BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G32450.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493567 jgi|Araly1|493567|fgenesh2_kg.7__3000__AT5G32450.1 1483 0.0
> Ahg493567 jgi|Araly1|493567|fgenesh2_kg.7__3000__AT5G32450.1
Length=958
Score = 1483 bits (803), Expect = 0.0
Identities = 910/961 (95%), Gaps = 10/961 (1%)
Strand=Plus/Plus
Query 11 GACGGCTGGGCTGTTCAAAATCATTTCTTCTCTCTTCCGTCAA-AATTATTATTCTCTCG 69
|||| ||||||||||||||||| ||||||||||||| ||||| || ||||||||||||
Sbjct 2 GACGTCTGGGCTGTTCAAAATC-TTTCTTCTCTCTT-GGTCAAGAA--ATTATTCTCTCG 57
Query 70 CAGTCGTC-A-AG--AGCTT-CTTCTACAACAATGCAGACGACGAGAAGTGTTCAAGTAA 124
|||||||| | || ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 58 CAGTCGTCAAGAGCTAGCTTCCTTCTACAACAATGCAGACAACGAGAAGTGTTCAAGTAA 117
Query 125 ATAATGTCTCAGATCTAGCCACAGAGAGAGAGATTCACGAGTTTTTCTCCTTCTCAGGCG 184
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 118 ATAATGTCTCAGATCTAGCCACGGAGAGGGAGATTCACGAGTTTTTCTCCTTCTCAGGCG 177
Query 185 ACATAGAACACATTGAAATCCAAAAAGAATTTGGACAGTCTCGAATCGCATTTGTTACAT 244
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 178 ACATAGAACACATTGAAATCCAAAAAGAAGTTGGCCAGTCTCGAATCGCATTTGTTACAT 237
Query 245 TTACTGATCCCAAAGCCCTCGAAATTGCCTTGTTATTATCGGGTGCGACGATTGTGGACC 304
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTACTGACCCCAAAGCCCTTGAAATTGCCTTGTTATTATCGGGTGCGACGATTGTGGACC 297
Query 305 AGATTGTTACAATAACACGAGCTGAAAACTATGTTCAGAGGCGTGAGACACAGGAAGTAA 364
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 AGATTGTTACAATAACTCGAGCTGAAAACTATGTTCAGAGGCGTGAGATGCAGGAAGTAA 357
Query 365 GAATGTTGGACAACGCGATGCCTCTTGGTCTTCAAGAGAGTACTACACAGACTAAAACGA 424
||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||| |
Sbjct 358 GAATGGTGGACAACGCGATGCCCCTTGGTCTTCCAGAGAGTACTACACAGACCAAAACTA 417
Query 425 ACATGGATGGTAATAGTAGAGCATACGTTAGCAAAGCACAAGATGTGGTGGCAACGGTTT 484
| |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 418 CCGCGGATGGCAATAGTAGAGCATATGTTAGCAAAGCACAAGATGTGGTGGCAACTGTTT 477
Query 485 TGGCAAAAGGGTCTGCTCTTGGACAAGATGCAGTGAATAAAGCCAAGGCTTTCGACGAAA 544
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 TGGCAAAAGGTTCTGCTCTTGGACAAGATGCAGTGAATAAAGCCAAGGCTTTCGACCAAA 537
Query 545 AGCACCAATTAAGAGCCAATGCTTCTGCTAAAGTTTCATCTTTTGACAAGCGAGTTGGTC 604
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 538 AGCATCAATTAAGAGCCAATGCTTCTGCCAAAGTTTCATCTTTTGACAAGCGAGTTGGGC 597
Query 605 TTACTGAGAAGTTATCTGTTGGTATTTCTGCTGTTAATGAGAAAGTTAAATCTGTTGATC 664
|||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 598 TTACTGAGAAGTTAACTGTTGGTATTTCTGCCGTTAACGAGAAAGTAAAATCTGTTGATC 657
Query 665 AAAAGCTTCAAGTCTCCGATAAAACTATGGCAGCAATATTTGCAGCCGAGAGGAAGTTAA 724
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 658 AAAAGCTTCAGGTCTCCGATAAAACCATGGCAGCAATATTTGCAGCCGAGAAGAAATTAA 717
Query 725 ACGACACGGGTTCAGCTGTCAAATCAAGCAGGTACGTGACTGCTGGAGCTGCTTGGTTTA 784
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACGACACTGGTTCAGCTGTCAAATCAAGCAGGTACGTGACTGCTGGAGCTGCTTGGTTTA 777
Query 785 GTGGCGCTTTTAGTAAAGTGGCGAGAGTAGGTCAGGTTGCTGGCTCAAAAACCAAAGAGA 844
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGGTGCTTTTAGTAAAGTGGCGAGAGTAGGTCAGGTTGCTGGCTCAAAAACCAAAGAGA 837
Query 845 AGTTCAATCTAGCCGTCTCAAATATGAGTTCCAAGGATACACCGATTGCTGTATAATAAA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGTTCAATCTAGCCGTCTCAAATATGAGTTCCAAGGATACACCGATTGCTGTATAATAAA 897
Query 905 GAGCTTGGAATCAAGTAAGCGTTGAAGTCAGGATCAACGAAAGTTGCTATACTAGCCTTG 964
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 898 GAGCTTGGAATCTAGTAAGCGTTGAAGTCAGGATCAACGAAAGTTGCTATGCTGGCCTTG 957
Query 965 T 965
|
Sbjct 958 T 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5