BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28237.1
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471294 jgi|Araly1|471294|fgenesh2_kg.1__1248__AT5G28237.1 2451 0.0
Ahg907929 jgi|Araly1|907929|Al_scaffold_0002_1010 401 6e-111
Ahg907928 jgi|Araly1|907928|Al_scaffold_0002_1009 368 6e-101
Ahg907930 jgi|Araly1|907930|Al_scaffold_0002_1011 58.4 2e-07
> Ahg471294 jgi|Araly1|471294|fgenesh2_kg.1__1248__AT5G28237.1
Length=1531
Score = 2451 bits (1327), Expect = 0.0
Identities = 1449/1510 (96%), Gaps = 0/1510 (0%)
Strand=Plus/Plus
Query 56 AATGTCGTCCAGTAAAATCCAGGTACGAGGGCAGCCACTTCTTAGGGTTCCGGCAAGAAA 115
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 22 AATGTCGTCCGGTAAAATCCAGGTACGAGGGCAGCCACTTCCTAGGGTTCCAGCAAGAAA 81
Query 116 CCACCGTATGACACACTTGGTTGTTTGCGGCGTTTCCACAAAACGCCACCACCGTGAAAT 175
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CCACCATATGACACACTTGCTTGTTTGCGGCGTTTCCACAAAACGCCACCACCGTGAAAT 141
Query 176 CAATGCACTCAGCAGTAATAGTGGTCCATCGTTGGATTCGGTCCCAACAAGAACCGACAA 235
||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 142 CAACGCAATCAGCCGTAATAGAAGTCCATCGTTGGATTCGGTCCCAACAAGAACCGACAA 201
Query 236 GAGGCAGTTTCTTCGTGGTGACGGTAACGGTAAATTCGGGAGGTTCGGTGGGAAGTTTGT 295
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 202 GAGGCAGTTTCTTCGTGGTGACGGTAATGGTAAATTCGGGAGGTTCGGTGGGAAGTTTGT 261
Query 296 ACCGGAGACATTGATGTCTCGCCTGATAGAACTTGAAGACGAATTTAACTTTGTTAGGTG 355
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
Sbjct 262 ACCGGAGACATTGATGTCTCGCCTGATGGAACTTGAAGACGAATTTAATTTTGTTATGAG 321
Query 356 CGATCACGAATTTCAGGAGGAGCTTACCACAGCGTTAAGAGACTACGTAGGAAGAGAAAC 415
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CGATCATGAATTTCAGGAGGAGCTTACCACAGCGTTAAGAGACTACGTAGGAAGAGAAAC 381
Query 416 GCCTCTCTACTTCGCCGAACGTCTAACCGAACACTACAAGAACATAGTTCCAACCATCGA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GCCTCTCTACTTCGCCGAACGTCTAACCGAACACTACAAGAACATAGTTCCAACCATCGA 441
Query 476 AGGTGGACCAGAGATATACTTGAAACGGGAAGATCTTAGCCACTGTGGGTCTCACAAAAT 535
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AGGTGGACCTGAGATATACCTGAAACGGGAAGATCTTAGCCACTGTGGGTCTCACAAAAT 501
Query 536 CAATAATGCTCTCGCTCAGGCCATGATTTCCCGGCGGCTTGGTTGCAGCCGTGTGGTGGC 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CAATAATTCTCTCGCTCAGGCCATGATTTCCCGGCGGCTTGGTTGCAGCCGTGTGGTGGC 561
Query 596 GGCCACTGGAGCCGGACAACATGGAGTCGCCACAGCGGCTGCATGTGCAAAGCTCTCCTT 655
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GGCCACTGGATCCGGACAACATGGAGTCGCCACAGCGGCTGCATGTGCAAAGCTCTCCTT 621
Query 656 GGAGTGTACTGTTTTCATGGGAGCTGCTGATATAGAGAAACAATCCTTTAATGTACTTTC 715
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 622 GGAGTGTACCGTTTTCATGGGAGCTACTGATATAGAGAAACAATCCTTTAATGTACGTTC 681
