BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G34940.2
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493582 jgi|Araly1|493582|fgenesh2_kg.7__3015__AT5G34940.2 2682 0.0
> Ahg493582 jgi|Araly1|493582|fgenesh2_kg.7__3015__AT5G34940.2
Length=1796
Score = 2682 bits (1452), Expect = 0.0
Identities = 1687/1801 (94%), Gaps = 14/1801 (1%)
Strand=Plus/Plus
Query 23 ttttttGGAATGTGTGTCTCTCTTCCATTTCCATATATTATATAAACACC--A---AATG 77
||||| ||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 1 TTTTTCGGAATGTGTGTCTGTCTTCCATTTCCATATATTATATAAACACCAAACGGAACG 60
Query 78 AGATCTCATTTTTCTAATAAATAAGAAGAAAGAAGAGAGAAACAATGGCTTATCGTCAAA 137
|||||||| | |||| |||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 61 AGATCTCA-TATTCTTATAAATAAAAAGAAAGAAGAGAGAAATAATGGGTTGTCGTCAAA 119
Query 138 TTTTGG-CCATAGTTTTGTTTCTTTGTGTGTTTCAATTCTTGGACTGCACTGTTAGCTCC 196
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 -TTTGGATCATAGTTTTGTTTCTTTGTGTGTTTCAATTCTTGGACTGCACCGTTAGCTCC 178
Query 197 GCCGTAGAAGAGAATGGGACTGTGTTTGTGTACGGAAGAGCCGCCGTTGGAACAATAGAT 256
||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 179 GCCGTAGAAGAGACTGGGACGGTGTTTGTGTACGGAAGAGCGGCCGTGGGAACAATAGAC 238
Query 257 GAAGACTTCATTTGCGCCACCTTAGACTGGTGGCCACCGGAGAAATGTGACTACGGCAGT 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 GAAGACTTCATTTGCGCCACCTTAGACTGGTGGCCACCGGAGAAATGTGACTACGGCACT 298
Query 317 TGTAGTTGGGACCATGCTTCAATTCTCAATCTGGATTTGAACAACGTTATTCTTCAAAAT 376
|||||||||||||||||||| ||||| |||||||| ||||||||| ||| |||||||||
Sbjct 299 TGTAGTTGGGACCATGCTTCCATTCTTAATCTGGACTTGAACAACACTATCCTTCAAAAT 358
Query 377 GCAATCAAAGCATTTGCTCCGTTGAAAATAAGAATAGGAGGAACATTACAAGACATAGTG 436
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCAATCAAAGCATTTTCTCCATTGAAAATAAGAATAGGAGGAACATTACAAGACATAGTC 418
Query 437 ATATATGAGACACCAGATTC-GAAGCAACCATGTCTTCCTTTTACCAAAAACTCTTCAAT 495
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATATATGAGACACCAGA-TCAGAAGCAACCATGTCTTCCTTTTACCAAAAACTCTTCAAT 477
Query 496 TCTTTTTGGTTACACACAAGGATGTCTACCTATGCGTCGATGGGACGAGCTCAATGCCTT 555
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 TCTCTTTGGTTACACACAAGGATGTCTACCTATGCGTCGATGGGATGAGCTCAATGCCTT 537
Query 556 CTTTCGCAAAACCGGAACTAAAGTCATCTTCGGGCTGAATGCACTTTCTGGACGTTCCAT 615
|||||| ||||||||| ||| ||||||||| || ||||||||||| ||||| ||||||||
Sbjct 538 CTTTCGAAAAACCGGAGCTAGAGTCATCTTTGGACTGAATGCACTCTCTGGGCGTTCCAT 597
Query 616 AAAATCTAACGGTGAAGCCATAGGAGCCTGGAATTACACCAATGCTGAATCGTTCATCCG 675
|||| | ||||| |||||||||||||||||| | |||| |||||||||||| |||||||
Sbjct 598 AAAACCAAACGGCGAAGCCATAGGAGCCTGGGACTACAGCAATGCTGAATCATTCATCCA 657
Query 676 GTTTACAGCAGAGAACAATTACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGG 735
||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTTACAGCACAGAATAACCACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGG 717
Query 736 AAGTGGTGTTGGTGCACGAGTTGGTGCAAATCAATATGCTATAGACACCATAAATCTGCG 795
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 718 AAGTGGTGTTGGTGCACGAGTTGCAGCAAATCAGTATGCTATAGACACCATAAATCTACG 777
Query 796 AAACATTGTGAACCGGGTTTACAAGAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGG 855
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 AAACATCGTGAACCGGGTTTACAATAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGG 837
