BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27600.1
Length=2353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489570 jgi|Araly1|489570|fgenesh2_kg.6__2704__AT5G27600.1 3448 0.0
> Ahg489570 jgi|Araly1|489570|fgenesh2_kg.6__2704__AT5G27600.1
Length=2279
Score = 3448 bits (1867), Expect = 0.0
Identities = 2173/2315 (94%), Gaps = 44/2315 (2%)
Strand=Plus/Plus
Query 27 AGAAAGAAGAAAAGATGGAATTTGCTTCGCCGGAACAACGTCGTCTCGAAACCATTCGAT 86
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGAAAGAAGAAAAGATGAAATTTGCTTCGCCGGCACAACGTCGTCTCGAAACCATTCGAT 60
Query 87 CTCACATCGATACTTCTCCGACCAACGATCAATCATCATCTCTATTCCTCAACGCCACCG 146
||||| || ||||||||||| || ||||||||||||| |||| ||||||||||||||||
Sbjct 61 CTCACCTCTATACTTCTCCGGCCGACGATCAATCATC-TCTC--TTCCTCAACGCCACCG 117
Query 147 CTTCTTCTGCTTCACCTTTCTTTAAA-GAGGATAGCTACAGTGTTGTGCTTCCAGAAAAG 205
|||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| |||
Sbjct 118 CTTCTTCTGCTTCACCTTTC-TTAAACAAGGATGGCTACAGTGTTGTACTTCCAGAGAAG 176
Query 206 CTTGATACTGGAAAATGGAATGTCTACAGATCT-AAAAGATCGCCTACGAAACTCGTTAG 264
||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 177 CTTGATAATGGAAAATGGAATGTCTACAGATCTGCAAAG-TCGCCGACGAAACTCGTTAG 235
Query 265 TAGGTTCCCGGATCATCCTGAAATCGGGACTTTACATGACAATTTTGTACATGCTGTTGA 324
||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 236 CAGGTTCCAGGATCATCCTGAAATCGGGACTTTGCATGACAATTTTGTATATGCTGTTGA 295
Query 325 AACATATGCTGAAAACAAGTATCTTGGTACACGAGTTCGGTCCGATGGAACCATTGGAGA 384
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AACATATCCTGAGAACAAGTATCTTGGTACACGAGTTCGGTCCGATGGAACCATTGGAGA 355
Query 385 GTATTCATGGATGACATATGGAGAAGCAGCGTCTGAGCGACAAGCCATTGGTTCAGGACT 444
||| |||||||||||||||| |||| |||| ||||| |||||||| ||||||||||||||
Sbjct 356 GTACTCATGGATGACATATGCAGAAACAGCTTCTGAACGACAAGCTATTGGTTCAGGACT 415
Query 445 CTTGTTTCATGGAGTTAACCAAGGAGATTGCGTTGGACTCTATTTTATTAACAGACCAGA 504
| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 416 CCTGTTTCATGGAATTAACCAAGGAGCTTGTGTTGGACTCTATTTTATTAACAGACCAGA 475
Query 505 GTGGTTGGTTGTGGATCATGCTTGTGCAGCATATTCATTTGTCTCTGTTCCTTTATATGA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 GTGGTTGGTTGTGGATCATGCTTGTGCAGCATATTCATTTGTCTCTGTTCCTTTATACGA 535
Query 565 TACACTTGGTCCAGACGCTGTTAAGTTTGTGGTGAATCATGCTAATCTGCAAGCTATATT 624
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 536 TACACTTGGTCCAGACGCTGTTAAGTTCGTGGTGAATCATGCTACTCTGCAGGCTATATT 595
Query 625 TTGTGTACCACAAACCTTGAATATTTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGTGTACCACAAACCTTGAATATTTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCG 655
Query 685 TCTCATTGTGGTGGTGGGAGGGGCTGATGAGCATTTGCCATCACTTCCTCGAGGAACTGG 744
|||||||||||||||||||||||| || |||||||||||||||||||||| |||| ||||
Sbjct 656 TCTCATTGTGGTGGTGGGAGGGGCGGACGAGCATTTGCCATCACTTCCTCAAGGATCTGG 715
