BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26731.1

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489488 jgi|Araly1|489488|fgenesh2_kg.6__2622__AT5G26731.1         571    2e-162


> Ahg489488 jgi|Araly1|489488|fgenesh2_kg.6__2622__AT5G26731.1
Length=587

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 424/476 (89%), Gaps = 21/476 (4%)
 Strand=Plus/Plus

Query  22   GAGCGAGACAAAGAGTTTAACACACGCTTCTAACCAAACTCTTCGTAACTACGGC---GG  78
            ||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||   ||
Sbjct  2    GAGAGAGAGAAAGAGTTTAACACACGCTTCTAACCAAACTCTTCTTGACTACGGCGGTGG  61

Query  79   CGAC--TG--AAGCGTTTTCAGATTCCGATGAGTGAGAAGCTTGTGTTCAGAAGCACTAG  134
            ||||   |  |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct  62   CGACGGCGCTAAGCGTTTTCAGGTTCCGATGAGTGAGAAGCTTGTGTTCAGAAGCAGTAG  121

Query  135  TGGTGGTGACTACTACGG------T---GCACCATATGGAGAGTATATGGAGAAGAGACA  185
            ||||||||||||||||||      |   |||||||| |||||||||||||||||||||||
Sbjct  122  TGGTGGTGACTACTACGGTACTCATGGAGCACCATACGGAGAGTATATGGAGAAGAGACA  181

Query  186  GTTGTTTCTCAGAAGCTACCAGTTTTCAAGAAAACAGAGTTTCGCTGAGAAAGTTTCAAG  245
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  182  GTTGTTTCTCAGAAGCTACCAGTTTTCAAGAAAACAGAGTTTCACTGAGAAAGTTTCAAG  241

Query  246  ATCTGTTACGAGAGTGAAACGAGTTGTGTTGACAAGATTAAGATCAGCTCCGAAATTGAA  305
            |||||||| ||||||||||||||||||||| || ||||| |||||||||| ||  |||||
Sbjct  242  ATCTGTTAAGAGAGTGAAACGAGTTGTGTTAACGAGATTTAGATCAGCTCGGAGGTTGAA  301

Query  306  ACGCGTCGTTTGGTCACGACTCAGATCGGC-TTTTTACTACCGTCGGAGACGtttttttC  364
            ||||||||||||||| || || ||| |||| ||||| |||||| ||||||||||||| | 
Sbjct  302  ACGCGTCGTTTGGTCTCGCCTTAGAACGGCGTTTTT-CTACCGCCGGAGACGTTTTTGTA  360

Query  365  GACTTCTTCACTTACACGAACCTTGTTATTGTTTCTAAAAGGTTTTGGATT--AGTGTTT  422
            ||||||||||||||||||||||||||||||||||||||| ||||| | |||  | |||||
Sbjct  361  GACTTCTTCACTTACACGAACCTTGTTATTGTTTCTAAATGGTTTAGAATTTTATTGTTT  420

Query  423  GTTTCGTCTTTAATTGTGTTTATGCTCAAATTAATCACTGTATAATCTCGTTGTTT  478
            |||||||||||||||||||| || ||   |||||||||||||||||||||||||||
Sbjct  421  GTTTCGTCTTTAATTGTGTT-ATTCTTGGATTAATCACTGTATAATCTCGTTGTTT  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29812121094


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5