BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26742.2
Length=2933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326886 jgi|Araly1|326886|fgenesh1_pm.C_scaffold_6002106 3735 0.0
> Ahg326886 jgi|Araly1|326886|fgenesh1_pm.C_scaffold_6002106
Length=2247
Score = 3735 bits (2022), Expect = 0.0
Identities = 2176/2251 (97%), Gaps = 8/2251 (0%)
Strand=Plus/Plus
Query 133 ATGGCGTCGACGGTAGGAGTTCCATCACTATACCAAGTTCCTCACCTTGAAATCTCCAAA 192
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGACGGTAGGAGTTCCATCACTTTACCAAGTTCCTCACCTTGAAATCTCCAAA 60
Query 193 CCCAATTCCAAAAAGAGGTCTAATTGTTTATCTTTATCTCTCGATAAGCCTTTCTTCACT 252
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 CCCAATTCCAAAAAGAGGTCTAATTGCTTCTCTTTATCTCTCGATAAGCCTTTCTTCACT 120
Query 253 -C-CCT-TATCTCTTGTTCGTAGAACTCGTCGTATCCATTCCTCTTCTCTTCTTGTTCCT 309
| ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCTCCTATCTCTCTTGCTCGTAGAACTCGTCTTATCCATTCCTCTTCTCTTCTTGTTCCT 180
Query 310 TCTGCTGTTGCTACTCCTAATTCTGTTCTCAGTGAAGAAGCTTTCAAAAGTCTTGGTCTT 369
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCTGCTGTTGCTACCCCTAATTCTGTTCTTAGTGAAGAAGCTTTCAAAAGTCTTGGTCTT 240
Query 370 TCTGACCATGACGAATATGACCTTGACGGCGACAACAACAACGTTGAAGCTGATGATGGT 429
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 241 TCTGACCATGACGAGTATGACCTTGACGGTG---ACAACAACGTTGAAGCTGATGATGGT 297
Query 430 GAAGAACTCGCTATCTCTAAACTTAGTTTGCCTCAACGTCTTGAAGAGTCTCTTGAGAAA 489
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 GAAGAGCTTGCTATCTCTAAACTTAGTTTGCCTCAGCGTCTTGAAGAGTCTCTTGAGAAG 357
Query 490 CGTGGTATCACTCATCTCTTCCCCATTCAGAGAGCTGTGTTGGTACCTGCACTGCAAGGA 549
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGTGGTATTACTCATCTCTTCCCCATTCAGAGAGCTGTGTTGGTACCTGCACTGCAAGGA 417
Query 550 AGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTGGCTTTTGGTATTCCT 609
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 418 AGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTAGCTTTTGGTATCCCT 477
Query 610 ATCATTAAACGTCTCACTGAAGAAGCTGGAGACTACACTGCTTTCAGGAGGTCTGGTCGT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATCATTAAACGTCTCACTGAAGAAGCTGGAGACTACACTGCTTTCAGGAGGTCTGGTCGT 537
Query 670 CTTCCTAAGTTCCTTGTCCTTGCGCCGACCCGAGAGCTGGCTAAGCAAGTGGAGAAGGAG 729
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 CTTCCTAAGTTCCTTGTTCTTGCGCCGACTCGAGAGCTGGCTAAGCAAGTGGAGAAGGAG 597
Query 730 ATTAAGGAGTCTGCACCTTATTTGAGCACTGTTTGTGTGTATGG-GGGAGTTTCTTATAC 788
|||||||||||||||||||||||||| || |||||||||||||| ||| |||||||| ||
Sbjct 598 ATTAAGGAGTCTGCACCTTATTTGAGTACCGTTTGTGTGTATGGTGGG-GTTTCTTACAC 656
Query 789 CATTCAGCAGAGTGCTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGAAGAAT 848
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 657 CATTCAGCAGAGTGCTTTGACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGGAGGAT 716
Query 849 CATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTTGAGTATTTGGTACTTGA 908
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 717 CATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTCGAGTATTTGGTACTTGA 776
Query 909 TGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGCCGTGGAATCGATTCTTGAGAA 968
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 TGAAGCTGATCAGATGCTTGCTGTTGGTTTTGAGGAGGCCGTGGAATCGATTCTTGAGAA 836
Query 969 TCTTCCAACTAAGCGACAAAGTATGCTTTTCTCAGCAACTATGCCTACTTGGGTTAAGAA 1028
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 TCTCCCAACTAAGCGACAAAGTATGCTTTTCTCAGCTACTATGCCTACTTGGGTTAAGAA 896
Query 1029 GTTGGCGAGGAAGTACCTTGACAATCCCTTGAATATTGATCTGGTTGGAGACCAAGATGA 1088
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 GTTGGCGAGGAAGTACCTTGACAATCCCTTGAACATTGATCTGGTTGGAGACCAAGATGA 956
Query 1089 GAAGCTCGCAGAGGGTATCAAACTTTATGCAATCGCAACCACATCGACATCAAAACGCAC 1148
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 GAAGCTAGCAGAGGGGATCAAACTTTATGCAATCGCAACCACATCAACATCAAAACGCAC 1016
Query 1149 TATTCTAAGCGACCTTATTACAGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACCCA 1208
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 TATTCTAAGCGACCTTATAACAGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACTCA 1076
