BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35170.1
Length=2143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493590 jgi|Araly1|493590|fgenesh2_kg.7__3023__AT5G35170.1 1509 0.0
> Ahg493590 jgi|Araly1|493590|fgenesh2_kg.7__3023__AT5G35170.1
Length=1990
Score = 1509 bits (817), Expect = 0.0
Identities = 864/887 (97%), Gaps = 2/887 (0%)
Strand=Plus/Plus
Query 993 ATAAAGCATCTCCTGTTCAGGATAAATGGAGAGGAATACCGACGAGATTGAATAACATTC 1052
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 931 ATAAAGCATCTCCTGTTCAGGACAAATGGAGAGGAATACCGACGAGATTGAATAACATTC 990
Query 1053 CACATTCGAGGGATATCAGGGCTTATTTTTATGAAGATGTGCTGCAAGCCACAATTAGAT 1112
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 991 CTCATTCGAGAGATATCAGGGCTTATTTTTATGAAGATGTGCTACAAGCCACAATTAGAT 1050
Query 1113 CTATCAAGGATGGTAACACCCGTCTTCGGGTGGACATTAATATCCCTGAGCTAAATCCGG 1172
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1051 CTATCAAGGATGGAAACACCCGTCTTCGGGTGGACATAAATATCCCTGAGCTTAATCCGG 1110
Query 1173 AAATGGATGTTTACCGGATAGGAACCTTGATGGAACTTGTTCAAGCTT-TAGCTTTATCA 1231
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1111 AAATGGATGTTTACCGGATAGGAACCTTGATGGAACTTGTTCGTG-TTCTAGCTTTATCA 1169
Query 1232 TTCGCTGACGATGGAAAAAGAGTGAAGGTTTGTGTTCAGGGATCAATGGGGGAAGGTGCA 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TTCGCTGACGATGGAAAAAGAGTGAAGGTTTGTGTTCAGGGATCAATGGGGGAAGGTGCA 1229
Query 1292 CTTGCTGGGATGCCATTGCAGTTGGCAGGCACTCGAAAGATTTTAGAATATATGGACTGG 1351
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CTCGCTGGGATGCCATTGCAGTTGGCAGGCACTCGAAAGATTTTAGAATATATGGACTGG 1289
Query 1352 GGTGATGATGAAACTTTGGGAACTTTCGTCAAGCTTGGTGCAATTGGTGGTAAAGAAGTT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 GGTGATGATGAAACTTTGGGAACTTTCGTCAAGCTTGGTGCAATTGGTGGTAAAGAAGTT 1349
Query 1412 GATGAAGAAGATGACATGTTCATCTTAGTGGCTCCACAAAATGCCGTTGGAAACTGTATT 1471
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1350 GATGAAGAAGACGACATGTTCATCTTAGTGGCTCCACAAAATGCTGTTGGAAACTGTATT 1409
Query 1472 ATAGATGATCTACAAGCGATGACTACTGCTGCTGGGAAAAGGCCAGTTGTACTTATCAAT 1531
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ATAGATGATCTTCAAGCGATGACTACTGCTGCTGGGAAAAGGCCAGTTGTACTTATCAAT 1469
Query 1532 CCTCGCCTCAAGGACTTGCCCGCTTCGAGTGGCATAATGCAAACAATGGGCAGGGAGCAA 1591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1470 CCTCGCCTCAAGGACTTGCCCGCTTCAAGTGGCATAATGCAAACAATGGGCAGGGAGCAA 1529
Query 1592 AGGCTGGAATATGCTTTGACGTTTGACAACTGCTATGTATTCCGGCTTCTCTATTATTTG 1651
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 AGGCTGGAATATGCCTTAACGTTTGACAACTGCTATGTATTCCGGCTTCTCTATTATTTG 1589
Query 1652 GGAACACAATACCCGATTATGGGCGCTCTAAGGATGTCTTATCCATACCGGTATGAGCTT 1711
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1590 GGAACACAATACCCGATTATGGGCGCTCTAAGGATGTCTTATCCTTACCGGTATGAGCTT 1649
Query 1712 TATAAGAGAGTGAACGAGGAAAATGGAAAGGAGAAATATGTCTTGCTAGCAACGTACGCT 1771
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1650 TATAAGAGAGTGAATGAGGAAAATGGAAAGGAGAAATATGTCTTGCTAGCAACGTACTCT 1709
Query 1772 GAAAGACCAACCCCTGAACAAATCGACGATGCCTTCTCTGGAAAATCGCGGGATCAAAGC 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 GAAAGACCAACCCCTGAACAAATCGACGATGCCTTCTCTGGAAAATCGCGGGATCAAAGC 1769
Query 1832 AAGAAGGCGTCAGGAATCTGGGGGTTCTTGAGTAGCGTGTTTTCGTA 1878
