BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28050.2 Length=1053 Score E Sequences producing significant alignments: (Bits) Value Ahg489639 jgi|Araly1|489639|fgenesh2_kg.6__2773__AT5G28050.1 1242 0.0 > Ahg489639 jgi|Araly1|489639|fgenesh2_kg.6__2773__AT5G28050.1 Length=1004 Score = 1242 bits (672), Expect = 0.0 Identities = 756/795 (95%), Gaps = 11/795 (1%) Strand=Plus/Plus Query 217 TGGAAGCAAAAGATGGTACCATCTCCGTAGCTTCTGCATTTTCCGGTCACCAACAAGCTG 276 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 212 TGGAAGCAAAAGACGGTACCATCTCCGTGGCTTCTGCATTTTCCGGTCACCAACAAGCTG 271 Query 277 TTCACGATAGCGACCATAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTGG 336 | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 272 TGCACGACAGCGACCACAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTTG 331 Query 337 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAATA-ACGAGGTTGTCGCT 395 ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 332 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAA-AGATGAGGTTGTCGCT 390 Query 396 AGCTGCCACAATATGGTTTTGAAATATACTGACCCAACTGCACATGCTGAAGTCACTGCC 455 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 391 AGCTGCCACAATATGGTTTTGAAATATACAGACCCAACTGCCCATGCTGAAGTCACCGCC 450 Query 456 ATTAGAGAGGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCA 515 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 451 ATTAGAGAGGCATGCAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTATGCA 510 Query 516 TCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 575 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 511 TCTTGTGAGCCGTGTCCCATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 570 Query 576 GTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGAT 635 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 571 GTTTATGGAGCCAAAGCCGAAGCAGCCATAGCCATCGGGTTTGATGACTTCATCGCTGAT 630 Query 636 GCTTTGAGAGGCACGGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 695 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 GCTTTGAGAGGCACCGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 690 Query 696 AATGGCGCTGCGATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 755 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 AATGGTGCCGCTATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 750 Query 756 TAAAGCA-CTTCTCCATTACCACATTCTTCTTCTTCTTCT-C-C-TTCATGATGGTAATT 811 ||||| | |||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 751 TAAAG-ATCTTCTCCATTACCACATTCTTCTTCTTCTTCTTCTCCTTCATGATGGTAATT 809 Query 812 AGAAGTAGTAGAAGAAGAACTGCACTTGCTTTAACTTAAATAAATCTCTGTTTCAAATTG 871 ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| Sbjct 810 AGAAGTAGTAGAAGAAGAAATGCACTTGCTTTAACTAAAATAAATCTTTGTTTCAAATTA 869 Query 872 TTCATTTTAAAAACAGAAGGAAACGaaaaaaa-aaa---TCAATTTCGGTTCTTGTTGAC 927 ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| Sbjct 870 TTCATTTTAAAAACAGAAGGAAAAGAAAAAAAGAAAAACTCAATTTCGGTTCTTGTTGAC 929 Query 928 ACGATTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTCTCTGTCA 987 | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 930 ATGCTTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTTTCTGTCA 989 Query 988 AAATCTTTATTTTCT 1002 ||||||||||||||| Sbjct 990 AAATCTTTATTTTCT 1004 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39190358676 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5