BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26120.1 Length=2208 Score E Sequences producing significant alignments: (Bits) Value Ahg489456 jgi|Araly1|489456|fgenesh2_kg.6__2590__AT5G26120.1 1951 0.0 > Ahg489456 jgi|Araly1|489456|fgenesh2_kg.6__2590__AT5G26120.1 Length=2237 Score = 1951 bits (1056), Expect = 0.0 Identities = 1228/1312 (94%), Gaps = 8/1312 (1%) Strand=Plus/Plus Query 816 AAATGACCTTTTCCAAATGATGGTCGATCTAAAACCGCGGTTT-ATCCGATTCCCGGGTG 874 |||||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||||| Sbjct 931 AAATGATCTTTTCCAAATGATGGTTGATCTAAAACCGC-GTTTCATCCGATTCCCGGGTG 989 Query 875 GTTGTTTTGTGGAGGGTGATTGGTTAGGCAATGCATTCCGCTGGAAAGAAACCGTGAGAG 934 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 990 GTTGTTTTGTGGAGGGTGAATGGTTAGGCAATGCATTCCGCTGGAAAGAAACCGTGGGAG 1049 Query 935 CTTGGGAAGAGAGACCTGGCCATTATGGTGATGTTTGGAAGTACTGGACTGATGATGGCC 994 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1050 CTTGGGAAGAGAGACCTGGCCATTATGGCGATGTTTGGAAGTACTGGACTGATGATGGCC 1109 Query 995 TTGGCCACTTTGAATTCTTTCAACTTGCAGAAGACCTTGGTGCATCCCCAATATGGGTGT 1054 |||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 1110 TTGGTCACTTTGAATTCTTTCAACTTGCAGAAGACATTGGTGCAGCCCCAGTATGGGTGT 1169 Query 1055 TTAACAATGGGATCAGTCACAATGATCAAGTTGAAACAAAAAATGTCATGCCTTTTGTTC 1114 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1170 TTAACAATGGGATCAGTCACAATGATCAAGTTGAAACAGAAAATGTCAAGCCTTTTGTTC 1229 Query 1115 AAGAAGCGATTGACGGTATAGAGTTTGCTCGTGGAGATTCTAATTCTACATGGGGATCGG 1174 ||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||| Sbjct 1230 AAGAAGCGATTGACGGTATAGAGTTTGCTCGCGGAGATCCTCAGTCTACATGGGGATCGG 1289 Query 1175 TTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTTGGGAATG 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1290 TTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTCGGGAATG 1349 Query 1235 AAGATTGTTTTAAGAGTTACTACAGAGGAAACTATCTTGAATTCTATAATGCTATCAAAA 1294 |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 1350 AAGATTGTTTTAAGAGTTACTACAGAGGAAACTATCTTGAGTTTTATGATGCTATCAAAA 1409 Query 1295 AAGCTTATCCAGATATTAAAATCATCTCCAACTGCGATGCATCGGCTAAACCGCTCGATC 1354 ||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1410 AAGCTTATCCAGACATCAAAATCATCTCCAACTGCGATGCATCGTTTAAGCCGCTCGATC 1469 Query 1355 ACCCGGCCGATTACTTTGATTACCACATTTACACTCTTGC-AAGAGACTTGTTTTCCAAG 1413 |||| || || |||||||||||||||||||| |||||||| ||| || |||||||||| | Sbjct 1470 ACCCTGCTGACTACTTTGATTACCACATTTATACTCTTGCAAAG-GATTTGTTTTCCAGG 1528 Query 1414 TCCCATGATTTTGACAATACACCGCGAAACGGTCCAAAGGCTTTTGTTAGCGAATACGCT 1473 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1529 TCCCATGACTTTGACAATACACCGCGCAACGGTCCAAAGGCTTTTGTTAGCGAGTACGCT 1588 Query 1474 