|||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1770 AAGAAGCCGTCAGGAATCTGGGGGTTCTTGAGCAGCGTGTTTTCGTA 1816
Score = 1277 bits (691), Expect = 0.0
Identities = 830/895 (93%), Gaps = 18/895 (2%)
Strand=Plus/Plus
Query 101 GAGGATTTAACAATGGCGtctctttctctcagttctgctcatttctcttcaacttcttct 160
||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 18 GAGGAGTTAACAATGGCGTCTCTATCTCTCACCTCTGCTCATTTCTCTTCAACTTCTTCT 77
Query 161 tcatctcgctcctctATATCCACTTCATCGCTTTCTCCGTCGTCAACTTCTCTCCCTCTC 220
|| |||||||||||| | ||||||||||||||||||||||| | ||||||||||||||
Sbjct 78 TCGTCTCGCTCCTCTGTTTCCACTTCATCGCTTTCTCCGTCCACTCCTTCTCTCCCTCTC 137
Query 221 TTACAATCACCGATCCGCCGCCGTTACCGCTCCCTCCGCCGCCGTCTCTCCTTCTCCGTC 280
|||| |||||| | ||| | | || |||||| |||||||||||||| ||
Sbjct 138 TTACGATCACC-A-------CCG--A----T-CCGCCGCCGTCGTCTCTCCTTCTCTTTC 182
Query 281 ATTCCCCGTCGGACTTCTCGCTCCTTCTCCACTTCCA---ATTCTCAGATTAGGTGTTCG 337
|| |||||||| ||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 183 ATACCCCGTCGTACTTCTCACTCCGTCTCCACTTCCAGTTCTTCTCAGATTAGGTGTTCG 242
Query 338 ATAAATGAGCCGTTGAAGGTGATGATTTCGGGTGCACCGGCTTCAGGAAAAGGCACTCAA 397
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 ATAGATGAGCCATTGAAGGTGATGATTTCGGGTGCACCGGCTTCAGGAAAAGGCACTCAA 302
Query 398 TGTGAGCTCATTGTTCACAAGTTTGGTTTGGTGCACATATCAACAGGGGATCTATTGAGA 457
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 303 TGTGAGCTCATTGTTCATAAGTTTGGTTTGGTGCACATATCAACGGGGGATCTATTGAGG 362
Query 458 GCAGAGGTGTCATCTGGGACAGATATTGGAAAGAGAGCAAAAGAGTTCATGAACTCGGGT 517
|| || |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 363 GCTGAAGTGTCAGCTGGGACAGATATTGGAAACAGAGCAAAAGAGTTCATGAATTCGGGT 422
Query 518 AGTTTGGTTCCTGATGAGATTGTTATAGCGATGGTGGCTGGAAGATTATCACGTGAAGAT 577
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 423 AGTTTGGTTCCGGATGAGATTGTCATTGCGATGGTGGCTGGAAGATTATCACGTGAAGAT 482
Query 578 GCTAAAGAGCATGGATGGCTTCTTGATGGATTTCCACGGAGTTTTGCCCAGGCACAAAGT 637
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 483 GCTAAAGAACAAGGATGGCTTCTTGATGGATTTCCACGGAGTTTTTCCCAGGCACAAAGT 542
Query 638 CTGGACAAACTGAACGTGAAACCTGACATTTTTATCTTACTAGATGTTCCTGATGAAATT 697
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 CTGGATAAACTGAACGTGAAACCTGACATTTTTCTCTTACTAGATGTTCCTGATGAAATT 602
Query 698 CTGATCGATAGATGTGTTGGTCGAAGGTTGGATCCAGTGACTGGAAAAATTTATCATATC 757
||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 603 CTGATTGATAGATGTGTTGGTAGAAGGTTGGATCCAGTGACAGGAAAAATTTATCATATT 662
Query 758 AAAAATTACCCTCCTGAATCAGATGAAATTAAAGCAAGACTGGTTACACGCCCGGATGAT 817
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 663 AAAAATTACCCTCCTGAATCAGATGAAATTAAAGCAAGACTGGTCACACGCCCTGATGAT 722
Query 818 ACAGAGGAGAAGGTAAAAGCACGGCTGCAAATATACAAACAAAATTCTGAAGCGATTATT 877
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 723 ACAGAGGAGAAGGTAAAAGCACGTCTGCAAATATACAAACAAAATTCTGAAGCGATTATT 782
Query 878 TCAGCATACTCAGATGTTATGGTCAAGATTGATGCAAACAGGCCAAAAGAAGTGGTTTTC 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCAGCATACTCAGATGTTATGGTCAAGATTGATGCAAACAGGCCAAAAGAAGTGGTTTTC 842
Query 938 GAGGAGACCCAGACTCTACTGTCTCAGATACAGTTAAAGAGAATGATAAAGACTG 992
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 843 GAGGAGACCCAGACTCTACTGTCCCAGATACAGTTAAAGAGAATGATAAAGACTG 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80637048665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5