BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28823.1 Length=1707 Score E Sequences producing significant alignments: (Bits) Value Ahg344066 jgi|Araly1|344066|fgenesh1_pg.C_scaffold_4000408 418 7e-116 Ahg922091 jgi|Araly1|922091|scaffold_103372.1 379 3e-104 Ahg926656 jgi|Araly1|926656|scaffold_202217.1 346 3e-94 Ahg917661 jgi|Araly1|917661|Al_scaffold_0008_2412 316 3e-85 Ahg952246 jgi|Araly1|952246|scaffold_4800002.1 209 4e-53 Ahg911526 jgi|Araly1|911526|Al_scaffold_0001_1780 134 3e-30 > Ahg344066 jgi|Araly1|344066|fgenesh1_pg.C_scaffold_4000408 Length=576 Score = 418 bits (226), Expect = 7e-116 Identities = 304/341 (89%), Gaps = 7/341 (2%) Strand=Plus/Plus Query 1088 CATTAGATACGGCTATTGTTTCTAATGGTGCAGCGATATTGAAAGGGTTTCACAAAACTG 1147 |||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 5 CATTAGATACGGCTGTTGTTTCTAATGGTGCAGCGATATTGAACGGGTTTCACCAAACAG 64 Query 1148 TTGATGACACATCGGTTTTACCCCTTCAA---GTTATAGGTACTATCACCGACTTTCTCT 1204 ||| |||| |||||||| ||||| |||| ||| || | ||| |||||| ||||||| Sbjct 65 TTGTTGACTCATCGGTTAAACCCCATCAAGTTGTTGTAAATCCTAACACCGAGTTTCTCT 124 Query 1205 CCTCTTCAAACTCGAAAGAAGAAACTGTCATTGGCTTGGGATCAGTAGCAATTACTGATG 1264 ||||||||||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 125 CCTCTTCAAACTCAAAAGAAGAAGCTGTCTTTGGCTTGAGATCATTAGCAATTACTGATG 184 Query 1265 CAAGTAAAGATGTGGTTGTCGGTCCTCAGCTAGTTGAGAAGGAGGTCTTGCAAATTTCAG 1324 ||||||| | ||||||||||| || |||||||||||||||||| |||||||||||||||| Sbjct 185 CAAGTAAGGTTGTGGTTGTCGTTCATCAGCTAGTTGAGAAGGACGTCTTGCAAATTTCAG 244 Query 1325 ATTCAAATACTGCCATACTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAGGTCT 1384 |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 245 ATTCAACTACTGCCATGCTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAAGTCT 304 Query 1385 C-TACAAATA-ACACTACCTCTACTGCAGGGGTCAAATCTA 1423 | | |||||| | ||||||||| || ||||||||||||||| Sbjct 305 CCT-CAAATATA-ACTACCTCTGCTTCAGGGGTCAAATCTA 343 Score = 268 bits (145), Expect = 7e-71 Identities = 193/215 (90%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 1484 CATCGGATGTGGTTCTGCGCGAAGATTCAAACATGGTTGATTCTGACAAGTCTGAGGATT 1543 ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | Sbjct 344 CATCGGATGTGGTGCTGCCCGAAGATTCAGACATGGTTGATTCTGACAAGTCTGAGGACT 403 Query 1544 CAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACATCTCCAAGACA 1603 |||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||| Sbjct 404 CAGATGAGGATCTCATAATGAATCAAAAGTCACCATTTTCAGAAAAACATCTCCACGACA 463 Query 1604 GACCGTTGCAATT-TCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGAGGAAGAGGA 1662 ||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| | Sbjct 464 GACCGTTGCAATTGTC-GAACAAGGCAATAATTATTGGTCGTGGAGGAAGAGGAAGACGC 522 Query 1663 AGACGAGGTCGAGGAAATCGTGGTCGACGAG-GTG 1696 | | ||||||||||| ||||||||||| ||| Sbjct 523 GGTC----TCGAGGAAATCATGGTCGACGAGTGTG 553 > Ahg922091 jgi|Araly1|922091|scaffold_103372.1 Length=383 Score = 379 bits (205), Expect = 3e-104 Identities = 303/350 (87%), Gaps = 7/350 (2%) Strand=Plus/Plus Query 1356 GAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCTCTACTGCAGGGGT 1415 ||| ||||||||||||||||||||||||| | ||| || ||||||||| || ||||||| Sbjct 14 GAATGTGATGGCTACTCCCGCAAAGGTCTTTTCAATTATCACTACCTCGGCTTCAGGGGT 73 Query 1416 CAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGCT 1475 | | ||||||||| | | |||||| |||||||| ||||| |||||||||| ||| ||||| Sbjct 74 CCATTCTAGTACT-A-A-TTCTTTTCGCAAAGCCTCTAGCTCAAATAAATATGCAGTGCT 130 Query 1476 GGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCA-AACATGGTTGATTCTGACAAG 1533 ||||||||||||||||||||| |||| | || |||||| || | | || |||| | | Sbjct 131 GGATTTAGCATCGGATGTGGTACTGC-CTGATGATTCAGAAGA-AGATGTTTCTTCCGGG 188 Query 1534 TCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACAT 1593 || || ||||| |||||||||||||| ||||||| |||||| ||||||||| ||||||| Sbjct 189 TCGGATGATTCGGATGAGGATCTCATTTTGAATCTCAAGTCACCATTTTCAGAAAAACAT 248 Query 1594 CTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGA 1653 ||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||||||| Sbjct 249 CTCCAAGACAGACCGTTGCAATTGCCGATCAAGGCAATTAATATTGGTCGTGGAGGAAGA 308 Query 1654 GGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGTTTGG 1703 ||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 309 GGAAGGGGAAGACGCGGTCGAGGGAATCGTGGTCGACGAGGTGGGTTTGG 358 > Ahg926656 jgi|Araly1|926656|scaffold_202217.1 Length=1059 Score = 346 bits (187), Expect = 3e-94 Identities = 307/364 (84%), Gaps = 11/364 (3%) Strand=Plus/Plus Query 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402 ||||||| | || ||| ||||||||||||||||||||||| | | ||| || |||||||| Sbjct 