BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G32440.3
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493566 jgi|Araly1|493566|fgenesh2_kg.7__2999__AT5G32440.1 1483 0.0
> Ahg493566 jgi|Araly1|493566|fgenesh2_kg.7__2999__AT5G32440.1
Length=1033
Score = 1483 bits (803), Expect = 0.0
Identities = 933/992 (94%), Gaps = 23/992 (2%)
Strand=Plus/Plus
Query 44 TGCGAACATCTTTAAGATCCGATAAAAGACTTGTTTGAGAGATCTCAAGGAAGAAGAAGA 103
|||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 27 TGCGAACATCTTTAAGATCCGATAAAAGTCTTGTTCGAGAGATCTGAAGGAAGAAGAAGA 86
Query 104 AGGGGGGAAGCAGATAACATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTCGAGGAC 163
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 87 A-GGGGGAAGCAGATAACATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTTGAGGAC 145
Query 164 TTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGcttttcttcatcttcttcg 223
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 146 TTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGCTTTTCTTCGTCTTCTCCG 205
Query 224 tctcgtttttctcctccgattcctccttcttcctcacttcttctcGATCACCTCGCCGCG 283
|||||||||||| ||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 206 GCTCGTTTTTCTCATCCGATTCCGCCTTCGTCTTCGCTTCTTCTCGATCACCTCGCCGCG 265
Query 284 ATTTTCCCCGATATGGATAAGCAGATTCTTGAGAGGGCAATCGAGGAATGTGGAGATGAC 343
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 266 ATTTTCCCCGATATGGATAAGAAGATTCTTGAGAGGGCAATCGAGGAATGTGGTGATGAT 325
Query 344 CTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCT 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCA 385
Query 404 GATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAACCAAATGTTGAACCTCAACAG 463
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 386 GATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAAGCAAATGTTGAACCTCAGCAG 445
Query 464 CAAGGTAGATCAGCCAAGGAGGAACCAAATGTCTTGAACTTGGATGGTACAGAGTGGGTT 523
||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 446 CAA-G--GATCAGCCAAGGAGGAAGCACATGTCTTGAACTTGGATGGTACAGAGTGGGTT 502
Query 524 GAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCT 562
Query 584 GCAAGAGCATTGGAAGCTTTGGAGAAGTCAATTAATGCACGTACTGGTACTGACGCAATG 643
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 563 GCAAGAGCATTGGAAGCTTTGGAGAAGTCAATCAATGCACGTACTGGTACTGAAGCAATG 622
Query 644 CAAAATCTCCAACAGGAAAACATGATGCTGAAGCAGCAATTAGAAGCTATTGTACAGGAA 703
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 623 CAAAATCTCCAACAGGAAAACATGATGCTGAAGCAACAATTAGAAGCCATTGTACAGGAA 682
Query 704 AACAGTTTACTGAAACGAGCGGTAGTGACACAGCAGAAGCGGCAAAGAGAATCGGAAGAC 763
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 683 AACAGTTTACTAAAACGAGCGGTAGTGACGCAGCAGAAGCGGCAGAGAGAATCAGAAGAC 742
Query 764 CAAAGTCAGGAATTGCAGCATCTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGA 823
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 743 CAAAGTCAGGAATTGCAGCATTTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGA 802
Query 824 ACTTTAGAGGTGAATAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGT 883
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ACTTTAGAGGTGAACAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGT 862
Query 884 TCCATCCCGGGGCGGTACCATCCAGACGTCTTCTAATACTTTGTGAGGCCCTCGTATCAT 943
||||||||||| ||||||||||||||||||||||||||||||||||| | || | |
Sbjct 863 TCCATCCCGGGCCGGTACCATCCAGACGTCTTCTAATACTTTGTGAG----T-GT-T--T 914
Query 944 TTTGTTTCCAGTGTATTTTTCTCTGTTGGTTTGTGACTATTTATATAT-AT-TCGGGGAA 1001
||| |||||||||||||||||||||||||||||| ||||| | || || ||
Sbjct 915 -------CCAATGTATTTTTCTCTGTTGGTTTGTGACTATT-ATATACGAAGTCTGG-AA 965
Query 1002 TCAAAACTGTGTTCTTttgttgttgttgttgt 1033
||||||||||||| ||||||||||||||||||
Sbjct 966 TCAAAACTGTGTTTTTTTGTTGTTGTTGTTGT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5