BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28020.1 Length=1549 Score E Sequences producing significant alignments: (Bits) Value Ahg489625 jgi|Araly1|489625|fgenesh2_kg.6__2759__AT5G28020.4 1539 0.0 Ahg489636 jgi|Araly1|489636|fgenesh2_kg.6__2770__AT5G28020.3 1149 0.0 Ahg949380 jgi|Araly1|949380|scaffold_801267.1 1118 0.0 > Ahg489625 jgi|Araly1|489625|fgenesh2_kg.6__2759__AT5G28020.4 Length=1014 Score = 1539 bits (833), Expect = 0.0 Identities = 938/990 (95%), Gaps = 2/990 (0%) Strand=Plus/Plus Query 345 AGTTTCAGAAAACAGACCAACATGGAAGATCGGTGCTTGATCAAGAACGATATCACTGAA 404 |||||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||| Sbjct 1 AGTTTCAGAAAACAGAACAACATGGAAGATCGGTGCTCGATAAAGAACGATGTCACTGAA 60 Query 405 TTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGT 120 Query 465 ATCGCTGCGAAGCTTGAGATGATGGAGCCTTGT-TCTAGCGTCAAAGACAGAATCGCGTA 523 |||||||| |||||||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct 121 ATCGCTGCAAAGCTTGAGATGATGGAGCCTT-TCTCTAGTGTCAAAGACAGAATCGCGTA 179 Query 524 TAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGAT 583 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 180 TAGTATGATCAAAGATGCAGAGGAGAAAGGATTGATTACTCCCGGAAAGAGTACATTGAT 239 Query 584 AGAGCCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCATGGGAGCTGCAAGAGGCTA 643 |||||||| |||||||||||||||||||||||||| || | ||||||||||||||||| Sbjct 240 TGAGCCAACGGCTGGTAACACCGGGATTGGTTTAGCCTGTGTCGGAGCTGCAAGAGGCTA 299 Query 644 TAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGC 703 ||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||| Sbjct 300 TAAAGTGATCCTTGTGATGCCTTCAACTATGAGTTTAGAGAGAAGAATCATCCTTAAGGC 359 Query 704 ACTAGGTGCAGAGCTTCATCTCTCGGACCAGCGCATAGGCCTTAAAGGAATGTTGGAGAA 763 | |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 360 ATTAGGTGCAGAGCTTCATCTCTCAGAACAGCGGATAGGCCTTAAAGGAATGTTGGAGAA 419 Query 764 AACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGAAAATCC 823 ||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 420 AACCGAAGCGATATTAAGCAAAACTCCTGGTGGTTACATTCCACAGCAGTTTGAAAATCC 479 Query 824 TGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGG 883 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 480 TGCAAACCCCGAGATTCATTACCAAACCACGGGACCGGAAATATGGAGAGATTCAGCTGG 539 Query 884 GAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAA 943 |||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 540 GAAAGTTGATATATTGGTTGCTGGTGTAGGGACTGGTGGAACAGCTACTGGAGTAGGGAA 599 Query 944 GTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCC 1003 ||||||||||||| |||| ||||| || |||||||||||||||||||||| ||||||||| Sbjct 600 GTTCCTCAAGGAGAAGAATAAAGATATTAAGGTTTGTGTGGTGGAACCAGAAGAAAGTCC 659 Query 1004 GGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGTATCGT 1063 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 660 GGTACTGAGCGGAGGTCAACCAGGTCCACATTTGATCCAGGGAATTGGCTCTGGTATCGT 719 Query 1064 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGC 1123 |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 720 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTAAAGTGACAGGTGAAGAAGC 779 Query 1124 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGG 1183 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 780 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTATTGGTGGGAATATCCTCTGG 839 Query 1184 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCAT 1243 |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct 840 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACACAGGAAAACTCAT 899 Query 1244 TGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGAT 1303 || |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | Sbjct 900 TGCGGTGGTTTTTCCCAGTGGGGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGGT 959 Query 1304 TAGATATGAAGCAGAGAATTTGCCTATTGA 1333 |||||||||||||||||||||||||||||| Sbjct 960 TAGATATGAAGCAGAGAATTTGCCTATTGA 989 > Ahg489636 