BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27920.1 Length=2358 Score E Sequences producing significant alignments: (Bits) Value Ahg942295 jgi|Araly1|942295|scaffold_602839.1 3133 0.0 > Ahg942295 jgi|Araly1|942295|scaffold_602839.1 Length=1969 Score = 3133 bits (1696), Expect = 0.0 Identities = 1875/1964 (95%), Gaps = 2/1964 (0%) Strand=Plus/Plus Query 252 TTTCTGGTTCTGTTGCAAAAATGTCGACGTCACCATCAATTTTATCCGTTTTGTCGGAAG 311 ||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| Sbjct 3 TTTTTGGTTCTGTTGC--AAATGTCGATGTCTCCATCAATTTTATCCGTTTTGTCGGAAG 60 Query 312 ATCTTCTTGTCCGAGTCTACGAATGTCTAGACCCACCGTGTCGGAAAACATGGCGTTTAA 371 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 61 ATCTTCTTGTCCGAGTCTACGAATTTCTAGATCCACCGTGTCGGAAAACATGGCGTTTAA 120 Query 372 TCAGCAAAGACTTCCTCCGAGTCGACTCATTGACTCGTACCACGATCCGAATCCTCCGGG 431 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 121 TCAGCAAAGACTTCCTCCGAGTCGACTCATTGAGTCGAACCACGATCCGAATCCTCCGGG 180 Query 432 TCGAATTTCTCCCGACGCTTCTCTTCAAATACCCAAACCTCTCTTCCCTCGACCTCTCCG 491 | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 TTGAGTTTCTCCCGACGCTTCTCTTCAAATACCCAAATCTCTCTTCCCTCGACCTCTCCG 240 Query 492 TCTGTCCAAAACTCGACGACGATGTCGTTTTACGTTTAGCATTAGACGGCGCCATTTCAA 551 ||||||| |||||||||||||| |||||||| ||| |||||||||||||| || |||| | Sbjct 241 TCTGTCCCAAACTCGACGACGACGTCGTTTTGCGTCTAGCATTAGACGGCACCGTTTCTA 300 Query 552 CGTTAGGCATTAAGTCACTGAACTTAAGCCGTTCCACCGCAGTTCGAGCTAGAGGACTTG 611 | ||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||| Sbjct 301 CATTAGGCATTAAGTCACTGAACCTGAGCCGATCCACCGCAGTTCGAGCCAGAGGACTTG 360 Query 612 AGACGTTGGCGCGTATGTGTCACGCTTTAGAGCGCGTCGACGTGTCTCATTGCTGGGGAT 671 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 361 AGACGTTGGCGCGTATGTGTCACGCTTTAGAGCGCGTTGATGTGTCTCATTGCTGGGGAT 420 Query 672 TCGGCGATAGAGAAGCGGCTGCGTTGTCGTCTGCGACGGGGCTGAGAGAGCTGAAGATGG 731 |||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct 421 TCGGTGATAGAGAAGCGGCGGCGCTGTCGTCTGCGGCGGGGCTGAGAGAGCTGAAGATGG 480 Query 732 ATAAGTGTTTGAGCTTAAGCGATGTTGGATTAGCGAGGATTGTTGTTGGATGTAGTAATC 791 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 481 ATAAGTGTTTGAGCTTAAGCGATGTTGGATTAGCGAGGATCGTTGTTGGATGTAGTAATC 540 Query 792 TGAATAAGATTAGCTTGAAATGGTGTATGGAGATCTCTGATCTTGGTATTGATCTTCTTT 851 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 541 TGAATAAGATTAGCTTGAAATGGTGTATGGAGATCTCTGATCTTGGGATTGATCTTCTCT 600 Query 852 GTAAGATTTGCAAAGGATTGAAATCTCTAGATGTCTCTTATCTTAAGATCACAAATGATT 911 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 601 GTAAGATTTGCAAAGGATTGAAATCTCTAGATGTCTCGTATCTTAAGATCACCAATGATT 660 Query 912 CGATCCGGTCTATAGCGTTGCTGGTAAAGCTTGAGGTTTTAGATATGGTAAGTTGTCCTT 971 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 661 CGATCCGGTCTATAGCTTTGCTGCTAAAGCTTGAGGTTTTAGATATGGTAAGTTGTCCTT 720 Query 972 TGATAGATGATGGTGGGTTACAGTTTCTAGAGAATGGTTCTCCTTCATTACAGGAGGTTG 1031 |||||||||||| ||| |||||||||||||||||||||||||||||| ||||| || | | Sbjct 721 TGATAGATGATGCTGGATTACAGTTTCTAGAGAATGGTTCTCCTTCACTACAGAAGATCG 780 Query 1032 ATGTCACTAGGTGTGACCGTGTGAGTTTGTCTGGCTTGATCTCTATAGTCAGAGGCCATC 1091 ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 781 ATGTCACGAGGTGTGAGCGTGTGAGTTTGTCCGGCTTGATCTCTATAGTCAGAGGCCATC 840 Query 1092 CTGATATTCAACTTCTTAAAGCCAGTCACTGTGTATCGGAAGTCTCTGGTAGCTTCTTAA 1151 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 841 CTGATATTCAACTTCTAAAAGCCAGTCACTGTGTATCCGAAGTCTCTGGTAGCTTCTTAC 900 Query 1152 AGTACATCAAAGGTTTGAAGCATCTCAAGACTATATGGATTGATGGAGCTCATGTTTCTG 1211 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AGTACATCAAAGCTTTGAAGCATCTCAAGACTATATGGATTGATGGAGCTCATGTTTCTG 