BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G32470.1
Length=2317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947127 jgi|Araly1|947127|scaffold_703356.1 3101 0.0
> Ahg947127 jgi|Araly1|947127|scaffold_703356.1
Length=1899
Score = 3101 bits (1679), Expect = 0.0
Identities = 1825/1896 (96%), Gaps = 7/1896 (0%)
Strand=Plus/Plus
Query 9 CTCTCTTTTGCCTTCTCTCTCATTTTATGCGCTTCCTCTTCCCCACGCGCCTCATCAACA 68
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTCTCTTTT-CCTTCTCTCTCGTTTTATGCGCTTCCTCTTCCCCACGCGCCTCATCAATA 59
Query 69 ACTCATCTCTCGGTCTCCTCCGATCTCCACACACCACCGCGCCGATCCGTTCTCTCTGGT 128
|||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 60 ACTCATCTCTCGGTCTTCTCCGATCCCCACGCACCGCCGCGCCGATCCGTTCTCTCTGGT 119
Query 129 TTCGCACCAAGTCTCCGGTCTTCCGATCGGCGACTACTCCAATAATGACGGCGGTCGCTT 188
|||||| ||||||||||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct 120 TTCGCAGCAAGTCTCCGGTCTTCCGATCGGCGACAAGTCCAATAATGGCGGCGGCCGCCT 179
Query 189 TCTCTTCATCGTTGTCGATTCC-CCCTACCTCGGAAGAAGCACTTCCAGGGAAGCTATGG 247
|||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||
Sbjct 180 TCTCTTCATCGTTGTCGATTCCTCCC-AACTCGGAAGAAGCACTTCCTGGGAAGCTATGG 238
Query 248 ATCAAGTTTAACAGAGAGTGTCTCTTCTCTATCTATAGCCCCTTCGCCGTCTGTTTAGCC 307
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 239 ATCAAGTTTAACAGAGAGTGCCTCTTCTCTATCTACAGCCCCTTCGCCGTCTGCTTAGCC 298
Query 308 GCCGGAAATCTCAAGATCGACACATTTCGTCAGTATATTGCACAGGATGTTCATTTCCTT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCCGGAAATCTCAAGATCGACACATTTCGTCAGTATATTGCACAGGATGTTCATTTCCTT 358
Query 368 AAGGCCTTTGCTCACGCGTATGAACTGGCCGCAGATTGTGCTGATGACGATGATGATAAA 427
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 359 AAGGCGTTTGCTCACGCGTATGAACTGGCCGCAGAGTGTGCTGATGATGATGATGATAAA 418
Query 428 TTGGCAATTTCTGATTTGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTT 487
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 TTGGCAATTTCTGACTTGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACAACTCATTT 478
Query 488 GTACAGGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTGAGA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTACAGGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTGAGA 538
Query 548 TACACTGAGTTCTTGTTAGCTACAGCATCCGGAAAAGTAGAAGGATGCAAAGCTCCCGGC 607
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 539 TACACTGAGTTCTTGTTAGCTACAGCTTCCGGAAAAGTAGAAGGATGCAAAGCTCCCGGC 598
Query 608 ATGCTTGATACTCCATTTGAAAAAACAAAAGTTGCTGCCTACACGCTTGGTGCTGTGACA 667
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 599 ATGCTTGATACTCCATTTGAAAAAACAAAAGTTGCTGCTTATACGCTTGGTGCTGTGACA 658
Query 668 CCTTGCATGCGGTTGTATGCCTTTCTCGGTAAGGAGTTTGGATCACTTCTTGATCTGAGT 727
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 CCTTGCATGAGGTTGTATGCCTTTCTCGGTAAGGAGTTTGGAGCACTTCTTGATCTGAGT 718
Query 728 GATGTGAACCATCCCTACAAGAAATGGATCGATAATTATTCTAGTGATGCTTTCCAGGCA 787
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AATGTGAACCATCCCTACAAGAAATGGATCGATAATTATTCTAGTGATGCTTTCCAGGCA 778
Query 788 TCAGCCAAGCAAACTGAAGACTTGCTTGAGAAGCTTAGTGTCTCTATGACTGGTGAAGAA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCAGCCAAGCAAACTGAAGACTTGCTTGAGAAGCTTAGTGTCTCTATGACTGGTGAAGAA 838
Query 848 TTGGACATAATTGAAAAATTGTATCAACAGGCTATGAAACTTGAAGTAGAGTTCTTCCAT 907
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 TTGGACATAATTGAAAAATTGTATCAACAGGCTATGAAACTTGAAGTAGAATTCTTCCAT 898
Query 908 GCCCAGCCACTTGCC-CAGCCTACCATAGTTCCACTGCTCAAGAACCACTCAAAAGATGA 966
