BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35370.1
Length=2839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493603 jgi|Araly1|493603|fgenesh2_kg.7__3036__AT5G35370.1 4228 0.0
> Ahg493603 jgi|Araly1|493603|fgenesh2_kg.7__3036__AT5G35370.1
Length=2832
Score = 4228 bits (2289), Expect = 0.0
Identities = 2662/2843 (94%), Gaps = 22/2843 (1%)
Strand=Plus/Plus
Query 6 aaaaaa-aaaCAAGAACTCATTCAGATTCTTCTCTGATGATCCACTTCTTGTAATAATAA 64
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3 AAAAAACAGACAAGAACTCATTCAGATTCCTCTCTGATGATCCACTTCTTGTAATAATAA 62
Query 65 CAAAAACAAACAGAGTGGTTTCTCTATGAAATCAACGTTTCTGTTGTTGTTGTTGTTACT 124
| ||| | |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 63 C--AAA-ATACAGAGTGGTTTCTCTATGAGATCAACATTTC---AGTTGTTGTTGTCCCT 116
Query 125 TAG--T-CTCAATCTTCTCTTTGTCTTTGTTTCATGTGCTTCTTCCATAGAGTTTGTTTA 181
||| | ||||||||| ||||||||| |||||||||||| || |||| ||||||||||||
Sbjct 117 TAGTCTCCTCAATCTTTTCTTTGTCTATGTTTCATGTGCGTCGTCCACAGAGTTTGTTTA 176
Query 182 CCCTAATTTCACAGCTTCTAACCTCAGATTCGTCGATAGCTCCAAAGGAGCTTTCCTCTT 241
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 177 CCCTAACTTCACAGCTTCTAACCTCAGATTCATCGATAGCTCCAAAGGAGCTTTCCTCTT 236
Query 242 GTCTCGTAATTCCATCTTCAAAGCCGGTTTATTCAGTCCCGGCGGCGATGA---TTCCTC 298
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 CTCTCGTAATTCCAACTTCAAAGCCGGTTTATTCAGTCCCGGCGGCGATGATTCTTCCTC 296
Query 299 TACCGGTTTCTACTTCTCCGTCGTCCATGTCGATTCCGGTTCAACAATCTGGTCATCAAA 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TACCGGTTTCTACTTCTCTGTCGTCCATGTCGATTCCGGTTCAACAATCTGGTCATCAAA 356
Query 359 TCGAGATTCCCCTGTTTCAAGCTCTGGTACAATGAATCTTACTCCTCAAGGAATCTCTGT 418
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 357 TCGAGATTCCCCTGTTTCAAGCTCTGGTAAAATGAATCTTACCCCTCAAGGAATCTCTGT 416
Query 419 TATTGAAGATGGTAAAAGTCAAATACCAGTTTGGTCAACGCCGGTTTTAGCTTCTCCGGT 478
|||||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||
Sbjct 417 TATTGAAGATGGTAAAAGTCAATTACCCGTTTGGTCAACGCCGGTTTTACCCTCTCCGGT 476
Query 479 TAAGTCCCTTCGGTTAACCGACGCCGGTAATCTCCTTCTTCTTGATCACTTGAACGTTTC 538
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 TCACTCCCTTCGGTTAACCGACGCCGGAAATCTCCTTCTTCTTGATCACTTGAACGTTTC 536
Query 539 TCTATGGGAAAGCTTTGATTTTCCTACTGACTCGATCGTTCTTGGACAAAGACTTAAGCT 598
|||||||||||||||||| ||||| || |||||||||||||||||||||||||| || ||
Sbjct 537 TCTATGGGAAAGCTTTGACTTTCCCACCGACTCGATCGTTCTTGGACAAAGACTCAAACT 596
Query 599 TGGGATGTTCTTGTCCGGATCCGTCTCGCGGTCTGATTTCTCTACCGGAGATTATAAGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGGATGTTCTTGTCCGGATCCGTCTCGCGGTCTGATTTCTCTACCGGAGATTATAAGTT 656
Query 659 CTTGGTCGGTGAATCCGACGGTTTGATGCAGTGGAGAGGACAGAATTATTGGAAGCTAAG 718
||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 657 CTTGGTCGGTGAATCAGACTGTTTGATGCAGTGGAAAGGACAGAACTATTGGAAGCTAAG 716
Query 719 GATGCATATACGAGCTAATGTTGATTCTAACTTCCCTGTTGAGTATCTAACGGTCACTAC 778
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 717 GATGCATACACGAGCTAATGTTGATTCTAATTTCCCTGTTGAATATCTAACGGTCACTAC 776
Query 779 TTCAGGATTAGCTCTTATGGCACGGAACGGGACGGTGGTTGTAGTCCGCGTGGCTTTACC 838
||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct 777 TTCTGGATTAGCTCTTATGGGACGGAACGGGACGGTGGTTGTAGTCCGTGTGGCTCTACC 836
