1433
Query 1467 GTAACGGATTTACCGTCAGATTCGGACTAAGTTACGTTGATTTCGCAAATATCACTGGTG 1526
||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||
Sbjct 1434 GTAACGGATTTACCGTCAGATTCGGACTAAGTTACATTGATTTCGCCAATGTCACTGGTG 1493
Query 1527 ATAGAGACCTCAAAGCATCTGGCAAATGGTTCCAGAAGTTCATAAACGTTACCGAC-GAA 1585
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||| || ||
Sbjct 1494 ATAGAGACCTCAAAGCATCTGGAAAATGGTACCAGAAGTTCATAAATGTTACC-ACTGAG 1552
Query 1586 GACTCTACGAACCAAGATCTACTCCGCTCAAGCGTCTCCTCCAAGAACCGTGATCGGAAG 1645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1553 GACTCTACGAACCAAGATCTACTCCGCTCAAGCGTCTCCTTCAAGAACCGTGATCGGAAG 1612
Query 1646 AGTCTTGCAGATGCATGAAATATCCAATCCACTATATGTCCACCAAGATCATCTTCATGT 1705
|||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||||
Sbjct 1613 AGTCTTGCAGATGCATGAAAGGCCCAAACCACTATATGCCCACCAAGATCATCTTTATGT 1672
Query 1706 TTCCTCTTTCTACTTGCTCCATAGATAAGGAGCTTTTTCTACCATA-TGTATTAAAATAA 1764
| ||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1673 TACCTGTTTCTACTTGCTCCATAGATAAGGGGCTTTTTCTACG-TAATGTATTAAAATAA 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5