BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26340.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489474 jgi|Araly1|489474|fgenesh2_kg.6__2608__AT5G26340.1 2776 0.0
> Ahg489474 jgi|Araly1|489474|fgenesh2_kg.6__2608__AT5G26340.1
Length=1868
Score = 2776 bits (1503), Expect = 0.0
Identities = 1755/1873 (94%), Gaps = 32/1873 (2%)
Strand=Plus/Plus
Query 13 TCTGTTTAACTCCTTGAGAGAAAATAACTTTTAAACTTTAGCTTCT-AAGAGATATTCAG 71
||| ||||||||||||||||||||||||||||| |||||||||||| |||| || |||||
Sbjct 1 TCTCTTTAACTCCTTGAGAGAAAATAACTTTTATACTTTAGCTTCTGAAGATATTTTCAG 60
Query 72 GATGACCGGAGGAGGATTTGCGACTTCGGCGAACGGAGTAGAGTTTGAGGCAAAGATAAC 131
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 61 GATGACCGGAGGAGGATTTGCAACTTCGGCGAACGGAGTGGAGTTTGAGGCAAAAATAAC 120
Query 132 TCCAATAGTCATCATATCTTGCATCATGGCTGCTACCGGCGGCCTCATGTTTGGTTACGA 191
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTATAGTCATCATATCTTGCATCATGGCTGCTACCGGCGGCCTCATGTTTGGTTACGA 180
Query 192 CGTCGGTGTCTCCGGCGGAGTGACATCGATGCCGGACTTTCTCGAAAAGTTTTTTCCCGT 251
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CGTTGGTGTTTCCGGCGGAGTGACATCGATGCCGGACTTTCTCGAAAAGTTTTTTCCGGT 240
Query 252 GGTTTATCGGAAAGTAGTAGCTGGCGCCGACAAAGACAGCAACTACTGCAAATACGACAA 311
|||||| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 241 GGTTTACCGGAAAGTACAAGCCGGCACCGAAAAAGACAGCAACTACTGCAAATACGACAA 300
Query 312 CCAAGGACTACAACTTTTCACATCATCTTTATACTTAGCCGGTCTAACCGCAACGTTCTT 371
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 CCAAGGGCTACAACTTTTCACATCATCTCTATACTTAGCCGGTCTAACCGCAACGTTCTT 360
Query 372 TGCTTCATACACGACAAGAACGCTCGGAAGGAGGCTAACTATGCTCATAGCCGGCGTTTT 431
|||||||||||||| || |||| ||| |||||||||| ||||| ||||||||||| ||
Sbjct 361 CGCTTCATACACGACGAGGACGCGAGGACGGAGGCTAACGATGCTTATAGCCGGCGTGTT 420
Query 432 CTTCATCATAGGTGTGGCTCTCAACGCGGGGGCTCAAGACCTAGCCATGCTTATTGCAGG 491
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCATCATCGGTGTGGCTCTCAACGCGGGGGCTCAAGACCTAGCCATGCTTATTGCAGG 480
Query 492 -CAGGATATTGCTTGGTTGTGGAGTTGGGTTCGCTAATCAAGCCGTTCCGTTGTTCTTGT 550
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TC-GGATATTGCTTGGTTGTGGAGTTGGGTTCGCTAATCAAGCCGTTCCGTTGTTCTTGT 539
Query 551 CGGAGATTGCACCTACTAGGATCCGTGGTGGTCTTAATATTCTCTTTCAGCTTAACGTCA 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 CGGAGATTGCACCTACTAGGATCCGTGGTGGTCTTAATATTCTCTTTCAGCTTAACATCA 599
Query 611 CTATTGGTATCCTCTTCGCCAATCTTGTCAACTATGGGACCGCCAAGATTAAAGGAGGTT 670
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 600 CTATTGGTATCCTCTTCGCCAATCTTGTCAACTATGGGACCGCCAAG-----AGGA---T 651
Query 671 GGGGATGGAGGTTATCGTTAGGTTTGGCGGGAATTCCCGCGCTTCTTCTAACGGTCGGAG 730
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 652 GGGGATGGAGGTTATCGTTAGGTTTGGCGGGAA-TCCCGCACTTCTTCTAACGGTCGGAG 710
Query 731 CTTTATTGGTGACAGAGACACCAAACAGTTTAGTCGAAAGAGGTCGTCTCGATGAAGGTA 790
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTTTATTGGTGACGGAGACACCAAACAGTTTAGTCGAAAGAGGTCGTCTCGATGAAGGTA 770
Query 791 AAGCTGTTCTTCGTCGTATTCGAGGGACCGATAATGTTGAACCAGAGTTCGCTGATCTCC 850
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 771 AAGCTGTTCTTCGTCGTATTCGAGGTACCGATAATGTTGAACCAGAGTTCGCTGATCTAC 830
Query 851 TTGAAGCTAGTCGACTTGCTAAAGAAGTTAAACACCCTTTTAGAAACCTTCTTCAACGTA 910
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCGAAGCTAGTCGACTTGCTAAAGAAGTTAAACACCCTTTTAGAAACCTTCTTCAACGTA 890
Query 911 -GAAACCGTCCTCAGCTCGTCATCGCCGTCGCTTTACAGATTTTCCAGCAATGTACTGGA 969