||||| || || || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 GCCCAACCGCT-GCTTCAGCCTACCATAGTTCCACTGGTCAAGAACCACTCAAAAGATGA 957
Query 967 TCTGGTGATCTTTTCTGATTTTGATCTGACTTGCACCGTTGTGGATTCTTCTGCTATTTT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCTGGTGATCTTTTCTGATTTTGATCTGACTTGCACCGTTGTGGATTCTTCTGCTATTTT 1017
Query 1027 AGCGGAAATAGCAATTGTAACTGCCCCAAAAGATGAACAAAGTCGATCTGGACAACAAAT 1086
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1018 AGCGGAAATAGCAATTGTAACTGCCCCAAAAGATGAACAGAGTCGATCTGGACAACAAAT 1077
Query 1087 TCATCGGATGCTCTCATCTGACCTTAAGAACACCTGGAATCTACTTTCTAAACAATACAC 1146
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCAGCGGATGCTCTCATCTGACCTTAAGAACACCTGGAATCTACTTTCTAAACAATACAC 1137
Query 1147 AGAGCATTATGAAGAATGCATAGAGAGTATTCTGAATAAA-AAGAAAGCGGACAAGTTTG 1205
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1138 AGAGCATTATGAAGAATGCATAGAGAATATTCTGAATAAAGAA-AAAGCGGACAAGTTTG 1196
Query 1206 ACTATGAAGGTTTATGTAAAGCACTAGAGCAGCTTTCAGATTTTGAGAAAGAGGCAAATA 1265
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1197 ACTATGAGGGTTTATGTAAAGCACTAGAGCAGCTTTCAGATTTTGAGAAAGAGGCAAACA 1256
Query 1266 ATCGAGTGATTGAGTCTGGTGTACTCAAAGGCCTGAATCTTGAAGACATTAAGCGCGCTG 1325
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1257 ATCGAGTGATCGAGTCTGGTGTACTCAAGGGCCTGAATCTCGAAGACATTAAGCGCGCTG 1316
Query 1326 GGGAAAGGTTAATCCTTCAAGATGGATGCATCAATGTCTTCCAGAAAATTTTAAAGACTG 1385
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1317 GGGAAAGGTTAATTCTTCAAGATGGCTGCATCAATGTCTTCCAGAAAATTTTAAAAACTG 1376
Query 1386 AGAATCTGAATGCAGAACTTCATGTGCTTTCCTATTGTTGGTGTGGTGACCTCATCAGGG 1445
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1377 AGAATCTGAATGCAGAACTTCACGTGCTTTCCTATTGTTGGTGTGGCGACCTCATCAGGG 1436
Query 1446 CAGCCTTTTCTGCAGGCGGAGTAGATGCAGTGGAAGTACATGCAAATGAATTCACATTTG 1505
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1437 CAGCCTTTTGTGCAGGCGGAGTAGATGCAGTGAAAGTACATGCAAATGAATTCACATTTG 1496
Query 1506 AGGAATCCATCTCGACTGGTGAGATCGAAAGAAAGGTGGAATCCCCAATTAACAAAGCTC 1565
|||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1497 AGGAATTCATCTCGACAGGTGAGATTGAAAGAAAGGTGGAATCCCCGATTAACAAAGCTC 1556
Query 1566 AACAGTTCAAAAGTATCCTACAAAACAGAAAGAATGAGAACAATAAGAAAAGTTTCTTGA 1625
| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1557 AGCAGTTCAAAAGTATCCTACAAAACAGAAAGGATGAGAACACGAAGAAAAGTTTCTTGA 1616
Query 1626 GTGTGTATATTGGAGATTCGGTAGGTGACTTGCTGTGTCTCCTCGAAGCAGATATAGGAA 1685
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1617 GTGTGTATATTGGAGATTCGGTAGGTGACTTGTTGTGTCTCCTCGAAGCAGATATAGGAA 1676
Query 1686 TAGTGGTTAGCTCTAGCTCGAGTCTCAGGAGAGTTGGAAGCCATTTTGGGGTCTCATTTG 1745
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1677 TAGTGGTTAGCTCTAGCTCGAGTCTCAGGAGAGTTGGAAGCCATTTTGGTGTCTCATTTG 1736
Query 1746 TGCCTTTGTTTTCTGGAATCGTCCAGAAACAGAAACAACACACTGAAGAATCATCATCAT 1805
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1737 TGCCTTTGTTTTCTGGAATCGTCCAGAAACAGAAACAACACACTGAAGAAGAATCATCAT 1796
Query 1806 CAGCATGGAAAGGACTCTCTGGCACACTTTACACAGTTTCAAGCTGGGCCGAAATTCATT 1865
|| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1797 CAACCTGGAAAGGACTCTCTGGCACACTTTACACAGTTTCAAGCTGGGCTGAAATTCATT 1856
Query 1866 CATTCGCTCTTGGATGGGAGTAAATCGGTAGAACAA 1901
|||||||||||||||||||||||| |||||||||||
Sbjct 1857 CATTCGCTCTTGGATGGGAGTAAACCGGTAGAACAA 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87264751295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5