Query 716 CATGAAACTCCTTGGTGCTCAGGTTATATCAGTGGAAGGAACATTCAAAGATGCAAGTTC 775
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 682 CATGAAACTCCTTGGTGCTCAGGTGAAATCAGTGGAAGGAACATTCAAAGATGCAAGTTC 741
Query 776 AGAAGCTATACGAAACTGGGTCGAAAACCTATATACCACATACTACTTATCGGGTACGGT 835
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 742 AGAAGCAATTCGAAACTGGGTCGAAAACCTATATACCACATACTACTTATCGGGTACTGT 801
Query 836 CGTAGGACCGCATCCGTGTCCGATAATAGTACGTGAGTTTCAATCTGTGATCGGGAAAGA 895
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GGTAGGACCACATCCGTGTCCGATAATAGTACGTGAGTTTCAATCTGTGATCGGGAAAGA 861
Query 896 GACAAGAAGGCAAGCCAAGCAACTATGGGGTGGTAAGCCTGATGTGTTGGTGGCCTGTGT 955
|||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 862 GACAAGAAGGCAAGCCAATCAACTATGGGGTGGTAAACCTGATGTATTGGTGGCTTGTGT 921
Query 956 GGGAAGTGGCTCAAACGCATTGGGTTTGTTCCATGAGTTTGTTGGGGATGAGGATGTGCG 1015
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 922 GGGAAGTGGCTCTAATGCATTGGGTTTGTTCCATGAGTTTGTTGGGGATAAGGATGTGCG 981
Query 1016 GTTAGTCGGTGTCGAGGCTGCGGGGCTTGGTCTGGATTCGGGGAAACATTCAGCTACTTT 1075
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 982 GTTAGTCGGTGTCGAGGCTGCTGGGCTCGGTCTGGATTCGGGGAAACATTCAGCTACTTT 1041
Query 1076 GGCCTTTGGAGATGTTGGTGTATACCATGGTTCCATGAGCTATTTATTGCAAGATGATCA 1135
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1042 GGCCGTTGGAGGTGTTGGTGTATACCATGGTTCTATGAGCTATTTATTGCAAGATGATCA 1101
Query 1136 AGGACAGATACTTAAACCACACTCCGTAGGTGTTGGGTTAGAGTATCCCGGAGTTGGACC 1195
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1102 AGGACAGATACTTAAACCACACTCCGTAGGAGTTGGGTTAGAGTATCCCGGAGTTGGACC 1161
Query 1196 GGAGATTAGTTTCATGAAAGAAACTGGCAGAGCGGAGTTCTATACAGCAACAGACGAAGA 1255
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1162 GGAGATTAGTTTCATGAAAGAAACTGGCAGAGCCGAGTTCTATACAGCAACAGACGAAGA 1221
Query 1256 AGCAATTCAAGCGTGCATGCGATTAAGCAGATTGGAGGGAATAATACCGGCATTAGAAGC 1315
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1222 AGCCATTCAAGCGTGCATGCGATTAAGCAGATTGGAGGGAATAATACCGGCATTGGAAGC 1281
Query 1316 GTCTCACGCGCTCGCGTTCCTCGACAAACTCGTGCCTACTCTTCGTGATGGAGCCAAGGT 1375
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1282 GTCTCACGCGCTCGCGTTCCTCGACAAACTCGTTCCTACTCTGCGCGATGGAGCCAAGGT 1341
Query 1376 GGTAGTGAACTGCAGTGGCCGTGGTGACAAAGATTTAGATACTCTCATCCAACGAGGCAT 1435
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 GGTCGTTAATTGCAGTGGCCGTGGTGACAAAGATTTAGATACTCTCATCCAACGAGGCAT 1401
Query 1436 GCCTTCTTCTTTTTGTTGACTCACCAAGATGCCACATTACACTTAACTCTTTTAGAAAAC 1495
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GCCCTCTTCTTTGTGTTGACTCACCAAGATGCCACATTACACTTAACTCTTTTAGAAAAC 1461
Query 1496 GTATGGTCCAATCACAACCATCATTATAGATGAAATACTAATATATCAATCATTATTTAA 1555
|||| ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1462 GTATCGTCTAATTACAACCATCATTATAGATGATATACTAATATATCAATTATTATTTAA 1521
