BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26940.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942280 jgi|Araly1|942280|scaffold_602824.1 1515 0.0
> Ahg942280 jgi|Araly1|942280|scaffold_602824.1
Length=991
Score = 1515 bits (820), Expect = 0.0
Identities = 936/993 (94%), Gaps = 4/993 (0%)
Strand=Plus/Plus
Query 104 AGAGAGAGCGAGAGGATCTGATGTGTATCTCAATCTCGCAAGTCTCTAGATTGAGAATCC 163
||||| || |||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1 AGAGAAAGAGAGAGGATCTAATGTGTGTCTCAATCTCGCAAGTCTCTAGATTCAGAATCC 60
Query 164 ATTCATTTGGAAGTTCTTGCTGTGAGCGTGTTCATGGATGGATCAAGAACAGCTCTAGCT 223
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 61 ATTCATTTGGAAGTTCTTGCTGTGAACGTGTTCATGGTTGGATCAAGAACAGCTCAAGCT 120
Query 224 TGAAGCTGCTTGATGTTAGAGCTTCTTCTGTTGATGGTAAAGCAAGATGGATCAGACGTA 283
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
Sbjct 121 TGAAGCTGCTTGATGTTAGAGCTTCCTCGGTTGATGGCAAAGCAAGATGGATCAGACGGA 180
Query 284 ACGTGAGTACAACTACACAAGGTAGTAGAAGCAACACTAAGAGCAGTGTGTTGGGAGGAA 343
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ACGTGAGTACAACTACACAAGGTAGTAGAGGCAACACTAAGAGCAGTGTGTTGGGAGGAA 240
Query 344 CAGTTCCTGTAACCAGGATTATAGATGAAGAGAGTAGAACCAAGGTACAGCCTTTTGGTA 403
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGTTCCTCTAACTAGGATTATAGATGAAGAGAGTAGAACCAAGGTACAGCCTTTTGGTA 300
Query 404 ATCTTCAGCAACGGCTTGCGCAAGATAAAGATCTGTCTAAGCTCCTCACGGTTATAGTCT 463
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 301 ATCTTCAGCAACGGCTTGCGCAAGATAAAGATCTGCCTAAGCTCCTCACGGTTATTGTCT 360
Query 464 CTGATCTTGAGACAACTGGTTTGCATCGGAAAAATGAGCGGATAATTGAAATTGCAGCTC 523
||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 361 CTGATCTTGAGACAACTGGCTTGCATCGGAAGAGGGAGCGGATAATTGAAATTGCAGCTC 420
Query 524 AGGATATAGCTGGTGGTGGGTACAGCACATTTCAGACTCTTGTCAACCCGGGTGTTGTTC 583
||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 421 AGGATTTAGCTGGTGGTGGGTACAGCACATTTCAGACTCTCGTCAATCCGGGTGATGTTC 480
Query 584 CTATAACTAACGCACATATCCATGGAATCAGGAATGATATGGTCTGTCGACCCGAGGTTC 643
|| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 CTGTAACTAATACAGATATCCATGGAATCAGGACTGATATGGTCTGTCGACCCGAGGTTC 540
Query 644 CAAGGATGGAAGAGCTGATACCGATATTTCTGCGGTATGTTGAGAGTCGACAGAAGCCTG 703
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAAGGATGGAAGAGCTGATTCCGATATTTCTGCGGTATGTTGAGAGTCGACAGAAGCCTG 600
Query 704 GAGGTTATGTGATGTTAGTTGCACACAACGGCAAATCATTTGACTTCCAGTTTTTGATCA 763
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 GAGGTTATGTGATGTTAGTTGCACACAACGGCAAATCATTTGACTTCCGGTTTTTGATCA 660
Query 764 ACGAGTTTAACCGTTGTTCTTATGAGATTCCTCATAATTGGTTGTTACTCGACTCGCTCC 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACGAGTTTAACCGTTGTTCTTATGAGATTCCTCATAATTGGTTGTTACTCGACTCGCTCC 720
Query 824 CACTCGCTAGAGAGAACATGAAGTCTGTAGAGCCAACGGTTAAGCTAAGTTCATCGTTGG 883
|||||| ||||||| ||||||||||| |||| ||||||||||||| || |||||||
Sbjct 721 CACTCGGTAGAGAGCACATGAAGTCTTTAGACCCAACGGTTAAGCCAAAAGCATCGTTAA 780
Query 884 AAGCGCTTGCG-GA-CTACTATAGTCTTACAAGGGAGGGTGATGCTCACAGAGCCTTGTC 941
||| ||| | || | ||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 781 AAGTTCTT-CAAGAAC-ACTATAGTCTTACAAGGGAAGGTGACGCTCACAGAGCTTTGTC 838
Query 942 AGATGTGTTACTCTTATCTAAGGTGTTCCAGAAACTCACCATTGATCTCAAGCTCTCACT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATGTGTTACTCTTATCTAAGGTGTTCCAGAAACTCACCATTGATCTCAAGCTCTCACT 898
Query 1002 CTCTGATCTCGTCCTTCGCTGTCACACTGCATCTGATATCAGTGCTGCCATGGCCAAGAA 1061
||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 899 CTCTGATCTCGTCCTCCGCTGTCAAACTGCATCCGATATCAGTGCTGTCATGGCCAAGAA 958
Query 1062 CAAGAAGGCCTGAAGCATTTTAGACATAGCTAT 1094
|||||||||||||| ||||||||||||||||||
Sbjct 959 CAAGAAGGCCTGAAACATTTTAGACATAGCTAT 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5