Query 839 ACCGTCCTCTGATTTCCGAGTGGCGAAGATGGATTCATCAGGTAAGTTCATCGTTAGTAG 898
|||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 837 ACCGTCGTCTGATTTCAGAGTGGCGAAGATGGATTCATCTGGTAAATTCATCGTTAGTAG 896
Query 899 ATTCTCCGGGAAGAATCTTGTGACGGAATTCTCTGGTCCTATGGATTCTTGTCAGATTCC 958
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 897 ATTCTCCGGGAAGAATCTTGTGCCGGAATTCTCTGGTCCTATGGATTCCTGTCAGATTCC 956
Query 959 GTTTGTCTGCGGTAAGCTCGGGCTTTGTAATCTTGATAACGCTTCGGAAAATCAGAGCTG 1018
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 957 GTTTGTCTGCGGTAAGCTCGGGCTTTGTCATCTTGATAATGCTTCGGAAAATCAGAGTTG 1016
Query 1019 TTCATGTCCAGATGAGATGCGAATGGATGCTGGTAAGGGTGTGTGTGTTCCGGTTAGCCA 1078
||||||||||||||||||||| ||||||| |||||||| || ||||||||||||| |||
Sbjct 1017 TTCATGTCCAGATGAGATGCGGTTGGATGCGGGTAAGGGAGTATGTGTTCCGGTTAACCA 1076
Query 1079 ATCATTGAGTTTACCTGTTTCTTGTGAAGCAAGAAACATTTCGTATCTCGAACTAGGTCT 1138
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 1077 ATCATTGAGTTTACCGGTTTCTTGTGAAGCAAGAAACATTACGTATCTCGAACTCGGCCT 1136
Query 1139 TGGTGTGTCTTACTTCTCTACTCATTTCACCGATCCTGTGGAACACGGTCTCCCGTTATT 1198
|||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 1137 TGGTGTGTCTTACTTCTCTACTCAATTCACTGATCCTGTGGAACACGATCTCCCGTTATC 1196
Query 1199 GGCTTGTCATGATATTTGCAGTAAGAATTGCTCTTGCCTCGGTGTTTTCTATGAGAACAC 1258
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 GGCTTGTCATGATCTCTGCAGTAAGAATTGCTCCTGCCTCGGTGTTTTCTATGAGAACAC 1256
Query 1259 GTCTCGGTCTTGTTATCTCGTAAAGGACTCGTTTGGTTCTTTGTCTTTAGTAAAGAACTC 1318
||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||
Sbjct 1257 ATCTCGGTCTTGTTATCTGGTTAAGGACTCGTTTGGTTCTTTGTCTCTAGTAAAAAACTC 1316
Query 1319 ACCAGAGAATCATGATCTTATTGGATACGTTAAGTTGTCTATCAGAAAAACAAA-CGCTC 1377
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1317 ACCAGACAATCATGATCTTATTGGATACGTTAAGTTGTCTATCAG-AAAACAAATCGCTC 1375
Query 1378 -AGCCTCCGGGAAACAATAACAGAGGAGGATCTAGCTTCCCTGTGATCGCACTTGTGCTC 1436
| ||| ||| |||||||||| | |||||||||| || ||| |||||||||||||||||
Sbjct 1376 AACCCT-CGGTAAACAATAAC--A-GAGGATCTAGTTTTCCTTTGATCGCACTTGTGCTC 1431
Query 1437 TTACCTTGCTCTGGTTTCTTCCTTTTGATTGCATTAGGGCTTCTCTGGTGGCGTAGATGT 1496
|||||||||||||||||||| ||| |||||||| ||||||||||||||||| | ||||||
Sbjct 1432 TTACCTTGCTCTGGTTTCTTTCTTCTGATTGCACTAGGGCTTCTCTGGTGGAGAAGATGT 1491
Query 1497 GCAGTGATGAGATACAGTAGCATCCGTGAGAAGCAAGTAACTAGACCCGGGTCGTTCGAA 1556
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| |
Sbjct 1492 GCAGTGATGAGATACAGCAGCATCCGTGAGAAGCAAGTAACAAGACCTGGGTCTTTCGGA 1551
Query 1557 TCAGGAGATCTAGGATCTTTCCATATCCCGGGGTTACCTCAGAAATTCGAATTCGAGGAG 1616
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1552 TCAGGAGATCTAGGATCTTTCCATATCCCGGGGTTACCTCAGAAATTCGAGTACGAAGAG 1611
Query 1617 CTGGAACAAGCAACTGAGAATTTCAAGATGCAGATAGGATCAGGCGGATTTGGATCAGTC 1676
|| |||||||| || |||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 1612 CTAGAACAAGCGACCGAGAATTTCAAGCTGCTGATAGGATCAGGCGGATTTGGCTCAGTC 1671
Query 1677 TACAAAGGAACTCTCCCAGATGAAACACTCATTGCTGTCAAGAAAATCACAAACCATGGA 1736
||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 1672 TACAAAGGAACTCTCCCGGACGAAACACTCATCGCGGTCAAGAAAATCACAAACCATGGG 1731
Query 1737 CTTCACGGTAGACAAGAGTTTTGTACGGAAATCGCGATAATTGGAAATATCAGACACACG 1796
