BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28500.1 Length=1614 Score E Sequences producing significant alignments: (Bits) Value Ahg489651 jgi|Araly1|489651|fgenesh2_kg.6__2785__AT5G28500.1 2126 0.0 Ahg905007 jgi|Araly1|905007|Al_scaffold_0003_2135 217 3e-55 > Ahg489651 jgi|Araly1|489651|fgenesh2_kg.6__2785__AT5G28500.1 Length=1424 Score = 2126 bits (1151), Expect = 0.0 Identities = 1339/1428 (94%), Gaps = 20/1428 (1%) Strand=Plus/Plus Query 1 AACAACCACCATCATCGTCTCCA--CTCTC-TCA--T---CACCACCATGCTTTCTCTAA 52 |||||| |||||| ||||||||| ||||| ||| | |||||||||||||||||| | Sbjct 1 AACAACAACCATCTTCGTCTCCACTCTCTCATCACCTCACCACCACCATGCTTTCTCTCA 60 Query 53 CTGCAACAACTCTCAGTTCCTCCA-TTTTCACACAATCCAAAACCCATGGATTCTTCAAT 111 ||||||||||||||| |||| || | |||||||||||||||||||||||||||| || | Sbjct 61 CTGCAACAACTCTCAAATCCT-CACTCTTCACACAATCCAAAACCCATGGATTCTCCACT 119 Query 112 ACCCGACCCGTTTACCGAAAACCCTTCACCACCATCACCTCCGCTTTAATCCCCGCTTCA 171 |||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||| Sbjct 120 ACCCGACCCGTTTACCCAAAACCCTTCACCACCATAACCGCCGCCTTAATCCCCGCTTCA 179 Query 172 AACCGTCAAGCTCCACCAAAACAACAACTCTATCAACCATTCCGTCCACCACCATCACCA 231 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AACCGTCAAGCTCCACCACAACAACAACTCTATCAACCATTCCGTCCACCACCATCACCA 239 Query 232 ATCCCTCCAAAGTTCCGATCACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGT 291 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATCCCTCCAAAATTCCGATCACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGT 299 Query 292 CTCGGTCTCTGGTTCGAATACGCTCCACTCATTTCCTCCTTATACACTGAAGGATTCACT 351 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 300 CTCGGTCTCTGGTTCGAATACGCTCCACTCATTTCCTCCTTATACACTGAAGGCTTCATT 359 Query 352 CCTCCATCAATCGAAGAACTCACCGGAATCTCCGGTGTCGAACAGAA-CAGTCTCATCGT 410 ||||||||||||||||||||||||||| | || |||||||||||||| | |||||||||| Sbjct 360 CCTCCATCAATCGAAGAACTCACCGGACTTTCTGGTGTCGAACAGAATC-GTCTCATCGT 418 Query 411 CGGCGCGCAAGTTCGAGACTCTTTAGTTCAATCCGGTGCCAAACCGGAGCTTATAGCTGC 470 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 419 CGGCGCGCAAGTTCGTGACTCTTTAGTTCAATCCGGTGCCAAACCGGAGCTGATCGCTGC 478 Query 471 GTTTGACACAAATGGAGCCGAGCTTCTCTACGAGATTCGTCTTTTAAACACAACTCAACG 530 ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 479 GTTTGACACCGGTGGAGCCGAGCTTCTCTACGAGATTCGTCTTTTGAATACAACTCAACG 538 Query 531 TGTAGCTGCTGCTGAATACATTGTTGATCACGGTTTCGATACGAAAGGAGCTGGAGATCT 590 | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 539 TATAGCTGCTGCTGAATACATTGTTGATCACGATTTCGATACGAAAGGAGCTCAAGATCT 598 Query 591 TGCGAGAGCGATTAAAGATTTTCCGCATCGTCGTGGCGACGTTGGTTTGGGA-GACTTTG 649 |||||||||||||||||||| |||||||||||| || || ||||| | |||| || |||| Sbjct 599 TGCGAGAGCGATTAAAGATTATCCGCATCGTCGCGGTGATGTTGGAT-GGGAAGATTTTG 657 Query 650 ATTATAACTTACCTGGAGATTGTTTGTCTTTTATGCTTTATAGGAAAAGTAGAGAGCATC 709 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 658 ATTATAACTTACCTGGAGATTGTTTGTCTTTTATGCTTTATAGGAAAAGTAGAGAATATC 717 Query 710 GGAGTCCGTCGGAGATTCGAACTACATTACTCGAACAAGCTCTTGAAACCGCGGTAACAG 769 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 718 GGAGTCCGTCGGAGATTCGAACTACATTGCTCGAACAAGCTCTTGAAACTGCGGTAACAG 777 Query 770 