BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28300.1
Length=2180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489647 jgi|Araly1|489647|fgenesh2_kg.6__2781__AT5G28300.1 2994 0.0
> Ahg489647 jgi|Araly1|489647|fgenesh2_kg.6__2781__AT5G28300.1
Length=2148
Score = 2994 bits (1621), Expect = 0.0
Identities = 2032/2213 (92%), Gaps = 98/2213 (4%)
Strand=Plus/Plus
Query 1 AATAAACAATAACTATTCATTAATGG-TTAAATACCAACCACAGATATTTTATTTTTAAA 59
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1 AATAAACAATAACTATTCATTAATGGCTT-AATACCAACCACAGATATTTTACTTTTAAA 59
Query 60 TAAATATAAGGTCTTGCCCTC-aaaatg-acaa-aaaaaatagcaatataaaaagagaga 116
| ||| || ||| |||||| |||||| | || ||||||||||||||||||||||||||
Sbjct 60 -ATATA-AACATCTAGCCCTCAAAAATGAAAAATAAAAAATAGCAATATAAAAAGAGAGA 117
Query 117 ctaaaaaagagagtgaaaagagagatttcgatgtgaacaaaaaaagaaga-at-aagaat 174
|| |||||||||| ||||||||||||||||||||||| ||| ||||| | || ||||||
Sbjct 118 CT-AAAAAGAGAGAGAAAAGAGAGATTTCGATGTGAA-TAAATAAGAA-ACATAAAGAAT 174
Query 175 aaaagaaaaTGTTTGATGGTGGAGTACCTGAGCAGATCCACCGTTTCATAGCTTCTCCAC 234
||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 175 AAAAG-AAATGTTTGATGGTGGAGTACCGGAGCAGATCCACCGGTTCATAGCATCTCCAC 233
Query 235 CGCCACCGCCTCCGCTTCCGCCGCATCAACCGGCGGCGGAAAGATCACTACCTTTTCCTG 294
|||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 234 CGCCGCCTCCTCCGCTTCCGCCGCATCAACCGGCGGCTGAAAGATCACTCCCTTTTCCTG 293
Query 295 TCTCATTCTCTTCCTTTAACACCAATCATCAACCTCAGCATATGTTGAG-CTTGGATAGC 353
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||
Sbjct 294 TCTCATTCTCTTCCTTTAACACCAATCATCAAGCTCAGAATATGTTGAGCCTT-GATAGC 352
Query 354 CGTAAGatcattcaccatcatcatcatcatcatcaccatgacatcaAAGATGGTGGTGCT 413
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 353 CGTAAGATCATTCACCATCATCATCATCATCATCACCATGATATCAAAGATGGTGGTG-- 410
Query 414 ACTACTGGTGAGTGGATAGGTCAGACGGATCATGATGATAGCGATAatcatcatcaacat 473
|||||| |||||||||| |||| ||||||||||||| | |||||||||||| |||
Sbjct 411 -CTACTGCTGAGTGGATAAGTCACACGGATCATGATG---GTGATAATCATCAT---CAT 463
Query 474 catcatcatcatcCATGGTGTAGTGATGAAGTTCTTGCTCTTCTTAGGTTCAGATCTACA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CATCATCATCATCCATGGTGTAGTGATGAAGTTCTTGCTCTTCTTAGGTTCAGATCTACA 523
Query 534 GTGGAGAATTGGTTCCCTGAATTCACTTGGGAGCATACTTCAAGAAAGTTGGCAGAAGTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GTGGAGAATTGGTTCCCTGAATTCACTTGGGAGCATACTTCAAGAAAGTTGGCAGAAGTT 583
Query 594 GGTTTTAAGAGGAGTCCACaagaatgcaaagagaaatttgaagaagaagagagaagaTAT 653
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 584 GGTTTCAAGAGGAGTCCACAAGAATGCAAAGAGAAATTTGAAGAAGAGGAGAGAAGATAT 643
Query 654 TTCAATAGcaacaacaacaacaacaacaacaCTAATGATCATCAACACATCGGCAATTAT 713
