BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35320.1 Length=1073 Score E Sequences producing significant alignments: (Bits) Value Ahg493600 jgi|Araly1|493600|fgenesh2_kg.7__3033__AT5G35320.1 1279 0.0 > Ahg493600 jgi|Araly1|493600|fgenesh2_kg.7__3033__AT5G35320.1 Length=965 Score = 1279 bits (692), Expect = 0.0 Identities = 887/977 (91%), Gaps = 30/977 (3%) Strand=Plus/Plus Query 1 AGAGAAGCTGAGAAATACCAATTTTTCTTCTATACATGTCGCTTCTCCTAACTTCTCCAG 60 ||||||||||||||| |||| ||||||||||||||||||||||||| || |||| ||||| Sbjct 1 AGAGAAGCTGAGAAAGACCACTTTTTCTTCTATACATGTCGCTTCTTCTTACTTGTCCAG 60 Query 61 AATTTTATTATTGTCTCTGCT-CAAAGCTTTCACTTGCCGTTGAACAAACGAAGAATGGA 119 |||||||| ||| |||||||| ||||| |||||||||||||||| |||||||||||||| Sbjct 61 AATTTTATCATTATCTCTGCTAAAAAGC-TTCACTTGCCGTTGAATAAACGAAGAATGGA 119 Query 120 GGAGAACGAGCGCTTGTCGATGAAGAGGAAAGATATTGACAGAGTAAACGATGACTTCTC 179 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 120 GGAGAACGAGCGCTTGTCGATGAAGAGGAAAGATATTGACAGAGTTAACGACGAATTCTC 179 Query 180 TGATTTTTCCCTCTCTTCTCCCGCCAGGAAGATTCGTCGTCTGGATGTGGATTTGCCACC 239 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TGACTTTTCCCTCTCTTCTCCCGCCAGGAAGATTCGTCGTCTGGATGTGGATTTGCCACC 239 Query 240 GATTATGGAGGAAGAAGAGATTGATTTACCGATGCAAGATACGGTCGCGGAAGAAATCGA 299 ||||||||||||||| || |||||||| |||||||||||||| |||| ||||||||| || Sbjct 240 GATTATGGAGGAAGAGGAAATTGATTTGCCGATGCAAGATACTGTCGTGGAAGAAATTGA 299 Query 300 GCTTGAGCCGGTTAACGATGAGAGAGCAATTGTTCTATTTAAGCCTCTTCATTATCATCA 359 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 GCTTGAGCCGGTGAACGATGAGAGAGCAATTGTTCTATTTAAGCCTCTTCATTATCAGCA 359 Query 360 GCCTTCTTCTGGAAACGTATTTGTTGATCGACACTTGATTTCTGGGTTTAAGAATAGATT 419 |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| Sbjct 360 GCCTTCTTCTGGAAACCTATTTGTTGATAGAGACTTGATTTCTGGGTTTAAGAATAGATT 419 Query 420 TCTTCGCGATGTATCGATAGCTGATGATAATCAGTATGAAGATGAGAGATTAAACAAGTG 479 ||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| || Sbjct 420 TCTTCGCGATGTATCAATAGCTGATGATAATCACTATGAAGATCAGAGATCCAACAAATG 479 Query 480 TCAAGCTGTTGTTTGCTGGAATCCGTCTCAGTCTACTTACTCACAGTCCATAGGAACCTT 539 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 480 CCAAGCAGTTGTTTGCTGGAATCCTTCTCAGTCTACTTACTCGCAGTCCATAGGAACCTT 539 Query 540 CCAACAACCGCGGACACTAGAGATTACTGAGTTGGATGAGACAGGTGAGGATGTGGTAAT 599 |||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||| Sbjct 540 CCAACAACCGCGTACACTAGAGATTACTGAGTTAGATGAAACAGGTGAGGATGCGGTAAT 599 Query 600 GGATGATGCATCCAATGAGATAGAAGAGGATACTGGAAGCACCAGTCTATCTTTCCCTCA 659 |||||| ||| |||||||||||||||| |||| |||||| |||||||||||||| || || Sbjct 600 GGATGAAGCAACCAATGAGATAGAAGAAGATAGTGGAAGTACCAGTCTATCTTTTCCGCA 659 Query 660 GCAAGGACAGCAGCAAGAGCAAGAGCACACCTATGGTTTTGGCTTGCATCCGTGGCAGCA 719 ||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||| Sbjct 660 ACAAGGACAGCACCAAGAGC-----C-CACCTATGGTTTTGGCTTGCATCAGTGGCAGCA 713 Query 720 AGCG-CAAAACTGTATGATTCCGCAGCTTCCTCAAGTCAGTACTACTCCCACTCCCATCA 778 | | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 714 A-CAACAAAACTGTATGATTCCGCAGCTTCCTCAAGTCAGTACTACTCCCGCTCCTGTCA 772 Query 779 CTTGGTTCCGATGATACGGCTTAACCACGGGA-A-A--A-C------T--G--AATAGGG 823 |||||||||||||||||||||||| || |||| | | | | | | ||||||| Sbjct 773 CTTGGTTCCGATGATACGGCTTAAGCATGGGAGACAGGAGCCCACCATCAGCGAATAGGG 832 Query 824 AATGCACGAAGCAG-GATAGTAGAAGGCAGATTTGTTGTTAGTTTTTGTTTCTGCCTTTT 882 ||| |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 833 AATCCACGAAGCAGAG-TAGTAGAAGGCAGATTTGTTGTTAGTTTT-GTTTCTGCCTTTT 890 Query 883 GCGCAGATTAGAGATATGGCATAGTTTTGTTGTTGTATGTTTACCAAACTAATAGCTTCA 942 |||| ||||||||||||||| ||||||||||| ||||||| ||||||||||| |||||| Sbjct 891 GCGCGGATTAGAGATATGGCGTAGTTTTGTTGCTGTATGT--ACCAAACTAATGGCTTCA 948 Query 943 GCCATATCTCCCCTAGG 959 || |||||||||||||| Sbjct 949 GCTATATCTCCCCTAGG 965 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39952817016 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5