GTAAACAAAGCAGATGCTAAAAATGGCAACCTTTTGGCCGCTCTTGGTGAAGCAGCTTTC 1533 ||||||||| | |||||||| ||||| |||||||||||||||||||| |||||||| ||| Sbjct 1589 GTAAACAAAACGGATGCTAATAATGGAAACCTTTTGGCCGCTCTTGGGGAAGCAGCCTTC 1648 Query 1534 CTCCTTGGTTTGGAAAAGAACAGTGACATTGTAGAAATGGTTAGCTATGCACCTCTCTTT 1593 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1649 CTCCTTGGTTTGGAAAAGAACAGTGACATTGTAGGAATGGTTAGCTATGCACCTCTCTTT 1708 Query 1594 GTCAACACAAACGATAGAAGGTGGATCCCTGATGCAATAGTTTTTAACTCGTCTCATCTA 1653 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1709 GTCAACACAAATGATAAAAGGTGGATCCCTGATGCAATAGTTTTTAACTCGTCTCATCTA 1768 Query 1654 TATGGAACTCCTAGCTATTGGGTCCAACACTTCTTCACCGAGTCAAGCGGAGCAACTCTT 1713 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1769 TATGGAACTCCTAGCTATTGGGTCCAACAGTTCTTCACCGAGTCAAGCGGAGCAACTCTT 1828 Query 1714 CTCAATTCTACACTTAAGGGAAAGACTTCTTCTGTTGAAGCATCTGCCATCTCTTTCCAA 1773 ||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||| |||||| Sbjct 1829 CTCAATTCTACTCTTAAGGGAAACTCTTTTTCTATTGAAGCATCTGCTATCTCCTTCCAA 1888 Query 1774 ACCAATGGCAAAGA-TTACATACAGATCAAGGCTGTAAACTTTGGAGAACAATCAGTAAA 1832 ||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1889 GCCAATGGCAAA-ACTTACATACAAATCAAGGCTGTAAACTTTGGAGAAGAATCAGTAAA 1947 Query 1833 TCTAAAGGTAGCAGTGACAGGATTGATGGCAAAATTTTATGGATCCAAAAAGAAAGTACT 1892 |||||||||| | ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 1948 TCTAAAGGTAACGGTGACCGGATTGATCGCAAAATTTTATGGATCCAAGAAGAAAGTACT 2007 Query 1893 TACATCTGCCAGTGTGATGGATGAGAACTCTTTTTCAAACCCAAATATGATTGTGCCACA 1952 ||||||||||| ||||||||||||||| ||||| |||| |||| | ||||||||||| || Sbjct 2008 TACATCTGCCAATGTGATGGATGAGAATTCTTTCTCAACCCCAGAGATGATTGTGCCGCA 2067 Query 1953 AGAAAGTTTGCTGGAGATGACTGAGCAGGAAGACCTTATGTTTGTTCTCCCGCCGCACTC 2012 |||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 2068 AGAAAGCTTGCTAGAGATGACTGAGGAGGAGGACCTTATGTTTGTTCTCCCGCCGCACTC 2127 Query 2013 GTTCTCTTCCTTCGATTTGTTGACAGAATCTGAAAATGTCATCAAGATGCCAATATCTGA 2072 |||||| |||||||||||||||| | ||||||||||| |||||||||||||||||| || Sbjct 2128 GTTCTCCTCCTTCGATTTGTTGAAACAATCTGAAAATATCATCAAGATGCCAATAT--GA 2185 Query 2073 TTCATACAAGAAAACTTCAACAATGTGAAGAGAAACATCATCTTGGAGACTT 2124 ||| ||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 2186 TTCCTACAACAAAACTTCAACAATGTGAAGAGAAACATCATGTTGGAGACTT 2237 Score = 1109 bits (600), Expect = 0.0 Identities = 751/821 (91%), Gaps = 21/821 (3%) Strand=Plus/Plus Query 1 ACTTTTAATCCTAGTTTCACTGCTCATTCGTGTCTTTCTTCTATCAAGG-----T--CTT 53 |||||||||||| |||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 ACTTTTAATCCTCGTTTCACTGCTCATTCGTGTCTTTCTTCTATCAAGGTTAATTACCTT 60 Query 54 TCTCTGGTTAAATTTGGTGATTATGGACATGGAAACATCTTGGAGATTTCTCAGAAGTGT 113 |||||| ||| || |||||| ||||||||||| || |||||||||||||||| |||||| Sbjct 61 TCTCTGATTAGATCTGGTGACGATGGACATGGAGACTTCTTGGAGATTTCTCAAAAGTGT 120 Query 114 TTGCTTACTTTCATTTATCCTTGG-GTCTTTTTCTGTCTACCAAACCCTTTGTCTTGTTG 172 |||| ||||||| ||| || |||| | ||| |||||||||||||| |||||||||||| | Sbjct 121 TTGCATACTTTCCTTTCTCATTGGCG-CTTGTTCTGTCTACCAAAGCCTTTGTCTTGTCG 179 Query 173 ACGCTCAAGAAGACGCCATTGTAACACTGCAAGTAGATGCTTCTAACGTGACACGGCGAC 232 | ||||||| |||||||||||||||| |||||||||||||||||||| ||||| | |||| Sbjct 180 ATGCTCAAGCAGACGCCATTGTAACATTGCAAGTAGATGCTTCTAACATGACAAGACGAC 239 Query 233 CGATTCCCGAAACTCTATTTGGGATCTTCTTTGAGGAAATAAATCATGCTGGAGCAGGTG 292 | ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 240 CAATTCCTGAAACTCTATTCGGAATCTTCTTTGAGGAAATAAATCATGCTGGAGCAGGTG 299 Query 293 GACTATGGGCTGAACTTGTTAGCAATAGAGGATTTGAAGCTGGTGGACAAATCATTCCTT 352 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 300 GACTATGGGCTGAACTTGTTAGCAACAGAGGATTTGAAGCTGGTGGACAAACCATTCCTT 359 Query 353 CCAATATCTGGCCTTGGTCCATTATTGGAGATGAATCATCCATTTATGTTGTTACAGACC 412 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 360 CCAATATCTGGCCTTGGTCCATTATTGGAGATGAATCATCCATATATGTCGTTACAGACC 419 Query 413 GTTCTTCGTGTTTTGAGCGTAACAAGATTGCTCTTAGAATGGAAGTCCTTTGTGACAGCA 472 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 420 GTTCTTCGTGTTTTGAGCGTAACAAGATTGCTCTTAAAATGGAAGTGCTTTGTGACAGCA 479 Query 473 A---C--T--C--TTGT---CCGTTAGGAGGAGTCGGGGTTTATAACCCGGGTTACTGGG 520 | | | | |||| || | ||||||||| ||| |||||||||||||||| |||| Sbjct 480 ATGGCAGTAGCAATTGTTGTCCATCAGGAGGAGTTGGGATTTATAACCCGGGTTATTGGG 539 Query 521 GCATGAACATTGAAGAAGGGAAGAAATATAAAGTGGTGTTATATGTGCGTTCGACTGGGG 580 |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| || | Sbjct 540 GCATGAACATTGAAGAAGCGAAGAAATACAAAGTGGTGTTCTATGTGCGTTCGACCGGAG 599 Query 581 ACATCGATGTGTCTGTGTCGTTTACAAGTTCTAATGGATCAGTGACTCTTGCGTCAGAAA 640 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 600 ACATCGATGTGTCTGTGTCGTTTACAAGTTCGAATGGATCATTGACTCTTGCGTCAGAAA 659 Query 641 ATATTATAGCTTTGGCTTCTGATCTTTTAAATTGGACAAAAAAGGAAATGCTTTTAGAAG 700 ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| Sbjct 660 ATATTATAGCTTTGGCTTCTGATGTTTCAAATTGGACTAAAAAGGAAATGCTTTTAGAAG 719 Query 701 CAAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACTACCAAAAAAGGTTCAATTT 760 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 720 CAAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACAACCAAAAAAGGTTCAATTT 779 Query 761 GGTTTGATCAAGTCTCAGCCATGCCTATGGATACTTACAAG 801 ||||||| ||||||||||||||||||||||||||||||||| Sbjct 780 GGTTTGACCAAGTCTCAGCCATGCCTATGGATACTTACAAG 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83112914590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5