960 Query 1212 ATTCCTCTCTTGTAAGTTTAAGCTCTAGCTGTAGATCTTTAATGGAGATTGGACTGAGCA 1271 ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| Sbjct 961 ATTCCTCTCTTGTAACCTTAAGCTCTAGCTGTAGATCTTTAGTGGAGATTGGATTGAGCA 1020 Query 1272 GATGTGTTGATGTGACGGATATTGGGATGATAAGTCTTGCACGCAACTGCTTAAACCTGA 1331 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1021 GATGTGTTGATGTGACGGATATTGGGATGATGGGTCTTGCACGCAACTGCTTAAACCTGA 1080 Query 1332 AAACATTAAATCTGGCGTGTTGCGGATTCGTGACGGATGTAGCCATCTCTGCTGTAGCTC 1391 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1081 AAACATTGAATCTGGCGTGTTGTGGATTCGTGACGGATGTAGCCATCTCTGCTGTAGCTC 1140 Query 1392 AGTCTTGCCGGAATCTAGGGACTTTAAAGTTAGAGTCTTGTCATTTGATAACTGAGAAAG 1451 |||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||| Sbjct 1141 AGTCTTGCCGAAATCTAGAGACTTTGAAGCTAGAGTCTTGTCATTTGATAACTGAGAAAG 1200 Query 1452 GTCTTCAATCGCTTGGATGTTACTCCATGCTTGTTCAAGAACTTGATCTTACTGACTGTT 1511 ||||||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||| Sbjct 1201 GTCTTCAATCGCTCGGATGTTACTCCAAGCTTCTTCAAGAACTCGATCTTACTGACTGTT 1260 Query 1512 ATGGTGTAAATGACAGAGGGCTAGAATATATCTCGAAGTGTTCGAATCTTCAAAGATTGA 1571 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1261 ATGGCGTAAATGACAGAGGGCTAGAATATATCTCAAAGTGTTCGAATCTTCAAAGATTGA 1320 Query 1572 AACTTGGACTCTGCACAAATATCTCAGACAAAGGGATTTTCCATATTGGTTCCAAATGTT 1631 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1321 AACTTGGCCTCTGCACAAATATCTCAGACAAAGGGATTTTTCATATTGGTTCCAAATGTT 1380 Query 1632 CGAAGCTTCTAGAACTTGATCTATACCGCTGTGCCGGTTTTGGAGATGATGGTTTAGCAG 1691 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1381 CGAAGCTTCTAGAACTTGATCTATACCGTTGTGCCGGTTTTGGAGATGATGGTTTAGCAG 1440 Query 1692 CTTTATCTCGAGGTTGCAAGAGCTTGAACCGACTCATTCTATCATACTGCTGTGAACTAA 1751 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 CTCTATCCCGAGGTTGCAAGAGCTTGAACCGACTCATTCTATCATACTGCTGTGAACTAA 1500 Query 1752 CTGACACCGGGGTTGAACAAATCCGGCAGCTAGAACTTCTAAGTCACCTCGAACTTCGAG 1811 ||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||| Sbjct 1501 CTGACACCGGGGTTGAACAAATCCGCCAGCTAGATCTTCTGAGTCACCTTGAACTTCGAG 1560 Query 1812 GGCTAAAGAATATAACCGGTGTTGGTTTAGCAGCCATTGCGTCCGGCTGCAAGAAATTGG 1871 ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| Sbjct 1561 GGCTAAAGAATATAACCGGTGTTGGTTTAGCTGCAATTGCGTGCGGCTGCAAGAAATTGG 1620 Query 1872 GTTACTTGGACGTTAAACTCTGCGAGAATATTGATGATTCGGGTTTTTGGGCGCTCGCTT 1931 ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1621 GTTACTTGGACCTGAAACTCTGCGAGAATATTGATGATTCGGGTTTCTGGGCGCTCGCTT 1680 Query 1932 ACTTCTCGAAAAACCTACGACAGATAAACTTGTGCAATTGCTCGGTGTCTGATACGGCTC 1991 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 ACTTCTCAAAAAACCTACGACAGATAAACTTGTGCAATTGCTCGGTGTCTGATACGGCTC 1740 Query 1992 TATGCATGTTGATGAGCAATCTGAGTCGGGTTCAAGACGTTGACTTAGTTCATCTGAGCC 2051 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1741 TATGCATGTTGATGAGCAATCTGAGTCGGGTTCAAGATGTTGACTTAGTTCATCTGAGCC 1800 Query 2052 GTGTGACTGTAGAAGGGTTTGAGTTTGCTCTAAGAGCCTGTTGCAATAGGCTCAAGAAGC 2111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1801 GTGTGACTGTAGAAGGGTTTGAGTTTGCTCTAAGAGCCTGTTGCAATAGGCTCAAGAAGC 1860 Query 2112 TTAAACTTCTCGCACCTCTCAGATTCTTGCTCTCATCGGAATTGCTCGAGACGCTTCATG 2171 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1861 TTAAACTTCTCGCACCTCTCCGATTCTTGCTCTCATCGGAATTGCTCGAGACACTTCATG 1920 Query 2172 CTCGTGGTTGCCGCATTAGATGGGACTGAAAACATAAAGAACAA 2215 |||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1921 CTCGTGGTTGCCGCATTAGATGGGACTGAAGACATAAATAACAA 1964 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88826451340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5