Query 745 AGTCACA-ATTGTATCATACCAAAAGCTATTGAGTCAGGGTCGAAGTAGCTTACATCCAT 803
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 AGTCA-ATATTGTATCATACCAAAAGCTTTTGAGTCAGGGTCGAAGTAGCTTACATCCAT 774
Query 804 TTTCGCCTCCAAAGCCAGAAGACATTGCAACCATATGCTACACAAGTGGAACCACAGGAA 863
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTTCCCCTCCAAAACCCGAAGACATTGCAACCATATGCTACACAAGTGGAACCACAGGAA 834
Query 864 CACCAAAGGGTGTTGTGTTGACTCATGGAAACTTGATCGCGAATGTCGCTGGTTCCAGTG 923
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 835 CACCAAAGGGTGTTGTGTTGACTCATGGAAACTTGATTGCAAATGTCGCCGGTTCCAGTG 894
Query 924 TGGAAGCAGAATTCTTTCCTTCAGATGTTTACATATCATATCTTCCTTTGGCGCACATAT 983
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGGAAGCAGAATTCTTACCTTCAGATGTTTACATATCATATCTTCCTTTGGCGCACATAT 954
Query 984 ATGAACGTGCAAATCAGATTATGGGGGTGTATGGTGGTGTTGCTGTCGGTTTCTATCAGG 1043
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 955 ATGAACGTGCAAATCAGATTATGGCTGTGTATGGTGGTGTTACTGTCGGTTTCTATCAGG 1014
Query 1044 GGGATGTCTTCAAGCTGATGGATGATTTTGCTGTGTTAAGACCAACAATATTCTGTAGTG 1103
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 GGGATGTCTTCAAGCTGATGGATGATTTTGCTGTGTTAAGGCCAACAATATTCTGTAGTG 1074
Query 1104 TCCCTCGCTTATATAATCGAATATATGATGGCATTACAAGTGCCGTAAAATCATCTGGGG 1163
|||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1075 TCCCCCGCTTATATAATCGAATATATGATGGAATCACTAGTGCCGTAAAATCATCTGGGG 1134
Query 1164 TTGTGaaaaaaaGGCT-TTTCGAAATTGCCTATAACTCAAAGAAGCAAGCGATCATTAAT 1222
|| | ||| ||||||| |||| || ||||||||||||||||||||||||||||||| |||
Sbjct 1135 TTATTAAACAAAGGCTGTTTC-AAGTTGCCTATAACTCAAAGAAGCAAGCGATCATAAAT 1193
Query 1223 GGGCGGACTCCTTCTGCATTTTGGGACAAGCTGGTGTTCAACAAAATAAAAGAAAAGCTT 1282
|| |||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1194 GGACGGAATCCGTCTGCATTTTGGGACAAACTGGTCTTCAACAAAATAAAAGAAAAGCTT 1253
Query 1283 GGTGGACGGGTTCGGTTTATGGGGTCTGGTGCTTCTCCTTTGTCACCTGATGTCATGGAT 1342
|||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1254 GGTGGACGGGTTCGCTTTATGGGGTCAGGTGCTTCTCCATTGTCACCCGATGTCATGGAT 1313
Query 1343 TTCTTGAGAATATGCTTTGGATGTTCGGTGCGTGAAGGGTATGGTATGACCGAGACTTCT 1402
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TTCTTGAGAGTATGCTTTGGATGTTCGGTGCGTGAAGGGTATGGTATGACCGAGACTTCT 1373
Query 1403 TGTGTCATAAGTGCTATGGATGATGGTGACAATTTATCTGGCCATGTCGGTTCCCCTAAT 1462
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1374 TGTGTCATAAGCGCTATGGATGATGGTGACAATTTATCTGGCCATGTTGGATCCCCTAAT 1433
Query 1463 CCAGCTTGCGAGGTAAAACTTGTGGATGTTCCCGAAATGAATTACACATCAGACGATCAA 1522
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1434 CCAGCGTGTGAGGTAAAACTTGTGGATGTTCCCGAAATGAATTACACATCAGATGATCAA 1493
Query 1523 CCATACCCACGTGGTGAAATCTGTGTAAGAGGACCAATCATCTTCAAAGGCTACTACAAA 1582