Query 1209 AACTAAAAGAGATGCAGACGAAGTTTCTCTTGCATTGTCAAACAGTATAGCTACCGAAGC 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AACTAAAAGAGATGCAGACGAAGTTTCTCTTGCATTGTCAAACAGTATAGCTACCGAAGC 1136
Query 1269 ACTTCATGGAGATATATCTCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGTCAAGG 1328
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 ACTTCATGGAGATATATCCCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGCCAAGG 1196
Query 1329 GAAATTCACCGTATTAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCGAACGT 1388
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1197 GAAATTCACTGTATTAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCAAACGT 1256
Query 1389 AGATCTAGTTATCCACTATGAACTTCCTAATGACCCAGAAACTTTTGTGCACCGTTCTGG 1448
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 AGATCTAGTTATCCACTATGAACTTCCTAATGACCCAGAGACTTTTGTGCACCGTTCTGG 1316
Query 1449 TCGTACTGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAA 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TCGTACTGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAA 1376
Query 1509 GAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTAGCCCACC 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTAGCCCACC 1436
Query 1569 AACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGGTGT 1628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 AACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGCTGT 1496
Query 1629 TCACCCTGACTCCATAAAGTTTTTCTCAGCAACTGCTCAAAAACTATATGAGGAGAAAGG 1688
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1497 CCACCCTGACTCGATAAAGTTTTTCTCAGCAACTGCTCAAAAACTATATGAGGAAAAAGG 1556
Query 1689 AACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGTGGTTTCTCTCAGCCGCCTTCATC 1748
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 AACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGCGGTTTCTCTCAGCCGCCTTCATC 1616
Query 1749 AAGATCTCTCCTCAGCCATGAGAAGGGATGGGTGACTTTGCAATTGATCCGAGATCCAAC 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AAGATCTCTCCTCAGCCATGAGAAGGGATGGGTGACTTTGCAATTGATCCGAGATCCAAC 1676
Query 1809 GAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATCTTTACCG 1868
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1677 AAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATGTTTACCG 1736
Query 1869 TACAGCTGCAGATGAAGTTGGAAAAATCTTCTTGATCGCCGATGACAGGATCCAAGGAGC 1928
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1737 TACAGCTGCAGATGAAGTTGGAAAAATCTTCTTGATCGCAGATGACAGGGTCCAAGGAGC 1796
Query 1929 TGTATTTGATCTACCAGAGGAGATCGCGAAAGAGCTCCTAGAGAAAGATGTCCCCGAAGG 1988
||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 1797 TGTTTTTGATCTACCAGAGGAAATCGCGAAAGAGCTCCTAGAGAAAGAAGTGCCAGAAGG 1856
Query 1989 CAACAGTTTATCCATGATAACAAAGTTACCTCCACTTCAAGATGACGGACCATCTAGTGA 2048
|||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct 1857 AAACAGTTTATCCATGATAACCAAGTTACCTCCACTGCAAGATGATGGACCGTCTAGTGA 1916
Query 2049 TAACTACGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGG 2108
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TAACTATGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGG 1976
Query 2109 GTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGA 2168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 GTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGA 2036
Query 2169 CAGAGGTAGTAGAAGGAGCAGTGGTGGAGGAAGCAGCTGGTCCCGAGGTGGTAGTAGTTC 2228
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2037 CAGAGGAAGTAGAAGGAGCAGTGGCGGAGGAAGCAGCTGGTCCCGTGGTGGTAGTAGTTC 2096
Query 2229 CAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCC 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 CAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCC 2156
Query 2289 TTCGCGGGAGAGAAGTTTTGGAGGTTCATGCTTCATTTGTGGGAAATCTGGACACAGGGC 2348
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2157 TTCGCGAGAGAGAAGTTTTGGAGGTTCTTGCTTCATTTGTGGGAAATCAGGACACAGGGC 2216
Query 2349 AACAGATTGTCCTGATAAGAGAGGATTTTAG 2379
||||||||||||||| |||||||||||||||
Sbjct 2217 AACAGATTGTCCTGACAAGAGAGGATTTTAG 2247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110728342215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5