Query 1556 TTTTTCGATT 1565
||||||||
Sbjct 1522 AATTTCGATT 1531
> Ahg907929 jgi|Araly1|907929|Al_scaffold_0002_1010
Length=252
Score = 401 bits (217), Expect = 6e-111
Identities = 239/250 (96%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 924 GGTGGTAAGCCTGATGTGTTGGTGGCCTGTGTGGGAAGTGGCTCAAACGCATTGGGTTTG 983
|||||||| |||||||| |||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1 GGTGGTAAACCTGATGTATTGGTGGCTTGTGTGGGAAGTGGCTCTAATGCATTGGGTTTG 60
Query 984 TTCCATGAGTTTGTTGGGGATGAGGATGTGCGGTTAGTCGGTGTCGAGGCTGCGGGGCTT 1043
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTCCATGAGTTTGTTGGGGATAAGGATGTGCGGTTAGTCGGTATCGAGGCTGCGGGGCTT 120
Query 1044 GGTCTGGATTCGGGGAAACATTCAGCTACTTTGGCCTTTGGAGATGTTGGTGTATACCAT 1103
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GGTCTGGATTCGGGGAAACATTCAGCTACTTTGGCCGTTGGAGATGTTGGTGTATACCAT 180
Query 1104 GGTTCCATGAGCTATTTATTGCAAGATGATCAAGGACAGATACTTAAACCACACTCCGTA 1163
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGTTCCATGAGATATTTATTGCAAGATGATCAAGGACAGATACTTAATCCACACTCCGTA 240
Query 1164 GGTGTTGGGT 1173
|| |||||||
Sbjct 241 GGAGTTGGGT 250
> Ahg907928 jgi|Araly1|907928|Al_scaffold_0002_1009
Length=297
Score = 368 bits (199), Expect = 6e-101
Identities = 223/235 (95%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 1256 AGCAATTCAAGCGTGCATGCGATTAAGCAGATTGGAGGGAATAATACCGGCATTAGAAGC 1315
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 63 AGCCATTCAAGCGTGCATGCGATTAAGCAGATTGGAGGGAATAATACCGGCATTGGAAGC 122
Query 1316 GTCTCACGCGCTCGCGTTCCTCGACAAACTCGTGCCTACTCTTCGTGATGGAGCCAAGGT 1375
|||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 123 GTCTCACGCGCTCGCGTTCCTCGAAAAACTCGTTCCTACTCTGCGCGATGGAGCCAAGGT 182
Query 1376 GGTAGTGAACTGCAGTGGCCGTGGTGACAAAGATTTAGATACTCTCATCCAACGAGGCAT 1435
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 183 GGTCGTGAATTGCAGTGGCCGTGGTGACAAAGATTTAGACACTCTCATCCAACGAGGCAT 242
Query 1436 GCCTTCTTCTTTTTGTTGACTCACCAAGATGCCACATTACACTTAACTCTTTTAG 1490
||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 243 GCCCTCTTCTTTTTGTTGACTCACCAAGATGCGACATTACACTAAACTCTTTTAG 297
Score = 108 bits (58), Expect = 2e-22
Identities = 58/58 (100%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1171 GGTTAGAGTATCCCGGAGTTGGACCGGAGATTAGTTTCATGAAAGAAACTGGCAGAGC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GGTTAGAGTATCCCGGAGTTGGACCGGAGATTAGTTTCATGAAAGAAACTGGCAGAGC 65
> Ahg907930 jgi|Araly1|907930|Al_scaffold_0002_1011
Length=1317
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 798 GAAAACCTATATACCACATACTACTTATCGG 828
|||||||||||||||||||||||||||||||
Sbjct 1284 GAAAACCTATATACCACATACTACTTATCGG 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5