BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26110.1 Length=1261 Score E Sequences producing significant alignments: (Bits) Value Ahg315080 jgi|Araly1|315080|fgenesh1_pm.C_scaffold_2000113 1048 0.0 Ahg924634 jgi|Araly1|924634|scaffold_200195.1 961 0.0 > Ahg315080 jgi|Araly1|315080|fgenesh1_pm.C_scaffold_2000113 Length=681 Score = 1048 bits (567), Expect = 0.0 Identities = 644/682 (94%), Gaps = 2/682 (0%) Strand=Plus/Plus Query 249 ATGGATTGTGAGGAAAACGTTAGGG-ATGAATCACTCGTTTTGATTAAACAAGGAGCAGA 307 ||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||||||| || Sbjct 1 ATGGATTGTGAGGAAAACGTT-GGGAATGAATCGCTCGTTCTGATAAAACAAGGAGCGGA 59 Query 308 AGCTAGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTC 367 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 60 AGCTAGGGTGTTTGAGTCTACATTTGCTGGAAGAAGATCCATTGTGAAAGAACGATTCTC 119 Query 368 GAAGAAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGA 427 ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 120 GAAGAAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGA 179 Query 428 AGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGT 487 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 180 GGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGT 239 Query 488 GGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATAT 547 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct 240 GGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACAT 299 Query 548 TTTCCTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCA 607 ||||||||| |||||| |||||||| || |||||||||| |||||||||||||||||||| Sbjct 300 TTTCCTTGACTTTGGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCA 359 Query 608 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCAC 667 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || Sbjct 360 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTAC 419 Query 668 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAG 727 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATCGATTTTGGCTTGAG 479 Query 728 CGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTT 787 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 480 TGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTGCTTGAAAGAGCCTT 539 Query 788 ACTCTCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAA 847 ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 540 ACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGAA 599 Query 848 GTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAG 907 |||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| || Sbjct 600 GTCCTCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGTAG 659 Query 908 AAAGCGGACTATGATTGGATGA 929 ||| |||||||||||||||||| Sbjct 660 AAAACGGACTATGATTGGATGA 681 > Ahg924634 jgi|Araly1|924634|scaffold_200195.1 Length=710 Score = 961 bits (520), Expect = 0.0 Identities = 586/619 (95%), Gaps = 0/619 (0%) Strand=Plus/Plus Query 312 AGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTCGAAG 371 |||||||| |||||||||||| | |||||||||||||| ||||||||||| ||||||||| Sbjct 72 AGGGTGTTTGAGTCTACATTTACCGGAAGAAGATCCATTGTGAAAGAACGATTCTCGAAG 131 Query 372 AAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGAAGCT 431 ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 132 AAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGAGGCT 191 Query 432 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGTGGAT 491 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 192 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGTGGAT 251 Query 492 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATATTTTC 551 |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 252 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATTTTC 311 Query 552 CTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCAGATT 611 ||||| |||||| |||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 312 CTTGACTTTGGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCAGATT 371 Query 612 GGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCACATCA 671 ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 372 GGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTACATCA 431 Query 672 AATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAGCGTC 731 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 432 AATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATCGATTTTGGCTTGAGTGTC 491 Query 732 ACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTC 791 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 492 ACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTGCTTGAAAGAGCCTTACTC 551 Query 792 TCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAAGTCC 851 ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 552 TCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGAAGTCC 611 Query 852 TCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAGAAAG 911 || |||||||||||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 612 TCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGGAGAAAA 671 Query 912 CGGACTATGATTGGATGAG 930 ||||||||||||||||||| Sbjct 672 CGGACTATGATTGGATGAG 690 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119925412 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5