BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26040.2 Length=1366 Score E Sequences producing significant alignments: (Bits) Value Ahg489451 jgi|Araly1|489451|fgenesh2_kg.6__2585__AT5G26040.2 1927 0.0 > Ahg489451 jgi|Araly1|489451|fgenesh2_kg.6__2585__AT5G26040.2 Length=1277 Score = 1927 bits (1043), Expect = 0.0 Identities = 1149/1201 (96%), Gaps = 4/1201 (0%) Strand=Plus/Plus Query 5 aaaaaaaTATCTCACCGCTTCAGACCAAAAACT-A-ATGACACATACCCGAGTCATCTCG 62 |||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||| Sbjct 2 AAAAAAATATCTCACCGCTTCAGACCAAAACCTCATATGACAGATACCCGAGTCATCTCG 61 Query 63 ACCTGGACCGAGTTAACTCGCGACTTAGCTATTTACTTGCTCTTCACGTTTTTCGCAATC 122 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 62 ACCTGGACCGAGTTAACTCGCGACTCAGCTATTTACTTGCTCTTCACGTTTTTCGCCATC 121 Query 123 AAAGTCTTCAAATTTCTCTTCTCCTGTAATCGAACCTCTGAAATATCATCGTTTTCGATG 182 ||||||| || ||||||||||| |||||||||||| |||||| | ||||||||||||||| Sbjct 122 AAAGTCTACATATTTCTCTTCTGCTGTAATCGAACATCTGAATTGTCATCGTTTTCGATG 181 Query 183 GCGACTCATCCCGAAGCTCTCCGACGAGAGCGAATTCTCAACAGTAAACTCTACTTCGAC 242 ||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||| Sbjct 182 GCGACTCATCCCGAAGCTCTCCGGCGAGAACGAATTATCAACAGCAAACTCTACTTCGAC 241 Query 243 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGTCTTATGATATCTCGTTCATGGGT 302 |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| Sbjct 242 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGGCGTATGATATTTCGTTCATGGGT 301 Query 303 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 361 Query 363 TCAGATGGGTTTCTGGAGGAGAAAGCAATTGTTGAGCCTCTTGAAGCTTCAAAGATTGAT 422 |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 362 TCAGATGGGTTTTTGGAGGAGAAAGCAATTATTGAGCCTCTTGAAGCTTCAAAGAATGAT 421 Query 423 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGCAGTGCCACTGTCGCT 482 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 422 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGTAGTGCCACTGTTGCT 481 Query 483 AGGATCACCGAGGTTGCACCAGTTGCGTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 542 ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 482 AGGATAACCGAGGTTCCACCAGTTGCCTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 541 Query 543 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTTGCAACAGAA 602 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 542 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTCGCAACAGAA 601 Query 603 CGTGGATGGGCGATAAACATTGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGGC 662 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 602 CGTGGATGGGCAATAAACATTGGAGGAGGTTTTCATCATTGTACTGCGGAAAGAGGAGGC 661 Query 663 GGGTTTTGTGCTTTCGCTGATATTTCTCTCTGTATTCACTTTGCGTTTCTTCGTCTGAGA 722 || ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| || Sbjct 662 GGATTTTGTGCTTTTGCTGATATTTCTCTTTGTATTCACTTTGCATTTCTTCGTCTGCGA 721 Query 723 ATCTCGAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 782 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 ATCTCCAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 781 Query 783 CTCGGCGATGACAACCGTGTTTACATTTTGGATATGTACAATCCCGAGATATACCCTTTC 842 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 782 CTCGGCGATGACAACCGCGTTTACATTCTGGATATGTACAATCCCGAGATATACCCTTTC 841 Query 843 GATTATAGAGCTAGGAGATTTATCGATCAGAA-AGTTGAGGTCATGAGCGGGACGACCAC 901 |||||||||||||||||||||||||| ||||| | |||||||| |||||||||| ||||| Sbjct 842 GATTATAGAGCTAGGAGATTTATCGACCAGAACA-TTGAGGTCGTGAGCGGGACCACCAC 900 Query 902 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 960 Query 962 GGAGTTGGTAATTTACAATGCTGGCACAGACATATTAGATGGTGACCCTCTGGGACTTCT 1021 |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 961 GGAGTTGGTAATTTACAATGCTGGGACAGATATATTAGACGGTGACCCTCTGGGACTTCT 1020 Query 1022 AAAGATAAGCCCCGATGGCATAACAAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1081 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1021 AAAGATAAGCCCCGATGGCATAACGAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1080 Query 1082 GAAAAATATTCCTCTTGTGATGCTAACCTCAGGCGGGTACATGAAGTCAAGCGCTAGAGT 1141 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 1081 GAAAAATATTCCTCTTGTGATGCTAACTTCAGGTGGGTACATGAAGTCAAGCGCCAGAGT 1140 Query 1142 TATTGCGGATTCCATTGAGAATCTCTCACGGCAAGGGTTGATCCAGACACGACCGGAATA 1201 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1141 TATTGCGGATTCCATTGAGAATCTCTCACGTCAAGGGTTAATCCAGACACGACCGGAATA 1200 Query 1202 A 1202 | Sbjct 1201 A 1201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51122831697 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5