AGAAGGCGAAAAAGGCGGTG-TTGAGGGAGTTACATGgagagagtgaagaagagagagtt 828 |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 778 AGAAAGCGAAAAAGGCGGTGGTT-AGGGAGTTACATGGAGAGAGTGAAGAAGAGAGAGCT 836 Query 829 aaagaagaggagaTAAAAATCATTCGTGTTCCTGTAGTGAGATTAAGGTTTGGAGAAGTA 888 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 837 AATGAAGAGGAGATAAAAATCATTCGTGTTCCTGTAGTGAGATTGAGGTTTGGAGAAGTA 896 Query 889 GCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAGCAGAAGAAGGAGAAGAGAAG 948 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 897 GCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAGCAGAGGAAGGAGAGGAGAAG 956 Query 949 CTTCTTGAAGCACCAATGGAGTTTGAAAGTGGAGGAGAGTTTGGTGTAGTGGAAGCTGAG 1008 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 957 CTTCTTGAAGCTCCAATGGAGTTTGAAACTGGAGGAGAGTTTGGTGTAGTGGAAGCTGAG 1016 Query 1009 AAAGATTGGAGTAGATGGGTGGTTTTACCGGGTTGGGATCCCGTGGTTGCGGTTAGGAAA 1068 |||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct 1017 AAAGATTGGAGTAGATGGGTTGTTTTACCGGGTTGGGAACCCGTTGTGGCGGTTAGGAAA 1076 Query 1069 GGAG---TGGCGGTTTCGTTTAGCGATGATAGGGAAGTTTTGCCGTGGAACGGGAAAGGA 1125 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1077 GGAGGAGTGGCGGTTTCGTTTAGAGATGATAGGGAAGTTTTGCCGTGGAACGGGAAAGAA 1136 Query 1126 GAGGCGATAATGGTTGTGATCGATAGGGAAAAGAAGACGGTGGAAGCTGATAATGGATAC 1185 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1137 GAGGCGATAATGGTTGTGATCGATAGGGAGAAGAAGACGGTGGAAGCGGATAATGGATAT 1196 Query 1186 TACTACCTTGTTGTGGCTGATGGTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAG 1245 ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1197 TACTATCTTGTTGTGGCTGAAGGTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAG 1256 Query 1246 AAAGGAGTGAATGAGAGCTTAGGAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGAT 1305 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1257 AAAGGAGTGAATGAGAGTTTAGGGATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGAT 1316 Query 1306 GATGATGAGTGGCAGATAAATGATGAAGATTGGGATTAGAATTCAATTAGAAGAATAGTT 1365 |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1317 GATGATGATTGGCAGATAAATGATGAAGATTGGGATTAGAATTCAATTAGAGGGATAGTT 1376 Query 1366 AAACAAATACTTA-TATGCTTTTGGTTTTGGCAAATATGTAAtttttt 1412 |||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct 1377 AAACAAATACTTTGTATGCTTTTGGTTCTGGAAAATATGTAATTTTTT 1424 > Ahg905007 jgi|Araly1|905007|Al_scaffold_0003_2135 Length=273 Score = 217 bits (117), Expect = 3e-55 Identities = 133/140 (95%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 1208 GTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAGAAAGGAGTGAATGAGAGCTTAG 1267 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 134 GTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAGAAAGGAGTGAATGAGAGTTTAG 193 Query 1268 GAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGATGATGATGA-G-T-GGCAGATAA 1324 | |||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||| Sbjct 194 GGATGGTTGTTTTGGTGGTTAGGCCGCCGAGAGATGATGATGATGATGATTGGCAGATAA 253 Query 1325 ATGATGAAGATTGGGATTAG 1344 |||||||||||||||||||| Sbjct 254 ATGATGAAGATTGGGATTAG 273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60487309060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5