BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26200.1 Length=1263 Score E Sequences producing significant alignments: (Bits) Value Ahg942207 jgi|Araly1|942207|scaffold_602751.1 1620 0.0 > Ahg942207 jgi|Araly1|942207|scaffold_602751.1 Length=1078 Score = 1620 bits (877), Expect = 0.0 Identities = 1001/1060 (94%), Gaps = 11/1060 (1%) Strand=Plus/Plus Query 117 TTAGCTC-AAA-ATGAGTTTAGGTGCTTTGATGGAAGAGAAGAGAAGAGCAACAACTTCA 174 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10 TTAGCTCAAAATATGAGTTTAGGTGCTTTGATGGAAGAGAAGAGAAGAGCAACAACTTCA 69 Query 175 ------TCTTCTTCTTCTCAGGTACATATGTCAAATGATATAGATTGGCAAATGCTTGAT 228 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 70 TCTTCTTCTTCTTCTTCTCAGGTACATATGTCTAATGATATAGATTGGCAAATGCTTGAT 129 Query 229 AAATCGAGGTTTTTCTTCCTCGGTGCTGCTCTTTTCTCCGGTGTATCCACTGCTCTTTAC 288 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 130 AAATCGAGGTTTTTCTTTCTCGGTGCTGCTCTTTTCTCCGGTGTGTCCACTGCTCTTTAC 189 Query 289 CCTATTGTAGTTCTCAAAACAAGGCAACAAGTCTCTCCGACTCGTGTCTCATGTGCCAAC 348 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 190 CCTATTGTAGTTCTCAAAACAAGGCAACAAGTCTCTCCGACTCGTGTCTCTTGCGCCAAC 249 Query 349 ATTTCTCTGGCTATTGCTAGACTTGAAGGTCTTAA-AGGGTTTTACAAGGGTTTTGGAAC 407 |||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| Sbjct 250 ATTTCTCTGGCTATTGCTAGACTTGAGGGTC-TAAGAGGGTTTTACAAGGGGTTTGGAAC 308 Query 408 ATCTTTGCTTGGAACCATCCCGGCTCGTGCTCTCTATATGACTGCTCTAGAGATTACAAA 467 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 309 ATCTTTGCTTGGAACTATCCCGGCTCGTGCTCTCTATATGACAGCTCTAGAGATTACGAA 368 Query 468 GAGTAGTGTAGGTCAAGCAACTGTTAGGTTAGGATTGTCTGATACTACGTCTTTGGCTGT 527 ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 369 GAGTAGTGTAGGTCAAGCAACTGTTAGTTTAGGATTGTCGGATACTACGGCTTTGGCTGT 428 Query 528 TGCTAATGGTGCAGCTGGTTTGACCTCGGCTGTGGCTGCCCAGACTGTCTGGACTCCGAT 587 |||||||||||||||||||||||||||||| || ||||| ||| ||||||||| ||||| Sbjct 429 TGCTAATGGTGCAGCTGGTTTGACCTCGGCCGTTGCTGCTCAGGTTGTCTGGACCCCGAT 488 Query 588 TGATATTGTGAGTCAAGGGCTTATGGTTCAAGGCGATGTCTCCTTGAGTAAGCATCTTCC 647 |||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| |||| Sbjct 489 TGATGTTGTGAGTCAACGGCTTATGGTTCAAGGCGATCTTTCCTTGAGTAAGCATATTCC 548 Query 648 TGGAGTGATGAACTCTTGCAGATACAGAAATGGGTTTGATGCTTTTAGAAAGATTCTTTA 707 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 TGGAGTGATGAATTCTTGCAGATACAGAAATGGGTTTGATGCTTTTAGAAAGATTCTTTA 608 Query 708 CACAGATGGACCAAGAGGGTTCTACAGAGGATTTGGGATCTCGATCTTGACTTACGCACC 767 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 609 CACAGATGGACCAAGAGGGTTCTACAGAGGATTCGGGATCTCGATCTTGACTTACGCGCC 668 Query 768 TTCCAACGCGGTTTGGTGGGCGTCTTATTCTTTGGCTCAAAAATCAATTTGGTCTCGATA 827 ||| || || || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 669 TTCAAATGCCGTATGGTGGGCGTCCTATTCTTTGGCTCAAAAATCAATTTGGTCTCGATA 728 Query 828 CAAGCACTCCTACAACCACAAGGAAGATGCTGGTGGCTCAGTGGTGGTTCAAGCGTTGAG 887 || |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 729 CACGCACTCCTGCGACCACAATAAAGATGCTGGTGGCTCAGTGGTGGTTCAAGCGTTGAG 788 Query 888 TGCAGCTACAGCAAGCGGTTGCTCGGCTTTAGTAACTATGCCAGTAGACACAATCAAGAC 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 TGCAGCTACAGCAAGCGGTTGCTCGGCTTTAGTAACTATGCCAGTAGACACAATCAAGAC 848 Query 948 GCGGTTGCAAGTCTTAGACGCAGAAGAGAACGGGAGGAGACGAGCAATGACAGTGATGCA 1007 |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 849 ACGGTTGCAGGTCTTAGACACAGAAGAGAACGGGAGGAGACGAGCAATGACAGTGATGCA 908 Query 1008 GTCAGTGAAGAGCTTGATGAAGGAAGGAGGAGTTGGTGCTTGTTACAGAGGATTAGGACC 1067 ||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||| Sbjct 909 GTCGGTGACGAGCTTGATGAAGGAAGGAGGATTTGGGGCTTGTTACAGAGGATTGGGACC 968 Query 1068 AAGATGGGTCTCAATGTCGATGTCCGCAACAACGATGATCACAACCTACGAGTTCTTGAA 1127 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 969 AAGGTGGGTCTCAATGTCGATGTCCGCAACAACAATGATCACAACCTACGAGTTCTTGAA 1028 Query 1128 GCGCCTAGCAACAAAGAAGCAGAAATGATATATTGATAAA 1167 |||||| |||||||||||||||||||||||||| |||||| Sbjct 1029 GCGCCTGGCAACAAAGAAGCAGAAATGATATAT-GATAAA 1067 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47196171246 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5