BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G33406.1 Length=1601 Score E Sequences producing significant alignments: (Bits) Value Ahg924675 jgi|Araly1|924675|scaffold_200236.1 496 3e-139 Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1 457 1e-127 > Ahg924675 jgi|Araly1|924675|scaffold_200236.1 Length=482 Score = 496 bits (268), Expect = 3e-139 Identities = 408/472 (86%), Gaps = 24/472 (5%) Strand=Plus/Plus Query 787 TTGACTCAATGTCGA-TTGAACGACATGATATTTGTGAAATACAATCGCGCTCTGCAACG 845 |||| ||||| || | |||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1 TTGAATCAATCTC-AGTTGAACGACATGGTATTTGTGAAATACAATCGCGCTCTACAACG 59 Query 846 TCGATACAAGA-GAAATGACACCTTCGATCCTATTTTGTTGAATGAAATTGATCAATGCA 904 ||||||||||| |||| |||||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 60 TCGATACAAGAGGAAA-GACACCGTCGATCCTATTGTGTTGGATGAAATTGATGAATGCA 118 Query 905 ATGAGTGGCTGACTGGGAGAATGGAGGAGAACTCATCTGATACTGAAAATGATGATCTTG 964 |||||||||||||||||| ||| | | | |||||||| || || |||||||||| Sbjct 119 ATGAGTGGCTGACTGGGACAAT----G-G-A---ATCTGATAATG--AA-GATGATCTTG 166 Query 965 TGTTTGAAAATGATGACTTGACATGGGCTGAAGTTGGCGAGGCCGCAGGAGCTAATGATC 1024 |||||||| ||||| ||||||||||| || |||||| ||||||| ||| |||||||||| Sbjct 167 TGTTTGAAGATGATAACTTGACATGGAATGTAGTTGGTGAGGCCGTAGGTGCTAATGATC 226 Query 1025 CTTATTATGCAACTAGATCAACAGCTGCTTCAAGTAGATTTGAGAAAGGAAAAGGTATTG 1084 ||||||||||||||||||| | ||||||||||||||| |||| ||||||||||| ||| Sbjct 227 CTTATTATGCAACTAGATCGGCTGCTGCTTCAAGTAGAATTGAAAAAGGAAAAGGCGTTG 286 Query 1085 CTAGTGATTCTGGTGGACATGGTAATTC-AAGAGCATCTCGCAAGACACC-TAATAGTTC 1142 ||| ||||||||||||||||||| ||| || ||||||||||| | || | | || ||| Sbjct 287 CTACTGATTCTGGTGGACATGGTCGTTCCAA-AGCATCTCGCAGGCCATCATC-TACTTC 344 Query 1143 TCGTCCTATGACTTTGGTTGATGAGGATGAAGAGATGGAAGATGATTTTC-TTGGAGCAG 1201 | |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||| Sbjct 345 TAGTCCTATGACTTTGGTTGATGATGATGAAGAGATGGAAGAGGATTT-CATTGGACCAG 403 Query 1202 AGTATGAGGACACTCTTTTGGACAAGGATGATTATGAGT-TCGATGATTCTG 1252 ||| |||||| || ||||||||||||||||||||||||| | |||||||||| Sbjct 404 AGTTTGAGGATACGCTTTTGGACAAGGATGATTATGAGTAT-GATGATTCTG 454 > Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1 Length=1519 Score = 457 bits (247), Expect = 1e-127 Identities = 325/361 (90%), Gaps = 11/361 (3%) Strand=Plus/Plus Query 1246 GATTCTGCTGGATATAACCAAATTCCAAGTATTCCTGCTCCTCTTGGCTTCGGGCCACCT 1305 ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 1077 GATTC-ACTGGATATAACCAAATTCCAAGCACTCCTGCTCCTCTTGGCTTCGGGCCACCT 1135 Query 1306 CCAAGCTCTACCATGAGTCCCTATGGCA-CTACAATGGATGCAATGTATATGCATTTGCC 1364 |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||| Sbjct 1136 CCAAGCTCTATCATGAGTCCCTATGGCAGC-ACAATGGATGCAATGTATATGCATTGGCC 1194 Query 1365 TAATGCAGCCATGATGTATGCTCATCCCTATGAGCAGTTGAGAAATGGCCCTCTTCAGGC 1424 |||| |||| ||||||||||||||||| ||||||||||| || |||||| |||||||||| Sbjct 1195 TAATACAGCTATGATGTATGCTCATCCGTATGAGCAGTTTAGGAATGGCTCTCTTCAGGC 1254 Query 1425 ACAGTTCGTTCAACAACCCTTGAGCTTCGACT--ACTGCAGAAACGCTAGGTGCTCGTCT 1482 |||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||| Sbjct 1255 ACAGTTCGTTCAACAACCCTTGAGCTTCGACTGTA-TGCAGAACCGCTAGGTGCTTGTCT 1313 Query 1483 CTTTGTCAATCTTCCTCTCTCTATACCttttttttttGTAGAACCTAGGAACTGTTGTAA 1542 | ||||||||||| ||||| | |||| |||| || ||||||| ||||| ||||||||| Sbjct 1314 CGTTGTCAATCTTTATCTCTGTTTACCAGTTTTCTT-GTAGAAC-TAGGAGCTGTTGTAA 1371 Query 1543 TGGAA-TTTTGGGGCTT-TAATGTCAAAATTCAGGATGAAGATACCTTTTGTTCCTTTTA 1600 ||||| |||||| | || |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1372 TGGAAATTTTGGAG-TTGTAATGTCAAATTTCAGAATGAAGATACCTTTTGTTCCTTTTA 1430 Query 1601 C 1601 | Sbjct 1431 C 1431 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59992135875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5