|||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 644 TTCAATAG---------TAACAACAACAACACTAATGATCATCCACATATCGGCAATTAC 694
Query 714 AACAACAAGGGAAATAATTATAGGA-TATTTAGTGAGGTTGAAGAGTTTTATCATCATGG 772
|||||||||||||||||||||| || |||| ||||||||||||||| | |
Sbjct 695 AACAACAAGGGAAATAATTATA-GAGTATTCAGTGAGGTTGAAGAG--------T--T-- 741
Query 773 TCATGACAATGAACATGTTTCATCAGAAGTTGGGGATAACCAAAACAAGAGGACCAATTT 832
| | ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 742 T--T----ATG---ATGTTTCATCAGAAGTTGGGGATAACCAAAACAAGAGGAACAATTC 792
Query 833 AGTAGAAGGAAAAGGAAACGTGGGAGAAACGGT------ACAAGACTTAATGGCGGAGGA 886
|||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 793 AGTAGAAGCAAAAGGAAACGTGGGAGAAACGGTAACGGGACAAGACTTAATGGAGGAGGA 852
Query 887 CAAATTAAGAGATCAGGATCAGGGTCAAGTAGAAGAAGCATCAATGGAGAATCAAAGAAA 946
||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 853 CAAATTAAGAGATCATGATCAGGGTCAAGTAGAGGAAGCATCAATGGAGAATAAAATAAA 912
Query 947 CTCTATTGAGGTTGGAAAAGTTGGAAACGTAGAAGATGATGCCAAGTCATCATCATCATC 1006
||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 913 CTCCATTGAGGTTGGCAAAGTTGGAAACGTAGAGGAGGATGCGAAGTCATCATCATCGTC 972
Query 1007 AAGCTTGATGATGATCATgaaggagaagaagaggaagaagaggaagaaagagaaagagag 1066
|||||||||||||||||| ||||||||||||| || ||||| ||||||| ||||||||||
Sbjct 973 AAGCTTGATGATGATCATAAAGGAGAAGAAGAAGAGGAAGAAGAAGAAACAGAAAGAGAG 1032
Query 1067 GTTTGGTGTGTTAAAAGGGTTTTGTGAGGGTCTAGTGAGGAACATGATAGCTCAACAAGA 1126
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1033 GTTTGGTGTGTTGAAAGGGTTTTGTGAGGGTCTTGTGAGGAACATGATAGCTCAACAAGA 1092
Query 1127 GGAGATGCATAAGAAACTCCTggaagatatggtgaagaaggaagaagagaagatagcgag 1186
||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1093 GGAAATGCATAAGAAGCTCCTAGAAGATATGGTGAAGAAGGAAGAAGAAAAGATAGCGAG 1152
Query 1187 agaggaagcttggaagaagcaagagattgagagagttaacaaagaggtagagattagagC 1246
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1153 AGAGGAAGCTTGGAAGAAGCAAGATATTGAGAGAGTTAACAAAGAGGTAGAGATTAGAGC 1212
Query 1247 ACAAGAACAAGCCATGGCTAGTGATAGAAACACCAACATCATCAAGTTCATATCCAAGTT 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ACAAGAACAAGCCATGGCTAGTGATAGAAACACCAACATCATCAAGTTCATATCCAAGTT 1272
Query 1307 TACAGACCATGATCTTGATGTTGTCCAAAACCCAACAAGCCCT-TCTCAAGACTCATCTT 1365
|| |||||||||||||||||||||||||| |||||||| | | ||||||||||||||||
Sbjct 1273 CACTGACCATGATCTTGATGTTGTCCAAAATCCAACAAGTC-TGTCTCAAGACTCATCTT 1331
Query 1366 CTTTAGCTCTACGAAAAACCCAAGGCAGAAGAAAGTTTCAAACT-TCATCATCACTATTA 1424
|||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1332 CTTTAGCTCTACCAAAAACCCAAGGCAGAAGAAAGTTTCAAACTAT-ATCATCACTATTA 1390
Query 1425 CCTCAAACCCTAACTCCACATAACCTTTTAACCATTGACAAATCACTTGAACCTTTTTCT 1484