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CCATACCCACGTGGGGAAATCTGTGTAAGAGGACCAATCATCTTCAAAGGCTACTACAAA 1553
Query 1583 GATGAAGAACAAACGAGAGAAATTCTTGATGGAGATGGCTGGCTACACACAGGAGATATC 1642
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GATGAGGAACAAACGAGAGAAATTCTTGATGGAGATGGCTGGCTACACACAGGAGATATC 1613
Query 1643 GGGTTGTGGTTACCTGGTGGTCGGCTCAAGATCATAGACAGGAAGAAGAACATATTTAAG 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GGGTTGTGGTTACCTGGTGGTCGGCTCAAGATCATAGACAGGAAGAAGAACATATTTAAG 1673
Query 1703 TTGGCGCAAGGAGAATATATAGCACCAGAGAAGATCGAAAATGTTTATACCAAATGTAGA 1762
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1674 TTGGCGCAAGGAGAATATATAGCACCAGAGAAAATCGAAAATGTTTATACCAAATGCAGA 1733
Query 1763 TTCGTTTCGCAGTGTTTCATTCACGGTGATAGCTTCAATTCCTCTCTAGTAGCTATAGTT 1822
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1734 TTTGTTTCGCAGTGTTTCATACACGGTGATAGCTTCAATTCCTCTCTGGTAGCTATAGTT 1793
Query 1823 TCAGTCGACCCCGAAGTTATGAAAGATTGGGCTGCATCAGAAGGCATCAAGTATGAGCAT 1882
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 TCAGTTGACCCAGATGTTATGAAAGATTGGGCTGCATCAGAAGGCATCAAGTATGAGCAT 1853
Query 1883 CTAGGACAGCTCTGTAACGATCCAAGAGTGCGAAAGACTGTTCTTGCTGAGATGGATGAC 1942
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1854 CTAGGACAGCTCTGTAACGATCCAAGAGTACGTAAGGCTGTTCTTGCTGAGATGGATGAC 1913
Query 1943 CTTGGAAGAGAAGCTCAGTTGAGAGGGTTTGAGTTTGCAAAGGCTGTGACTTTGGTGCCA 2002
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1914 CTTGGAAGAGAAGCTCAGTTGAGAGGATTTGAGTTTGCAAAGGCTGTGACTTTGGTGCCA 1973
Query 2003 GAACCATTCACCTTGGAGAATGGACTTCTCACACCAACATTCAAGATAAAGAGACCTCAA 2062
|||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1974 GAACCATTCACCTTAGAGAATGGACTTTTGACACCAACATTCAAGATAAAGAGACCTCAA 2033
Query 2063 GCAAAAGCCTACTTTGCAGAAGCAATTAGC-AAAATGTATGCGGAAATCGCAGCCTCGAA 2121
|||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2034 GCAAAAGCTTACTTTGCAGAAGCAAT-ATCCAAAATGTATGCGGAAATCGCAGCCTCGAA 2092
Query 2122 CCCCATTCCTTCTAAACTGTGATGCTTTTTGCTTTGCTTAAAAGTGTTTCtttttttttG 2181
|||||| ||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 2093 CCCCATGCCTTCTAAACTGTGATGATTTA--CATTACTTAAAAGTGTTTCTTTTTTTT-- 2148
Query 2182 TATTACAAAGGTAATTGTAGAACTGTTAAAAGATCGGATTAGGATGAGGTAGATCGATCA 2241
||||||| ||||||||||||||||| ||||||||||||||| | | | |||||||||||
Sbjct 2149 -ATTACAA-GGTAATTGTAGAACTGT-AAAAGATCGGATTAG-A-G-G-TAGATCGATCA 2201
Query 2242 TTTGAAATAAAACAGATTCATGGTGTAATTTTCTTTGATACTGTTTTCCAGAATAAAGGA 2301
| ||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 2202 T--GAAATAAAACAGATTCATG----------CT--G-TA--GTTTTCCAGAATAAAGGA 2244
Query 2302 AG--CAGACTATG-TCCTAATCCTGAAATGGATGA 2333
|| ||||||||| |||||||||||||||||||||
Sbjct 2245 AGAGCAGACTATGATCCTAATCCTGAAATGGATGA 2279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88636000115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5