BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27560.1 Length=1456 Score E Sequences producing significant alignments: (Bits) Value Ahg489571 jgi|Araly1|489571|fgenesh2_kg.6__2705__AT5G27560.1 1659 0.0 > Ahg489571 jgi|Araly1|489571|fgenesh2_kg.6__2705__AT5G27560.1 Length=1204 Score = 1659 bits (898), Expect = 0.0 Identities = 1103/1196 (92%), Gaps = 37/1196 (3%) Strand=Plus/Plus Query 136 GATTTGCCAAAGGCTTGCCTCATGGCTTATTCTTCAGTACCAAGCTGTTTCCATGGCTAT 195 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTTGCCAAAGGCTTGCATCATGGCTTATTCTTCAGTACCAAGCTGTTTCCATGGCTA- 59 Query 196 CTTCTCCATCGTTGTTCGTTCTCCACCACACAATTTTTCTCGGGTTCTCTCTCTTGTGGC 255 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| Sbjct 60 --TCTCCATCGTTGTTCGTTCTCCACCACCCAATTTTTCGCGGGTTCTCTCTCTTGCGGC 117 Query 256 TTCTCTGCTTCTACCAATTCAAGACTAAGAACATGTGTCAAATTCGAGAAGTTTCAGGGT 315 ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 118 TTCTCTGCTTCTAGCAATTCGAGACTAAGAACATGTGTCAAATTCGACAAGTTTCAGGGT 177 Query 316 GACTCTCCTCTTGAACAGAACACTTCAGTTTCTTCTTCCTCTTCTGTTTCACAGGAACTA 375 |||||||||||||||| || ||| ||||||||| ||| | | |||||||| || |||||| Sbjct 178 GACTCTCCTCTTGAACCGACCACATCAGTTTCTACTT-C-C-TCTGTTTCCCAAGAACTA 234 Query 376 CCATT---AGAAGAAGCTCAAGACCAACTAGAAGAAGAAGAAGATGA-TGATGACTGTTT 431 ||||| ||||||||||||||||||||||||||| || | || | | | || |||||| Sbjct 235 CCATTAGAAGAAGAAGCTCAAGACCAACTAGAAGACGATG-AGTTCAGTAATTTCTGTTT 293 Query 432 GCCTAATGATTTGGAAGGAGCTGTTAGGCAATCAGGTGAAGCAGGTGCTGCGTTTGTGAA 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 GCCTAATGATTTGGAAGGAGCTGTTAGGCAATCAGGTGAAGCAGGTGCTGCGTTTGTGAA 353 Query 492 CTCAGGAGGAA-ATAGAGCTATTGTGGAGCTTTTGATTCCTCAGCTGCAGTTTTTAGACG 550 ||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| | Sbjct 354 CTCAGGAGGAACA-AGAGCTATTGTGGAGCTCTTAATTCCCCAGCTGCAGTTTTTAGATG 412 Query 551 ATGAAGGTGCACAAGCTGAACTTTGGGACCTTTCGCGTGTTTTCTTGGAGACTCTCATTA 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 ATGAAGGTGCACAAGCTGAACTTTGGGACCTTTCGCGTGTTTTCTTGGAGACTCTCATTA 472 Query 611 AAGAAACAGGTTGTGAGAGAGTTAAAGCTGTATTTCCAGACGCTGGAGCTGCTGCATTGC 670 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 473 AAGAAACAGGTTGTGAGAGAGTTAAAGCCGTATTTCCAGATGCTGGAGCTGCTGCATTGC 532 Query 671 TAAAATACCGGTGGAAAGATGCAACGTTCGGATTTGCTAGCTTAAGTGACCGGAAACCTG 730 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 533 TAAAATACCGGTGGAAAGATGCAACGTTTGGATTTGCTAGCTTAAGTGACAGGAAACCAG 592 Query 731 TGGAGAAAGAAGATGAGATCATTGTCATGGTTGTTCCTGATTACCAAATGCTGGAATATG 790 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 593 TGGAGAAAGAAGATGAGATCATTGTCATGGTTGTTCCTGACTACCAAATGCTGGAATATG 652 Query 791 TTGAGAAAATTGCTAATGGGCTTGCTGATGACCCGCCAAGGCCTCTCATTATGTGGAACC 850 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 TTGAGAAAATTGCAAAAGGGCTTGCTGATGACCCGCCAAGGCCTCTCATTATGTGGAACC 712 Query 851 CTCGTCTTATAAGCGAGGAAGTCGGGGTTGGGTTTAACGTGAGAAAACTAAGGCGTTACT 910 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 713 CTCGTCTTATAAGCGAGGAAGTCGGGGTTGGGTTTAACGTGAGAAAACTAAGGCGGTACT 772 Query 911 TCCTAAGTTCATTCACTACGGTTTACTCTATGAGACCTCTGGCTGCTGGTGCTGTTTTCA 970 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 TCCTAAGTTCTTTCACTACGGTTTACTCTATGAGACCTCTGGCTGCTGGTGCTGTTTTCA 832 Query 971 GGTGTTATCCTGGTAAGTGGAAAGTCTTCTATGATAACAAAGACAGACCAGGCCGATACC 1030 ||||||| || ||||| |||||||||||||||||||| |||||||||||||| || |||| Sbjct 833 GGTGTTACCCCGGTAAATGGAAAGTCTTCTATGATAATAAAGACAGACCAGGGCGGTACC 892 Query 1031 TACTCGCTAAAGAACTCATTGGTCGACCTGATGCAGAGGATCTTGAGATAATATATGGGG 1090 ||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 893 TACTCGCCAAGGAACTCATTGGTCGGCCTGATGCTGAGGATCTTGAGATAATATATGGGG 952 Query 1091 GAGTAGAAGAGAAATCAGAAGAAGGGCCATCTTTAATGAGTCAAGCTGCTGGAATTTTCT 1150 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 953 GCGTAGAAGAGAAATCAGAAGAAGGGCCATCTTTATTGAGTCAAGCTGCTGGAATTTTCT 1012 Query 1151 CATCCATTAACAGGTTCATGAAATCAATGTGAAGATGATTTCTTCTCTGCAGTGTAATAC 1210 ||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1013 CATCCATTAACAGGTTCATGAAATCAATGTGAAGATGATATCTTCTCTGCA-TG------ 1065 Query 1211 TATTCACATGTCCTGGTATTAGAAATGTAACCAAAGGGTATTACTGTATATCTTTCTATG 1270 || ||||||| |||||||||||||||| ||||||||||||| |||| Sbjct 1066 ---------GT------ATTAGAATTGTAACCAAAGGGTAT-ACTGTATATCTTTGTATG 1109 Query 1271 CTATTACATCATGAAGAGTATAA-TACGTACTGGTAAAGAGTTCTGTTCCTTCTAT 1325 |||||||| ||||| ||||||| | ||||| ||||| ||||||||||||||||| Sbjct 1110 CTATTACACCATGATGAGTATATCTTTGTACTCGTAAAAAGTTCTGTTCCTTCTAT 1165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54469050350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5