||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 1391 CCTCAAACCCTAACTCCACATAACCCTTTAACCAATGACAAATCACTTGAACC-----C- 1444
Query 1485 ACTaaaaccctaaaacccaaaaaccaaaacccaaaacctccaaaaaGCGATGATAAAAGT 1544
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1445 ACTAAAACCCTAAAAACCAAAACCCAAACCCCAAAACCTCCAAAAAGCGATGATAAAAGT 1504
Query 1545 GATCTTGGCAAGAGATGGCCAAAGGATGAAGTGTTGGCTCTGATCAACATTAGAAGAAGT 1604
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1505 GATCTTGGCAAGAGATGGCCAAAGGATGAAGTGTTGGCTCTTATCAACATTAGACGAAGT 1564
Query 1605 ATCAGTAACATGAATGATGATGATCATAAAGATGAGAACTCATTATCAACATCTTCAAAA 1664
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1565 ATCAGTAACATGAATGATGATGATCATAAAGATGAGAACACATTATCAACTTCTTCAAAA 1624
Query 1665 GCTGTTCCATTATGGGAAAGAATATCCAAGAAAATGTTGGAGATTGGGTACAAGAGAAGT 1724
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1625 GCTGTTCCATTATGGGAAAGAATATCCAAGAAAATGTTGGAGATTGGGTACCAGAGAAGC 1684
Query 1725 GCCAAAAGATGCAAAGAGAAATGGGAAAACATCAACAAGTATTTTAGGAAGACAAAAGAT 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 GCCAAAAGATGCAAAGAGAAATGGGAAAACATCAACAAGTATTTTAGGAAGACAAAAGAT 1744
Query 1785 GTTAACAAGAAGAGACCACTTGACTCAAGGACTTGTCCTTATTTTCACCAACTCACAGCT 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GTTAACAAGAAGAGACCACTTGACTCAAGGACTTGTCCTTATTTTCACCAACTCACAGCT 1804
Query 1845 TTATACAgccaacca-ccaacagggaccaccgccaccaccgccaccacggccacGTCAGC 1903
|||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1805 TTATACAGCCAACCCTCCA-CAGGGACCACC---ACCACCGCCACCACCGCCACGTCAGC 1860
Query 1904 CAGAGATCTAGACA-CCCGACCCGA-G-G-AAAACCGGGTTGGATCCCAAGATCCTGATA 1959
| |||||||| | | |||||||||| | | ||||||||||||||||| ||||| |||||
Sbjct 1861 CGGAGATCTA-ATAACCCGACCCGATGAGGAAAACCGGGTTGGATCCGAAGATAATGATA 1919
Query 1960 TTTCTGTACCCATGCATGTAGATGGAGATGGTGCTGGCGATAAAAGCAATGTTCAGTTTT 2019
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TTTCTGTAGCCATGCATGTAGATGGAGATGGTGCTGGCGATAAAAGCAATGTTCAGTTTT 1979
Query 2020 CAGGTTTCGATCTTGAGTTCTAATAAATCCCTTCTATATATATATTATCAGTTATATTCT 2079
| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1980 CCGGTTTCGATCTTGAGTTCTAATAAATCC-TT-TATATATATATTATCAGTTTTATTCT 2037
Query 2080 CT-TTTTCT----G---CTT-TTT--GCTAAAACCTCATTTTTGGTTATTATGATAA-AG 2127
|| |||| | | ||| ||| |||||||||||||||||||||||||||| || ||
Sbjct 2038 CTCTTTTTTTTTTGTTTCTTCTTTTTGCTAAAACCTCATTTTTGGTTATTATGA-AATAG 2096
Query 2128 TTATTATATATGAATAGTGTTACTGTTTTAATGCTATTAGTGGGAAACGTATC 2180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TTAT-ATATATGAATAGTGTTACTGTTTTAATGCTATTAGTGGGAAACGTATC 2148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82046387730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5