678 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 736 Query 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462 | || ||| ||| |||||||| || | | |||||| |||||||||||||||||||||| Sbjct 737 CGGCTTCAGTTGTCCAATCTAGTGCT-A-A-TTCTTTTCGCAAAGCTTCTAGTTCAAATA 793 Query 1463 AATTTGCGGTGCTGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATG-G- 1519 ||||||| ||||| |||||||||||||||||||| |||| | || |||||| | | | | Sbjct 794 AATTTGCAGTGCTCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-AGGAGA 851 Query 1520 TTGATTCTGACAAGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACAT 1579 || |||| | ||| || |||||||||||||||||||| ||||||| |||||| ||| Sbjct 852 TTT-TTCTTCCGGGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCAT 910 Query 1580 TTTCAGGAAAACATCTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTG 1639 |||||| |||| |||| || ||||||||||||||||| |||| || |||||||||||| | Sbjct 911 TTTCAGAAAAATATCTACATGACAGACCGTTGCAATTGCCGATCATGGCAATAAATATGG 970 Query 1640 GTCATGGAGGAAGAGGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGT 1699 ||| ||||||||||||| | |||||||| |||||||| ||||| |||||||||||||||| Sbjct 971 GTCGTGGAGGAAGAGGAGGGGGAAGACGCGGTCGAGGGAATCGGGGTCGACGAGGTGGGT 1030 Query 1700 TTGG 1703 |||| Sbjct 1031 TTGG 1034 > Ahg917661 jgi|Araly1|917661|Al_scaffold_0008_2412 Length=642 Score = 316 bits (171), Expect = 3e-85 Identities = 298/358 (83%), Gaps = 13/358 (4%) Strand=Plus/Plus Query 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402 ||||||| | || ||| ||||||||||||||||||||||| | | ||| || |||||||| Sbjct 279 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 337 Query 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462 | || ||| ||| |||||||| || | | |||||| |||||||||||||||||||||| Sbjct 338 CGGCTTCAGTTGTCCAATCTAGTGCT-A-A-TTCTTTTCGCAAAGCTTCTAGTTCAAATA 394 Query 1463 AATTTGCGGTGCTGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATG-G- 1519 ||||||| ||||| |||||||||||||||||||| |||| | || |||||| | | | | Sbjct 395 AATTTGCAGTGCTCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-AGGAGA 452 Query 1520 TTGATTCTGACAAGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACAT 1579 || |||| | ||| || |||||||||||||||||||| ||||||| |||||| ||| Sbjct 453 TTT-TTCTTCCGGGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCAT 511 Query 1580 TTTCAGGAAAACATCTCCAA-GACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATT 1638 |||||| |||| |||| | | ||||||||||||||| |||| ||||||||||||||| Sbjct 512 TTTCAGAAAAATATCTATATTG-CAGACCGTTGCAATTCCCGATCAAGGCAATAAATATG 570 Query 1639 GGTCATGGAGGAAGAGGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTG 1696 |||| ||||||||||||| | |||||| | |||||||| ||||| ||||||||||||| Sbjct 571 GGTCGTGGAGGAAGAGGAGGGGGAAGATGCGGTCGAGGGAATCGGGGTCGACGAGGTG 628 > Ahg952246 jgi|Araly1|952246|scaffold_4800002.1 Length=238 Score = 209 bits (113), Expect = 4e-53 Identities = 195/233 (84%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 1356 GAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAA-TAACACTACCTCTACTGCAGGGG 1414 ||| ||||||||||||||||||||||| | | |||| || ||||||||| || ||| || Sbjct 14 GAATGTGATGGCTACTCCCGCAAAGGT-TTTTCAAATTATCACTACCTCGGCTTCAGTGG 72 Query 1415 TCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGC 1474 || |||||||| ||||||| | ||| ||||||||||||||||||||||||||||| |||| Sbjct 73 TCCAATCTAGTGCTAATAC-T-TTT-CGCAAAGCTTCTAGTTCAAATAAATTTGCAGTGC 129 Query 1475 TGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATGGTTGATT--CTGACA 1531 | |||||||||||||||||||| |||| | || |||||| | | || |||| || | Sbjct 130 TCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-A-GGA-GATTTTCTTCCG 185 Query 1532 AGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCA 1584 ||| || |||||||||||||||||||| ||||||| |||||| |||||||| Sbjct 186 GGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCATTTTCA 238 > Ahg911526 jgi|Araly1|911526|Al_scaffold_0001_1780 Length=741 Score = 134 bits (72), Expect = 3e-30 Identities = 119/141 (84%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402 ||||||| | || ||| ||||||||||||||||||||||| | | ||| || |||||||| Sbjct 606 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 664 Query 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462 | || ||| ||| |||||||| ||||| || |||| ||||||||||||||||||||| Sbjct 665 CGGCTTCAGTTGTCCAATCTAGTGCTAAT--TT-TTTC-GCAAAGCTTCTAGTTCAAATA 720 Query 1463 AATTTGCGGTGCTGGATTTAG 1483 ||||||| ||||| ||||||| Sbjct 721 AATTTGCAGTGCTCGATTTAG 741 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64029701845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5