Query 856 TGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAGCAGAAAACTCTCTCAA 915
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 838 TGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAACAGAAGACTCTCTCAA 897
Query 916 TGCTACTACTCGACATATCTACGATCTCGGTCCAGGAGTCGATGAACATCTGATAGAAAA 975
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 898 TGCTACTACTCGGCATATCTACGATCTCGGTCCAGGAGTTGATGAACATCTGATAGAAAA 957
Query 976 GATTCTAAACCCTTCATATCTGGACCAAGAGGCAA-AAAGTTTTCGCAGTC-TCAAGAAC 1033
|||||| |||||||||||||||||| |||||||| || | |||||||| | |||||||
Sbjct 958 GATTCTTAACCCTTCATATCTGGACGGAGAGGCAATAACG-TTTCGCAG-CGTCAAGAAG 1015
Query 1034 ATAATCAAAAACTCCTCAACAAAGGCTGTGGCATGGGTTGGTGAGTCCGGTGGTGCCTAC 1093
| ||| ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 1016 ACAATAAAAAAATCCTCAACCAAGGCCGTGGCATGGGTTGGTGAATCTGGTGGTGCCTAC 1075
Query 1094 AACAGTGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAG 1153
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AACAGCGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAG 1135
Query 1154 CTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGA 1195
Query 1214 AACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGACTATTACAGTGCTCTG 1273
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1196 AACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGATTATTACAGTGCTCTG 1255
Query 1274 ATCTGGCGACAACTTATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAG 1333
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATCTGGCGACAACTCATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAG 1315
Query 1334 ATACGTTCGTACACCCATTGTGCAAGACAATCGAAAGGGATCACAGTTTTACTGATGAAC 1393
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1316 ATACGTTCATACACCCATTGTGCAAGACAATCAAAAGGGATTACAGTTTTACTGATGAAC 1375
Query 1394 CTTGACAATACTACAACGGTTGTAGCGAAAGTAGAGTTAAATAACAGTTTCAGTCTGAGA 1453
|||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1376 CTTGACAACACTACGACGGTTGTAGCGAAAGTAGAGTTAAATAAGACTTTCAGTCTAAGA 1435
Query 1454 CATACAAAGCACATGAAGTCTTATAAAAGAGCAAGTTCCCAACTTTTTGGGGGTCCTAAT 1513
|||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 1436 CATACAAAGCACATGAAGTCTTATAAAAGAGCAACTTCCCAACTTCCACAGGATCCTAAT 1495
Query 1514 GGAGTAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACCTACACAGTCAG 1573
|| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1496 GGGGAAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACTTACACAGTCAG 1555
Query 1574 ACTATGCTACTCAACGGAAATGCTCTTCAGGTTAATTCGATGGGTGATTTACCTCCTATA 1633
|||||||||||||| |||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 1556 ACTATGCTACTCAATGGAAATGCTCTTCAGGTTAATTTGACGGGTGACTTACCTCCTATA 1615
Query 1634 GAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTT 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTT 1675
Query 1694 GTGCATATGCGGAATGTTGTTGTACCTGCATGTGCTTAAGGTAGCTGCATATGGAACTTA 1753
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 GTGCATATGCGGAGTGTTGTTGTACCTGCATGTGCTTAAGGTAGCTGCATATGGAACTTA 1735
Query 1754 AGACAGTTCCTTCATTCAGTTATTTGATTAGAGAAAAATAAAGAAGCGTACCTTTCTTTC 1813
||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 1736 AGACAGTTCCTCCATTCAGTTATTTGATCAGAGAAAAAGAAAGAAGTGTACCTTTCTTTC 1795
Query 1814 A 1814
|
Sbjct 1796 A 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5