jgi|Araly1|489636|fgenesh2_kg.6__2770__AT5G28020.3 Length=985 Score = 1149 bits (622), Expect = 0.0 Identities = 865/982 (88%), Gaps = 17/982 (2%) Strand=Plus/Plus Query 356 ACAGACCAACATGGAAGATC-G--GTGC-TTGATCAAGAACGATATCACTGAATTGATTG 411 |||||| ||||||||||| | | | | ||||||||||||||| ||||||||||||||| Sbjct 1 ACAGACAAACATGGAAGA-CAGAATTTCTTTGATCAAGAACGATGTCACTGAATTGATTG 59 Query 412 GTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGTATCGCTG 471 |||||||||||||||||||||| || || |||| |||| ||||||||| ||||| |||| Sbjct 60 GTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCGTATTGCTG 119 Query 472 CGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTATAGTATGA 531 | ||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||| Sbjct 120 CCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGACAGAATTGCATATAGTATGA 179 Query 532 TCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGATAGAGCCAA 591 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | | Sbjct 180 TCAAAGATGCAGAAGAAAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGGCGA 239 Query 592 CTGCTGGTAACACCGGGATTGGTTTAGCTTGCAT-GGGAGCTGCAAGAGGCTATAAAGTG 650 | | |||||| ||||||||||||||||| |||| ||| ||| ||||||| ||||||||| Sbjct 240 CGGGTGGTAATACCGGGATTGGTTTAGCCAGCATCGGG-GCTTCAAGAGGTTATAAAGTG 298 Query 651 ATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGCACTAGGT 710 |||||| |||||||| |||| |||||||||||||| |||||||||||||| ||| ||||| Sbjct 299 ATCCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATCATTCTGAGAGCATTAGGT 358 Query 711 GCAGAGCTTCATCTCTCGGACCA-GCGCATAGGCCTTAAAGGA-ATGTTGGAGAAAACTG 768 |||||| |||||||| | || || | | ||||| |||||||| | |||||||||| || Sbjct 359 GCAGAGGTTCATCTCACTGA-CATGAGTATAGGTATTAAAGGACA-GTTGGAGAAAGCTA 416 Query 769 AAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGA-AAATCCTGCA 827 ||| ||| |||||||||||||||||||||||||| ||||| || ||| | |||||||| | Sbjct 417 AAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTT-ATAAATCCTGAA 475 Query 828 AACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGGGAAA 887 |||||||||||||||||| |||||||||| ||||| || |||||||||||||| |||||| Sbjct 476 AACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAA 535 Query 888 GTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAAGTTC 947 |||||||| |||||||| || || || ||||||||||| | ||||||| |||||||||| Sbjct 536 GTAGATATCTTGGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTC 595 Query 948 CTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCCGGTA 1007 || || || ||||||||||||| |||||||||||||||||||| | |||||| ||||| Sbjct 596 CTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTA 655 Query 1008 CTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGT-ATCGTCCC 1066 || |||||||| ||||||||||||||||||| || ||||||||||||||| | | || Sbjct 656 CTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGA-AATTCC 714 Query 1067 ATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGCTAT 1126 | |||||||||||||| ||||||||||||||| ||||||||| ||||||| || ||||| Sbjct 715 AACCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACAGGTGAGGAAGCTAT 774 Query 1127 TGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGGAGC 1186 ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| Sbjct 775 TGAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGC 834 Query 1187 CGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCATTGT 1246 | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 835 CTCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGT 894 Query 1247 GGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGATT-A 1305 ||| ||||||| ||||||||||||||||||||||||||| || ||||||| || | | | Sbjct 895 GGTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTC-AGTCA 953 Query 1306 GATATGAAGCAGAGAATTTGCC 1327 |||||||||| ||||||||||| Sbjct 954 GATATGAAGCTGAGAATTTGCC 975 > Ahg949380 jgi|Araly1|949380|scaffold_801267.1 Length=1016 Score = 1118 bits (605), Expect = 0.0 Identities = 876/1005 (87%), Gaps = 25/1005 (2%) Strand=Plus/Plus Query 348 TTCAGAAAACAGACCAACATGGAAGATC-G--GTGC-TTGATCAAGAACGATATCACTGA 403 |||| || |||||||||||||||||| | | | | ||||||||||||||| ||||||| Sbjct 5 TTCA-AAGACAGACCAACATGGAAGA-CAGAATTTCTTTGATCAAGAACGATGTCACTGA 62 Query 404 ATTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCG 463 |||||||||||||||||||||||||||||| || || |||| |||| ||||||||| | Sbjct 63 ATTGATTGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCA 122 Query 464 TATCGCTGCGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTA 523 ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 123 TATTGCTGCCAAGCTTGAGATGATGGAGCCTTGTTCTAGCATCAAAGACAGAATCGCGTA 182 Query 524 TAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCC-GGAAAGAGTACATTGA 582 |||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||| Sbjct 183 TAGTATGATCAAAGATGCAGAAGAAAAAGGATTGATCAC-CCCTGGAAAGAGTACATTGA 241 Query 583 TAGAG-CCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCAT-GGGAGCTGCAAGAGG 640 | ||| ||| | | |||||| ||||| ||||||||||| |||| ||| ||| ||||||| Sbjct 242 TTGAGGCCA-CGGGTGGTAATACCGGAATTGGTTTAGCCAGCATCGGG-GCTTCAAGAGG 299 Query 641 CTATAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAG 700 ||||||||||| ||| |||||||| |||| |||||||||||||| ||||| |||||||| Sbjct 300 TTATAAAGTGATTCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATAATTCTGAG 359 Query 701 GGCACTAGGTGCAGAGCTTCATCTCTCGGACCA-GCGCATAGGCCTTAAAGGA-ATGTTG 758 ||| ||||||||||| || ||||| | || | | |||||||| |||||||| | ||| Sbjct 360 AGCATTAGGTGCAGAGGTTTATCTCACAGAT-ATGAGCATAGGCATTAAAGGACAA-TTG 417 Query 759 GAGAAAACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGA- 817 |||||| || ||| ||| |||||||||||||||||||||||||| ||||| || ||| | Sbjct 418 GAGAAAGCTAAAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTT-AT 476 Query 818 AAATCCTGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTC 877 |||||||| ||||||||||||||||||| |||||||||| ||||| || ||||||||||| Sbjct 477 AAATCCTGAAAACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTC 536 Query 878 AGCCGGGAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGT 937 || |||||||||||||| ||||| || || || || ||||||||||| | ||||||| Sbjct 537 TGCAGGGAAAGTAGATATCTTGGTGGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAAC 596 Query 938 AGGGAAGTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGA 997 |||||||||||| || || ||||||||||||| |||||||||||||||||||| | || Sbjct 597 AGGGAAGTTCCTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGA 656 Query 998 AAGTCCGGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGG 1057 |||| ||||||| |||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 657 AAGTGCGGTACTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGG 716 Query 1058 T-ATCGTCCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTG 1116 | | ||| | |||||||||||||| ||||||||||||||| ||||||||| | |||| Sbjct 717 TGAAATTCCAAC-CAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTG 775 Query 1117 AAGAGGCTATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATAT 1176 | || |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| Sbjct 776 AGGAAGCTATTGAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATAT 835 Query 1177 CCTCTGGAGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGA 1236 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 836 CCTCTGGAGCCTCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGA 895 Query 1237 AACTCATTGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCG 1296 ||||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||| Sbjct 896 AACTCATTGTGGTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCG 955 Query 1297 ATTCGATT-AGATATGAAGCAGAGAATTTGCCTA-TTGAATGAAT 1339 | || | | ||||||||||| ||||||||||| | |||||| ||| Sbjct 956 AGTC-AGTCAGATATGAAGCTGAGAATTTGCC-AGTTGAAT-AAT 997 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58011443135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5