BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26820.1 Length=2136 Score E Sequences producing significant alignments: (Bits) Value Ahg489514 jgi|Araly1|489514|fgenesh2_kg.6__2648__AT5G26820.1 3001 0.0 > Ahg489514 jgi|Araly1|489514|fgenesh2_kg.6__2648__AT5G26820.1 Length=2034 Score = 3001 bits (1625), Expect = 0.0 Identities = 1793/1876 (96%), Gaps = 3/1876 (0%) Strand=Plus/Plus Query 220 GAGGAGAATCAATTTAT-AGAATGGTTGTTTCAATGGCTTTGGTCAGACATTCTCCGTCT 278 ||| ||||||||||| | |||||||||||||| |||||||||||||||||||| |||||| Sbjct 158 GAGAAGAATCAATTT-TCAGAATGGTTGTTTCCATGGCTTTGGTCAGACATTCCCCGTCT 216 Query 279 TTCGATTTTCTGTTTCATTTTCCGGTCGACAGAAGCCGTTTTCTATCGCCGGTTGCTTTT 338 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 217 TTCGATTTTCTGTTTCATTTTCCGGTCGACAGAAGTCGTTTTCTATCGCCGGTGGCTTTT 276 Query 339 TCTAGCGTTCGCTATCATCGCTTCCATTCTTGTAGATGGTTAAGTCTCCGCTCTTCACCT 398 ||||| |||||||||||||| |||| |||||||||||||||||||||| |||| |||||| Sbjct 277 TCTAGAGTTCGCTATCATCGGTTCCCTTCTTGTAGATGGTTAAGTCTCAGCTCATCACCT 336 Query 399 TCATGTTCTCGCAGGTTAAACAGTTTTAGTTCGAGGTGTTCGATTACAAACACTGATGTA 458 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 337 TCATGTTCTCGCAGGTTAAACAGTTTTAGTTCGAGGTGTTCGATTATAAACACTGATGTA 396 Query 459 TGTCACGAATTTGTGACTACTGATGATGAAATCCACGAGGATTTGCTTACTCCAATTGAG 518 |||||||| ||||| ||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 397 TGTCACGATTTTGTCACTACTGATGATGGCATTCACGAGGATTTGCTTGCTCCAATTGAG 456 Query 519 GATCATTCAATTCCTATTGTTCATCTTGATACCAATATCTCCGTTACTGAATCTCTGACC 578 |||||| ||||||| ||||||||| | |||||||||||| ||||||||||||| |||| | Sbjct 457 GATCATACAATTCCCATTGTTCATATCGATACCAATATCGCCGTTACTGAATCGCTGAGC 516 Query 579 TTACTCACCGAGTGTACTTACGTAGATACTGTTTTAACAGCATTGCCTGTATTGTCTGAG 638 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 517 TTACTCACCGAGTGTACTTACGTAGATACCGTTTTAACCGCATTGCCTGTATTGTCTGAG 576 Query 639 GAAGAGCAGACTGTAATTGCAGCCACTCCTGCTCACCCTGAAGGATTATATGTCTTATAT 698 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 577 GAGGAGCAGACTGTAATTGCAGCCACTCCTGCTCACCCTGAAGGGTTATATGTCTTATAT 636 Query 699 GCAAGTTGTTTGGTTGGAAATTTGGTTGAGCAACTTTGGAATTTTGCTTGGCCGTCCGCC 758 ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| Sbjct 637 GCAAGTTGTTTGGTTGGGAATTTGGTTGAACAACTTTGGAATTTCGCTTGGCCTTCCGCC 696 Query 759 ATTGCAATGCTATATCCGAGCTTACTACCTGTGGCAGTCATGGGGTTTGTCACTAAATTG 818 ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 697 ATTGCGATGCGACATCCGAGCTTACTACCTGTGGCAGTCATGGGGTTTGTTACTAAATTG 756 Query 819 GCGATAATTGCTGGAGGCCCTGTGGTTGGAAAGTTTATGGATTATAGTCCGAGAGTTCCT 878 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 757 GCGATAATTGCTGGGGGTCCAGTGGTTGGAAAGTTTATGGATTATAGTCCGAGAGTTCCT 816 Query 879 ACATATATCTCGTTGAATGTCATTCAGGCAGCCGCTCAAGTGCTATCTGCAGGAATGATA 938 || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 817 ACGTATATCTCGTTGAATGTCATTCAGGCAGCCGCTCAAGTGGTATCTGCAGGAATGATT 876 Query 939 ATTCATGCATACACGGTTCCTTCCACATCGGCGTCATCAATTCTTCTGCAGCCTTGGTTT 998 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 877 ATTCATGCATACACGGTTCCTTCCACATCGGCGTCATCAATTCTTCTTCAGCCTTGGTTT 936 Query 999 TTTGCATTGTTATTCGCAGGGGCCATTGACAGTCTATGTGGAATAGCATCTGGAGTCGCC 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 937 TTTGCATTGTTATTCGCAGGGGCCATTGACAGTCTATGTGGAATAGCATCTGGAGTCGCC 996 Query 1059 ATTGAACGTGATTGGGTTGTATTGTTGGCCGGCATAAACAGACCAATCGCTCTTGCTCAA 1118 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 997 ATTGAACGTGATTGGGTCGTATTGTTGGCGGGCATAAACAGACCAATCGCTCTTGCACAA 1056 Query 1119 