BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G27820.1

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942308 jgi|Araly1|942308|scaffold_602852.1                        566    9e-161


> Ahg942308 jgi|Araly1|942308|scaffold_602852.1
Length=387

 Score =  566 bits (306),  Expect = 9e-161
 Identities = 348/369 (94%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  99   TCAGATGGTGATTCCACCAGCAGTGAGACCACCACGTCTCTTCGACTACCTAAAACCTTA  158
            |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  19   TCAGATGGTGATTCCACCGGCAGTGAGACCACCACGTCTCTTCGACTACCTCAAACCTTA  78

Query  159  CGTGCTGAAAATGCATTTCACAAACAAGTTTGTCCACGCACAAGTCATCCACTCACCAAC  218
            ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  79   CGTGCTGAAAATGCATTTCACTAACAAGTTTGTTCACGCACAAGTCATCCACTCACCAAC  138

Query  219  AGCCACAGTGGCTTGCTCAGCGAGCTCGCAAGAGAAAGCATTGAGAGAAACAATGGACAT  278
            ||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct  139  AGCTACAGTTGCTTGCTCAGCGAGCTCACAGGAGAAAGCATTGAGGGAAACCATGGACAT  198

Query  279  CACACGCGACGTCGCTGCTGCTTCAAAGATTGGTAAAATTCTTGGAGAAAGACTCTTGAT  338
            ||| |||||||| || |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct  199  CACGCGCGACGTTGCCGCTGCTGCAAAGATTGGTAAAATTCTCGGAGAAAGACTCTTGAT  258

Query  339  GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAAAGAACAGAGGTATCATGGTAAAGT  398
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  259  GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAGAGAACAGAGGTATCATGGTAAAGT  318

Query  399  CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGTGTCAAGTTGCTCTGAAGATTATTCAA  458
            ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct  319  CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGCGTGAAGTTGCTTTGAAGATTATTCAA  378

Query  459  TAATCTGAA  467
            | ||| |||
Sbjct  379  TCATCCGAA  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23750577291


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5