BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28030.2
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489636 jgi|Araly1|489636|fgenesh2_kg.6__2770__AT5G28020.3 1552 0.0
Ahg949380 jgi|Araly1|949380|scaffold_801267.1 1533 0.0
Ahg489625 jgi|Araly1|489625|fgenesh2_kg.6__2759__AT5G28020.4 1075 0.0
> Ahg489636 jgi|Araly1|489636|fgenesh2_kg.6__2770__AT5G28020.3
Length=985
Score = 1552 bits (840), Expect = 0.0
Identities = 936/983 (95%), Gaps = 3/983 (0%)
Strand=Plus/Plus
Query 39 ACAAACCAACATGGAAGACCG--CGTC-TTGATCAAGAACGATGTCACTGAATTGATAGG 95
||| || |||||||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct 1 ACAGACAAACATGGAAGACAGAATTTCTTTGATCAAGAACGATGTCACTGAATTGATTGG 60
Query 96 TAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATTGCTGC 155
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 61 TAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCGTATTGCTGC 120
Query 156 CAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGTATGAT 215
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 121 CAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGACAGAATTGCATATAGTATGAT 180
Query 216 CAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAGGCAAC 275
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 CAAAGATGCAGAAGAAAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGGCGAC 240
Query 276 GGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGTGAT 335
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTGGTAATACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGTGAT 300
Query 336 CCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTCTAAGAGCATTAGGTGC 395
||||||||||||| |||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 301 CCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATCATTCTGAGAGCATTAGGTGC 360
Query 396 AGAGGTTCATCTCACTGACATTAGCATAGGCATTAAAGGACAGTTGGAGAAAGCTAAAGA 455
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 361 AGAGGTTCATCTCACTGACATGAGTATAGGTATTAAAGGACAGTTGGAGAAAGCTAAAGA 420
Query 456 GATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTTATTAATCCTGAAAATCC 515
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 421 GATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTTATAAATCCTGAAAACCC 480
Query 516 AGAGATTCATTATAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAAGTAGA 575
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAAGTAGA 540
Query 576 TATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTTCTTAA 635
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 TATCTTGGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTCCTTAA 600
Query 636 AGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCGGTACTCAG 695
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 AGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTACTCAG 660
Query 696 CGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATTCCAGCCAA 755
||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 661 CGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGAAATTCCAACCAA 720
Query 756 TTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATTGAAAC 815
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 TTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACAGGTGAGGAAGCTATTGAAAC 780
Query 816 AACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCCTCAGC 875
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCCTCAGC 840
Query 876 TGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCATTGTGGTTAT 935
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 841 AGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGTGGTTAT 900
Query 936 TTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGATATGA 995
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGATATGA 960
Query 996 AGCTGAGAATTTGCCAGTTGAAT 1018
|||||||||||||||||| ||||
Sbjct 961 AGCTGAGAATTTGCCAGTCGAAT 983
> Ahg949380 jgi|Araly1|949380|scaffold_801267.1
Length=1016
Score = 1533 bits (830), Expect = 0.0
Identities = 954/1014 (94%), Gaps = 7/1014 (1%)
Strand=Plus/Plus
Query 34 CAAAGACAAACCAACATGGAAGACCG--CGTC-TTGATCAAGAACGATGTCACTGAATTG 90
|||||||| ||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 7 CAAAGACAGACCAACATGGAAGACAGAATTTCTTTGATCAAGAACGATGTCACTGAATTG 66
Query 91 ATAGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATT 150
|| |||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||
Sbjct 67 ATTGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCATATT 126
Query 151 GCTGCCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGT 210
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 127 GCTGCCAAGCTTGAGATGATGGAGCCTTGTTCTAGCATCAAAGACAGAATCGCGTATAGT 186
Query 211 ATGATCAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAG 270
|||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 187 ATGATCAAAGATGCAGAAGAAAAAGGATTGATCACCCCTGGAAAGAGTACATTGATTGAG 246
Query 271 GCAACGGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAA 330
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCCACGGGTGGTAATACCGGAATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAA 306
Query 331 GTGATCCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTCTAAGAGCATTA 390
||||| |||||||||||| |||| ||||| ||||| |||||||| ||||| |||||||||
Sbjct 307 GTGATTCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATAATTCTGAGAGCATTA 366
Query 391 GGTGCAGAGGTTCATCTCACTGACATTAGCATAGGCATTAAAGGACAGTTGGAGAAAGCT 450
|||||||||||| ||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 367 GGTGCAGAGGTTTATCTCACAGATATGAGCATAGGCATTAAAGGACAATTGGAGAAAGCT 426
Query 451 AAAGAGATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTTATTAATCCTGAA 510
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 427 AAAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTTATAAATCCTGAA 486
Query 511 AATCCAGAGATTCATTATAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAA 570
|| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 487 AACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCTGCAGGGAAA 546
Query 571 GTAGATATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTT 630
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GTAGATATCTTGGTGGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTC 606
Query 631 CTTAAAGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCGGTA 690
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 607 CTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTA 666
Query 691 CTCAGCGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATTCCA 750
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 667 CTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGAAATTCCA 726
Query 751 GCCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATT 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATT 786
Query 811 GAAACAACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCC 870
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 787 GAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCC 846
Query 871 TCAGCTGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCATTGTG 930
||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 847 TCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGTG 906
Query 931 GTTATTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGA 990
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGA 966
Query 991 TATGAAGCTGAGAATTTGCCAGTTGAATGAGTAGTAGTAACGTAGGATTCAATA 1044
|||||||||||||||||||||||||||| | | |||||||||||||| |||||
Sbjct 967 TATGAAGCTGAGAATTTGCCAGTTGAAT-A--A-TAGTAACGTAGGATACAATA 1016
> Ahg489625 jgi|Araly1|489625|fgenesh2_kg.6__2759__AT5G28020.4
Length=1014
Score = 1075 bits (582), Expect = 0.0
Identities = 853/984 (87%), Gaps = 17/984 (2%)
Strand=Plus/Plus
Query 35 AAAGACA-AACCAACATGGAAGACCGCGT-CTTGATCAAGAACGATGTCACTGAATTGAT 92
||| ||| || |||||||||||| || || || ||| |||||||||||||||||||||||
Sbjct 9 AAA-ACAGAA-CAACATGGAAGATCG-GTGCTCGATAAAGAACGATGTCACTGAATTGAT 65
Query 93 AGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATTGC 152
||||||||||||||||||||||| || || |||| |||||||| ||||||||||| ||
Sbjct 66 TGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGTATCGC 125
Query 153 TGCCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGTAT 212
||| |||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||
Sbjct 126 TGCAAAGCTTGAGATGATGGAGCCTTTCTCTAGTGTCAAAGACAGAATCGCGTATAGTAT 185
Query 213 GATCAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAGGC 272
|||||||||||| || || ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 186 GATCAAAGATGCAGAGGAGAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGCC 245
Query 273 AACGGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGT 332
||||| ||||||||||||||||||||||||| | |||| ||| ||||||| ||||||||
Sbjct 246 AACGGCTGGTAACACCGGGATTGGTTTAGCCTGTGTCGGAGCTGCAAGAGGCTATAAAGT 305
Query 333 GATCCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTC-TAAGAGCATTAG 391
||||||| ||||||||||||| ||||||||||| || |||||||| | |||| |||||||
Sbjct 306 GATCCTTGTGATGCCTTCAACTATGAGTTTAGAGAGAAGAATCATCCTTAAG-GCATTAG 364
Query 392 GTGCAGAGGTTCATCTCACTG-ACATTAGCATAGGCATTAAAGGACA-GTTGGAGAAAGC 449
|||||||| |||||||| | | ||| | |||||| |||||||| | |||||||||| |
Sbjct 365 GTGCAGAGCTTCATCTCTCAGAACA-GCGGATAGGCCTTAAAGGA-ATGTTGGAGAAAAC 422
Query 450 TAAAGAGATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTT-ATTAATCCTG 508
||| |||||||||||||||||| ||||||||||| ||||| |||||| | |||||||
Sbjct 423 CGAAGCGATATTAAGCAAAACTCCTGGTGGTTACATTCCACAGCAGTTTGA-AAATCCTG 481
Query 509 AAAATCCAGAGATTCATTA-TAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGG 567
||| || ||||||||||| | ||||||||| ||||| || |||||||||||||| |||
Sbjct 482 CAAACCCCGAGATTCATTACCA-AACCACGGGACCGGAAATATGGAGAGATTCAGCTGGG 540
Query 568 AAAGTAGATATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAG 627
||||| ||||| || || || ||||| || ||||||||||| | ||||||| |||||||
Sbjct 541 AAAGTTGATATATTGGTTGCTGGTGTAGGGACTGGTGGAACAGCTACTGGAGTAGGGAAG 600
Query 628 TTTCTTAAAGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCG 687
|| || || || ||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 601 TTCCTCAAGGAGAAGAATAAAGATATTAAGGTTTGTGTGGTGGAACCAGAAGAAAGTCCG 660
Query 688 GTACTCAGCGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATT 747
||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| | |
Sbjct 661 GTACTGAGCGGAGGTCAACCAGGTCCACATTTGATCCAGGGAATTGGCTCTGGT-ATCGT 719
Query 748 CC-AGCCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGC 806
|| | |||||||||||||| ||||||||||||||| ||| ||||||| ||||| |||||
Sbjct 720 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTAAAGTGACAGGTGAAGAAGC 779
Query 807 TATTGAAACAACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGG 866
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 780 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTATTGGTGGGAATATCCTCTGG 839
Query 867 AGCCTCAGCTGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCAT 926
|||| |||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 840 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACACAGGAAAACTCAT 899
Query 927 TGTGGTTATTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGT 986
|| ||| ||||||| ||||| ||||||||||||||||||||| || ||||||| || ||
Sbjct 900 TGCGGTGGTTTTTCCCAGTGGGGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGGT 959
Query 987 CAGATATGAAGCTGAGAATTTGCC 1010
||||||||||| |||||||||||
Sbjct 960 TAGATATGAAGCAGAGAATTTGCC 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5