GCAAATGCTGTTCTCCACAGAATAGATCTGCTTTGCGAGATAGCTGGGACGATGTTATTT 1178 |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| Sbjct 1057 GCAAATGCTGTTCTCCACCGAATAGATCTGCTTTGCGAGATCGCTGGGACCATGTTATTT 1116 Query 1179 GGCATTCTCCTATCCAAATATGACCCTGTGACCTGCTTAAAGTTTGCTGCCACACTAATG 1238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 GGCATTCTCCTATCCAAATATGACCCTGTGACCTGCTTAAAGTTTGCTGCCACACTAATG 1176 Query 1239 GTGGGTTCTTTGCCAACCATGACAGCTCTTATATGGCTGACCAACAAGTTCTCCTCTGGA 1298 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1177 GTGGGTTCTTTGCCAACCATGACAGCTCTTATATGGCTGACCAACAAGTTCTCTTCTGGA 1236 Query 1299 GTTCTGGACCGTCCTAAATGCTCCTTGAACAGCTGTTCTGCTGAAGGATCTCGTACTAAT 1358 |||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||| Sbjct 1237 GTTCTGGACCGTCCTAAATGCTCCCTGAGCAGCTGTTCTGCCGAAGGACCTCGTACTAAT 1296 Query 1359 ACCGACAGTATTTTTGATATTGGCATGGAAACTATCAAGCTCGGATGGAAAGAATATATT 1418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 ACCGACAGTATTTTTGATATTGGCATGGAAACTATCAAGCTCGGATGGAAAGAATATATT 1356 Query 1419 CAACAGCCAGTTCTTCCTGCTAGCCTCGCATATGTCCTTCTCTACTTTAACATCGTCCTC 1478 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1357 CAACAGCCAGTTCTTCCTGCTAGCCTTGCATATGTCCTTCTCTACTTTAACATCGTCCTC 1416 Query 1479 ACCCCAGGCAGCTTGATGACTGCATTTCTAACACAACGATGTGTGAATCCATCAGTTATT 1538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1417 ACCCCAGGCAGCTTGATGACTGCATTTCTAACACAACGATGTGTGAATCCATCAGTTATT 1476 Query 1539 GGTGGTTTCAGTGGATTATGCGCTGTTATGGGCGTCGCCGCAACCTTCTTATCAGCAAAC 1598 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1477 GGTGGTTTCAGTGGATTATGCGCTGTTATGGGCGTTGCCGCAACCTTCTTATCAGCAAAC 1536 Query 1599 TTGGTCAAACGAGTTGGCATTTTAAAGGCGGGTGCAGTAGGATTGTTTTTCCAAGCTTCA 1658 ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1537 TTGGTCAAACGCGTTGGCATTCTGAAGGCGGGTGCAGTAGGATTGTTTTTCCAAGCTTCA 1596 Query 1659 CTCCTTGCCGTTGCTGTTGCTGTGTATTGTAGCTCTTCTCTATCCCATAAAAGCCCACTC 1718 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1597 CTTCTTGCTGTTGCTGTTGCTGTGTATTGTAGCTCTTCTCTATCCCAGAAAAGCCCACTC 1656 Query 1719 TTCTTCTTCTTGTCCATGATCGTATTATCAAGGCTAGGTCACATGTCTTACGGCGTTGTG 1778 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1657 TTCTTCTTCTTGTCCATGATCGTATTATCGAGGTTAGGTCACATGTCTTACGGCGTTGTG 1716 Query 1779 GGAGCTCAAATACTTCAAACCGGCATTCCATCATCCAAGGCTAATCTCATCGGCGCAACG 1838 |||||||| || || |||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 1717 GGAGCTCAGATTCTCCAAACCGGAATTCCATCGTCCAAGGCTAATCTCATCGGTGCAACA 1776 Query 1839 GAGATCTCAGTGGCAAGTCTAGCTGAATCGCTTATGCTCGGAGTAGCCATAGCGGCGAAT 1898 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1777 GAGATCTCAGTGGCAAGTCTAGCTGAATCGCTGATGCTCGGAGTAGCCATAGCGGCAAAT 1836 Query 1899 GACGCTTCCCATTTCGGGTTTCTCGCGGTTCTGTCTCTTTTATCAGTTGTTGCGGCCTCA 1958 ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| Sbjct 1837 GACGCTTCCCATTTCGGGTTTCTTGCAGTTCTGTCTCTTTTATCAGTTGTTGCAGCCTCT 1896 Query 1959 TTGATATTCTGCAGATTGCTGAGAAATCCCACTGATGAACAAAGACGACTCTTCTCCTTC 2018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1897 TTGATATTCTGCAGATTGCTGAGAAATCCCACTGATGAACAAAGACGACTCTTCTCCTTC 1956 Query 2019 GACCCTCTCTCAAATTGATTTGGAGCTTTTACATTGAAATATTT-GTATAGTAGTTTCAC 2077 |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||| Sbjct 1957 GACCCTCTTTCAAATTGATTTGGAGCTTTTACATAGAAATATTTTGTATAGTAGTCTCAC 2016 Query 2078 TTTCAGTGTATAAATT 2093 |||||||||||||||| Sbjct 2017 TTTCAGTGTATAAATT 2032 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80370416950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5