BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28770.2
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489663 jgi|Araly1|489663|fgenesh2_kg.6__2797__AT5G28770.2 1524 0.0
> Ahg489663 jgi|Araly1|489663|fgenesh2_kg.6__2797__AT5G28770.2
Length=1061
Score = 1524 bits (825), Expect = 0.0
Identities = 985/1060 (93%), Gaps = 20/1060 (2%)
Strand=Plus/Plus
Query 76 atggaaaaagTTTTCTCCGACGAAGAAATCTCCGGTAACCATCACTGGTCGGTTAATGGA 135
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 21 ATGGAAAAAGTTTTCTCCGACGAAGAAATCTCAGGTAACCATCATTGGTCGGTTAATGGA 80
Query 136 ATGACGTCGTTGAATCGCAGTGCTTCCGAATGGGCATT-CAATCGTTTCATACAAGAATC 194
| ||| || ||||||| ||||| |||||||||||||| ||| |||||| |||||||||
Sbjct 81 ACAACGGCGATGAATCGTAGTGCCTCCGAATGGGCATTCCAA-CGTTTCTTACAAGAAT- 138
Query 195 CTCCGCCGCTGCAGACGACGGAGAATCTACGACGGCGTGTGGTGTTTCCGTCTCCTCTCC 254
|| | | | | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 139 CT-------T-CTG-C--CGGAGAGTCTACGACGGCGTGTGGTGTTTCCGTCTCTTCTCC 187
Query 255 TCCTAATGTTCCTGTAGATTCAGAGGAATACAGAGCATTTCTCAAGAGTAAACTTAATCT 314
||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 188 TCCGAATGTTCCTGTTGATTCAGATGAATACAGAGCATTTCTGAAGAGTAAACTTAATCT 247
Query 315 TGCTTGTGCTGCTGTCGCCATGAAAAGGGGAACTTTCATCAAACCTCAGGATACTTCTGG 374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 248 TGCTTGTGCTGCTGTCGCCATGAAAAGGGGATCTTTCATCAAACCTCAGGATACTTCTGG 307
Query 375 TAGATCTGACAATGGTGGAGCCAATGAATCAGAACAAGCCTCTCTTGCTTCTTCCAAAGC 434
||||||||||||||||||||||| || ||||||||||| |||||| |||||||| |||||
Sbjct 308 TAGATCTGACAATGGTGGAGCCACTGCATCAGAACAAGGCTCTCTAGCTTCTTCTAAAGC 367
Query 435 TACACCAATGATGAGCAGTGCTATAACAAGTGGATCTGAGCTCTCTGGTGATGAAGAAGA 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CACACCAATGATGAGCAGTGCTATAACAAGTGGATCTGAGCTCTCTGGTGATGAAGAAGA 427
Query 495 AGCTGATGGTGAAACTAATATGAACCCTACTAATGTTAAACGCGTTAAAAGGATGCTCTC 554
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 428 AGCTGATGGTGAAACTAATATGAACCCTACTAATGTTAAACGCGTGAAAAGGATGCTCTC 487
Query 555 TAATAGAGAATCAGCTAGACGGTCCAGAAGAAGAAAGCAAGCACACTTGAGTGAGCTAGA 614
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 488 TAACAGAGAATCAGCTAGACGGTCCAGAAGACGAAAGCAAGCACACTTGAGTGAGCTAGA 547
Query 615 GACACAAGTTTCACAGCTTCGTGTAGAGAATTCAAAACTCATGAAGGGTCTCACTGATGT 674
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 548 GACACAAGTTTCACAGCTGCGTGTAGAGAATTCAAAGCTCATGAAGGGTCTCACTGATGT 607
Query 675 AACTCAAACATTCAATGATGCATCTGTAGAAAACAGAGTTTTAAAAGCCAATATTGAGAC 734
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 AACTCAGACATTCAATGAGGCATCTGTAGAAAACAGAGTTTTAAAAGCCAATATCGAGAC 667
Query 735 ACTACGAGCAAAGGTGAAAATGGCTGAAGAGACAGTGAAGAGACTCACTGGCTTTAACCC 794
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 668 TTTACGAGCAAAGGTGAAAATGGCTGAAGAGACTGTGAAGAGACTCACTGGCTTTAACCC 727
Query 795 AATGTTCCACAATATGCCTCAGATTGTTTCAACTGTCTCTCTTCCTTCAGAGACATCAAA 854
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 728 AATGTTCCACACTATGCCTCAGATTGTTTCAACTGTTTCTCTTCCTTCAGAGACTTCAAA 787
Query 855 TTCTCCAGACACTACAAGCAGCCAAGTGACTACACCAGAGATCATTAGCTCGGGGAACAA 914
||||| ||| || |||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 788 TTCTCTAGAGACCACAAGCAGCCAAGTTACCGCACCAGAGATCATCAGCTCGGGGAACAA 847
Query 915 AGGCAAGGCCTTGATAGGGTGCAAGATGAACAGAACAGCTTCGATGCGTAGAGTTGAGAG 974
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 AAGCAAGGCCTTGATTGGGTGCAAGATGAACAGAACAGCTTCGATGCGTAGAGTTGAGAG 907
Query 975 CTTGGAACATCTGCAGAAACGTATTCGAAGCGTTGGGGATCAGTAGCTGTTAAAGAAGAA 1034
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 908 CTTGGAACATCTGCAGAAACGTATTCGAAGCGTTGGGGACCAGTAGCTGCTAAAGAAGAA 967
Query 1035 TCTTGATTTGTAACATTAATCTTAAGACATATGTTAAGACAAAATGTTGTATGtttttgt 1094
|||||||||||||||||| || |||| | ||||||||||||| || ||| |||||||||
Sbjct 968 TCTTGATTTGTAACATTA-TC--AAGAGAGATGTTAAGACAAA-TGCTGTGTGTTTTTGT 1023
Query 1095 aaagaattgttttttcagattatttaaatttttttttGTC 1134
|||||| |||||| ||||||||| || ||||||||||||
Sbjct 1024 AAAGAACTGTTTT--CAGATTATTGAACTTTTTTTTTGTC 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5