BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27820.1 Length=648 Score E Sequences producing significant alignments: (Bits) Value Ahg942308 jgi|Araly1|942308|scaffold_602852.1 566 9e-161 > Ahg942308 jgi|Araly1|942308|scaffold_602852.1 Length=387 Score = 566 bits (306), Expect = 9e-161 Identities = 348/369 (94%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 99 TCAGATGGTGATTCCACCAGCAGTGAGACCACCACGTCTCTTCGACTACCTAAAACCTTA 158 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 19 TCAGATGGTGATTCCACCGGCAGTGAGACCACCACGTCTCTTCGACTACCTCAAACCTTA 78 Query 159 CGTGCTGAAAATGCATTTCACAAACAAGTTTGTCCACGCACAAGTCATCCACTCACCAAC 218 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 79 CGTGCTGAAAATGCATTTCACTAACAAGTTTGTTCACGCACAAGTCATCCACTCACCAAC 138 Query 219 AGCCACAGTGGCTTGCTCAGCGAGCTCGCAAGAGAAAGCATTGAGAGAAACAATGGACAT 278 ||| ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 139 AGCTACAGTTGCTTGCTCAGCGAGCTCACAGGAGAAAGCATTGAGGGAAACCATGGACAT 198 Query 279 CACACGCGACGTCGCTGCTGCTTCAAAGATTGGTAAAATTCTTGGAGAAAGACTCTTGAT 338 ||| |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 199 CACGCGCGACGTTGCCGCTGCTGCAAAGATTGGTAAAATTCTCGGAGAAAGACTCTTGAT 258 Query 339 GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAAAGAACAGAGGTATCATGGTAAAGT 398 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 259 GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAGAGAACAGAGGTATCATGGTAAAGT 318 Query 399 CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGTGTCAAGTTGCTCTGAAGATTATTCAA 458 ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 319 CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGCGTGAAGTTGCTTTGAAGATTATTCAA 378 Query 459 TAATCTGAA 467 | ||| ||| Sbjct 379 TCATCCGAA 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23750577291 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5