||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 891 AGAATC-GTCCTCAGCTCGTCATCGCTGTCGCTTTACAGATTTTCCAACAATGTACTGGA 949
Query 970 ATCAACGCGATTATGTTCTACGCGCCTGTTCTGTTCAGCACATTAGGGTTTGGTAGTGAC 1029
||||||||||||||||||||||| ||||||||||||| |||| |||||||||| | ||||
Sbjct 950 ATCAACGCGATTATGTTCTACGCTCCTGTTCTGTTCAACACAGTAGGGTTTGGCAATGAC 1009
Query 1030 GCTTCACTTTACTCAGCAGTGGTGACCGGAGCAGTCAACGTCCTCTCAACTTTAGTCTCA 1089
||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1010 GCTTCTCTTTACTCTGCAGTGGTCACCGGAGCAGTCAACGTCCTCTCAACTGTAGTCTCA 1069
Query 1090 ATCTACTCCGTTGACAAAGTCGGTCGCCGAGTTCTTCTCCTAGAAGCTGGTGTCCAAATG 1149
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1070 ATCTACTCCGTTGACAAAGTCGGTCGCCGTTTTCTTCTCCTTGAAGCTGGTGTCCAAATG 1129
Query 1150 TTCTTCTCTCAAGTCGTAATCGCCATTATCCTTGGCGTCAAAGTAACAGAC-ACTTCTAC 1208
|||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||
Sbjct 1130 TTCTTCTCTCAAGTCGTAATTGCCATTATCCTTGGCATCAAAGTAACAGACCACT-CTAC 1188
Query 1209 AAATCTCTCCAAAGGTTTCGCAATTCTAGTCGTGGTAATGATCTGCACATACGTCGCTGC 1268
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1189 AAATCTCTCCAAAAGTTTCGCAATTCTAGTTGTGGTAATGATCTGCACATACGTCGCTGC 1248
Query 1269 TTTCGCCTGGTCTTGGGGACCGCTCGGGTGGTTAATCCCTAGTGAGACATTCCCTCTAGA 1328
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1249 TTTCGCTTGGTCTTGGGGACCGCTCGGGTGGTTAATCCCGAGTGAGACATTCCCTCTAGA 1308
Query 1329 GACACGTTCCGCGGGACAAAGTGTAACGGTCTGCGTTAACTTGCTCTTCACGTTCATTAT 1388
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1309 GACACGTTCCGCTGGACAAAGTGTGACGGTTTGCGTTAACTTGCTCTTCACGTTCATTAT 1368
Query 1389 CGCTCAAGCTTTCCTCTCTATGCTTTGCCATTTCAAGTTTGGGATATTCATCTTCTTTTC 1448
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1369 CGCTCAAGCTTTCCTCTCGATGCTTTGCCATTTCAAGTTTGGAATATTCATCTTCTTTTC 1428
Query 1449 TGCATGGGTTTTGATTATGTCTGTCTTTGTGATGTTCCTACTTCCGGAGACTAAGAATAT 1508
|| ||||||||| |||||||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 1429 GGCTTGGGTTTTGGTTATGTCTTTCTTTGTGATGTTCCTCCTTCCTGAGACTAAGAATGT 1488
Query 1509 TCCTATCGAGGAGATGACTGAGAGAGTTTGGAAGAAGCATTGGTTCTGGGCTAGGTTCAT 1568
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1489 GCCGATAGAGGAGATGACTGAGAGAGTGTGGAAGAAGCATTGGTTCTGGGCTAGGTTCAT 1548
Query 1569 GGATGATCATAATGATCACGAGTTCGTGAATGGTGAGAAGAGTAATGGTAAATCTAATGG 1628
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1549 GGATGATCATAATGATCAAGTGTTCGTGAATGGTAAGAAGAGTAATGGTAAATCTAATGG 1608
Query 1629 CTTTGATCCTTCAACACGGCTTTAAAGTGGTTTAAGAGTCCCTAACCAAAGTAGAAGCAG 1688
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1609 CTTTGATCCTTCAACACGGCTTTAAAGTGGTTTAAGAGTCA-TAACTTAAGTAGAAGCAG 1667
Query 1689 AAGAGAGTGAA-CAAGAGGTGGTAAACACACCAAAGTAGAGAAG-GGAAATACAGTTTTC 1746
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1668 AAGAGAGTGAAACAAGAGGTGGTAAACACACCAAAATAGAGAAAAGGAAATACAGTTTTT 1727
Query 1747 AA-TTCTATACAGTGTACTAAATTTCGTTACTTTAAGTTTGAACTGCGTTTGTGAATAAG 1805
|| || |||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1728 AAATTTTATACAGTGTACTAAATTTCGTTACTTTAA-----A-CTGTGTTTGTGAATAAG 1781
Query 1806 TGAAGtttttttttttGCTTTGTTGTGGTTCTTAATGTCATCCCTGAGTTCCAATTT-TC 1864
|||||| ||||||| ||||||||||||||||||||| ||||| |||||||| ||| ||
Sbjct 1782 TGAAGTCTTTTTTT---CTTTGTTGTGGTTCTTAATGTAATCCCCGAGTTCCA-TTTCTC 1837
Query 1865 TACAAGTGTGACA 1877
||||||||||||
Sbjct 1838 -ACAAGTGTGACA 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5