BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28840.1 Length=1612 Score E Sequences producing significant alignments: (Bits) Value Ahg489666 jgi|Araly1|489666|fgenesh2_kg.6__2800__AT5G28840.1 1853 0.0 > Ahg489666 jgi|Araly1|489666|fgenesh2_kg.6__2800__AT5G28840.1 Length=1541 Score = 1853 bits (1003), Expect = 0.0 Identities = 1139/1207 (94%), Gaps = 0/1207 (0%) Strand=Plus/Plus Query 120 ctctgactcttctctgcattatctcttcgatctctccaactctccAAAACCTTCCTCAGA 179 ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 85 CTCTGACCCTTCTCTGCATTATCTCTTCGATCTCTCCAACTCTCGAAAACCTTTCTCAGA 144 Query 180 ATGGGAACTACCAATGGAACAGACTATGGAGCATACACATACAAGGAGCTAGAAAGAGAG 239 ||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| Sbjct 145 ATGGGAACTACCAATGGAAGTGATTATGGTGCTTACACATACAAGGAGCTAGAAAGAGAG 204 Query 240 CAATATTGGCCATCTGAGAATCTCAAGATATCAATAACAGGAGCTGGAGGTTTCATTGCA 299 | ||||||||||||||||| ||||||||||| || || || ||||||||||||||||| Sbjct 205 CCTTATTGGCCATCTGAGAAGCTCAAGATATCGATTACCGGCGCTGGAGGTTTCATTGCG 264 Query 300 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAA 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAG 324 Query 360 AAGAATGAACACATGACTGAAGACATGTTCTGTGATGAGTTCCATCTTGTTGATCTTAGG 419 |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 325 AAGAATGAGCATATGACTGAAGACATGTTCTGTGATGAATTCCATCTTGTTGATCTTAGG 384 Query 420 GTTATGGAGAATTGTCTCAAAGTTACTGAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 479 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 385 GTTATGGAGAATTGTCTCAAGGTTACTAAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 444 Query 480 GATATGGGTGGTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACT 539 |||||||||||||||||||| || ||| ||| || || ||||| |||||||| |||||| Sbjct 445 GATATGGGTGGTATGGGTTTCATTCAGTCTAACCATTCGGTGATCATGTATAACAATACT 504 Query 540 ATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGGTTCTTTTAT 599 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 505 ATGATTAGTTTCAATATGATCGAGGCGGCTAGGATCAATGGGATTAAGAGGTTCTTCTAT 564 Query 600 GCTTCGAGTGCTTGTATCTATCCAGAGTTTAAGCAGTTGGAGACTACTAATGTGAGCTTG 659 ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||| || Sbjct 565 GCTTCTAGTGCTTGTATTTACCCGGAGTTCAAGCAGTTGGAGACTACTAATGTGAGCCTG 624 Query 660 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAGCTTGCT 719 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 625 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAACTTGCA 684 Query 720 ACGGAGGAGTTGTGTAAGCATTACAACAAAGATTTTGGTATTGAGTGTCGAATTGGAAGG 779 |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 685 ACGGAGGAGTTGTGCAAGCATTACAACAAAGATTTTGGAATTGAGTGCCGCATTGGAAGG 744 Query 780 TTCCATAACATTTATGGTCCTTTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 839 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 745 TTCCATAACATTTATGGTCCATTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 804 Query 840 GCTTTCTGTAGGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTT 899 ||||||||||| ||||||| || ||||| ||||||||||||||||||||||| ||||| Sbjct 805 GCTTTCTGTAGAAAGGCTCTCACCTCCACAGATAGGTTTGAGATGTGGGGAGACGGGCTA 864 Query 900 CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGGTTGACAAAA 959 || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 865 CAAACCCGTTCTTTTACCTTCATCGATGAGTGCGTTGAAGGTGTACTCAGGTTGACAAAA 924 Query 960 TCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATGGTGAGCATGAATGAGATG 1019 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 925 TCTGATTTCCGTGAGCCGGTGAACATTGGAAGCGATGAGATGGTGAGCATGAATGAGATG 984 Query 1020 GCTGAGATGGTTCTCAGCTTTGAGGAAAAGAAGCTTCCAATTCACCACATTCCTGGCCCG 1079 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 985 GCTGAGATGGTTCTCAGCTTTGAGGAGAAGAAGCTTCCAATTCACCACATTCCAGGCCCA 1044 Query 1080 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1104 Query 1140 CCTAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1199 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1105 CCAAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1164 Query 1200 GAGAAAGAGAAAGCAAAGGGAAGCGATGTGTCGCTTTACGGGTCATCAAAGGTGGTTGGA 1259 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1165 GAGAAAGAGAAAGCAAAAGGAAGCGATGTGTCCCTTTACGGGTCATCAAAGGTGGTTGGA 1224 Query 1260 ACTCAAGCACCGGTTCAGCTAGGCTCACTCCGCGCGGCTGATGGAAAAGAGTGAAGTTCA 1319 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1225 ACTCAAGCGCCGGTTCAGCTAGGCTCACTCCGCGCAGCTGATGGAAAAGAGTGAATTTCA 1284 Query 1320 CCAAAGT 1326 ||||||| Sbjct 1285 CCAAAGT 1291 Score = 311 bits (168), Expect = 1e-83 Identities = 234/263 (89%), Gaps = 15/263 (6%) Strand=Plus/Plus Query 1354 AAGTTCAGCAAAATGTTTAGATATATTTTTAGGTAGCTTCCTATTAAAAAAGCAATAATA 1413 |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| Sbjct 1288 AAGTTCAGCAAAATGTTTAGATATATGTTTAGGTAGCTTCCTATT-AAAAAGCTATAATA 1346 Query 1414 AGTGTTTTGGATTTTGGTTCCTTCTATTCTGCTAATCCTTGTTTATGTTTAGTTGAAAAA 1473 ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| |||| Sbjct 1347 AGTGTTTTGGATTTTGGTTCCTTCTCTTCTGCTAATTCTTGTTTATGTTTACTTGGAAAA 1406 Query 1474 GTTTGCTTGCATTGTTAAGTCTGTTAT-C-ATAT-T-ATTGTGGTCCTTTCATTCACAGT 1529 |||||| ||||||||||| |||| | || | | ||||||||||||||| || || Sbjct 1407 GTTTGC----ATTGTTAAGTCAATTATACGATGTGTTATTGTGGTCCTTTCA--CA--GT 1458 Query 1530 ATGTATGTTTATCATCATAGTCAAGTTGATGTCGTGGTCCTCTCACGGACCAGTA-C-AA 1587 |||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| | || Sbjct 1459 ATGTATGTTTATTGTCATCGTCAACTTGATGTTGTGGTCCTCTCACGGACCAGTAACTAA 1518 Query 1588 GTAAGTGGCTTGTGTTTTTTCTT 1610 ||||||||||||||||||||||| Sbjct 1519 GTAAGTGGCTTGTGTTTTTTCTT 1541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60411128570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5