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1732 CTTCACGGTAGACAGGAGTTTTGCACGGAAATCGCGATAATTGGAAATATCCGACACACG 1791
Query 1797 AATCTAGTGAAACTGCGAGGCTTTTGCGCTCGCGGGAGGCAGTTACTCTTAGTCTACGAG 1856
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1792 AATCTAGTGAAACTCCGAGGCTTTTGCGCTCGTGGGAGGCAGTTACTCTTAGTCTACGAG 1851
Query 1857 TACATGAACCATGGCTCGTTAGAAAAGACTCTGTTTAGTGGGAATGGTCCGGTGCTTGAG 1916
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 TACATGAACCATGGATCGTTAGAAAAGACTCTGTTTAGTGGGAATGGTCCGGTGCTTGAG 1911
Query 1917 TGGCAAGAAAGGTTTGATATAGCGCTCGGGACTGCTCGCGGGCTCGCGTATCTCCACAGT 1976
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1912 TGGCAAGAAAGGTTTGATATAGCGCTCGGGACAGCTCGTGGACTCGCGTATCTCCACAGT 1971
Query 1977 GGTTGCGACCAGAAGATCATACACTGCGATGTGAAGCCAGAGAACATCTTACTGCACGAT 2036
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GGATGCGACCAGAAGATCATACACTGCGATGTGAAGCCAGAGAACATCTTACTGCACGAT 2031
Query 2037 CATTTCCAACCTAAGATATCTGATTTCGGGTTATCAAAGCTTCTTAATCAAGAAGAATCA 2096
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2032 CATTTCCAACCGAAGATATCTGATTTCGGGTTATCAAAGCTTCTAAATCAAGAAGAGTCA 2091
Query 2097 AGTCTGTTCACTACGATGAGAGGTACTCGAGGCTATTTAGCTCCAGAGTGGATAACAAAC 2156
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2092 AGTCTGTTCACGACAATGAGAGGTACTCGAGGCTATTTAGCACCAGAGTGGATAACAAAC 2151
Query 2157 GCAGCGATCTCCGAGAAAGCTGATGTGTACAGCTATGGAATGGTTTTGTTAGAACTAGTG 2216
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2152 GCAGCTATCTCTGAGAAAGCTGATGTGTACAGCTATGGAATGGTTTTGTTAGAGCTAGTG 2211
Query 2217 AGTGGTAGGAAAAACTGTTCTTTTCGATCTCGGAGCAACAGTGTGACGGAGGATAATAAT 2276
|||||| ||||||| || || || ||||||||||||||||||||||||||||| ||||||
Sbjct 2212 AGTGGTCGGAAAAATTGCTCGTTCCGATCTCGGAGCAACAGTGTGACGGAGGAGAATAAT 2271
Query 2277 CAGAACCACTCGTCGACTACGACCACTAGTACTGGTTTGGTGTATTTCCCATTGTACGCT 2336
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2272 CAAAACCACTCGTCGACTACGACCACTAGTACTGGTTTGGTATATTTCCCATTGTACGCT 2331
Query 2337 TTGGATATGCATGAACAAGGGAGGTATATGGAGCTCGCTGATCCGAGGCTAGAGGGTCGG 2396
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2332 TTGGATATGCATGAACAAGGCAGGTATATGGAGCTGGCTGATCCGAGGCTAGAGGGTCGG 2391
Query 2397 GTAACGAGCCAAGAGGCTGAGAAGTTGGTTCGGATAGCTTTGTGTTGCGTCCACGAGGAG 2456
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 GTAACAAGCCAAGAGGCTGAGAAGTTGGTTCGGATAGCTTTGTGTTGCGTCCACGAGGAG 2451
Query 2457 CCAGCATTGAGGCCAACAATGGCAGCGGTAGTGGGTATGTTCGAAGGAAGTATACCGTTG 2516
||||| |||||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2452 CCAGCGTTGAGGCCGACTATGGCAGCGGTAGTGGGGATGTTCGAAGGAAGCATACCGTTG 2511
Query 2517 GGGAACCCGAGGATGGAGTCGTTGAACTTCTTGAGGTTTTATGGGCTGAGGTTTGCGGAG 2576
||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 2512 GGGAATCCGAGAATGGAGTCTTTGAATTTCTTGAGGTTTTATGGGCTGAGGTTTGCAGAG 2571
Query 2577 TCTTCCATGGTTGAAGGACAAAATGGGGAGAGTGAAACTATGGTCTTCCACCGGCGAGAG 2636
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2572 TCTTCCATGGTTGAGGGGCAAAATGGGGAGAGTGAAACTATGGTCTTCCACCGGCGAGAG 2631
Query 2637 AGCTCTAATAGTGGCGGCTCTAGGCAGTCTGCGTCTTACATAGCGTCTCAGGAAGTGTCC 2696
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2632 AGCTCTAATAGCGGCGGCTCTAGGCAGTCCGCATCTTACATAGCGTCTCAGGAAGTGTCT 2691
Query 2697 GGCCCGCGATGAGATCACCTAAATGTGAATTAtttttgtcttttgttttatttggttttg 2756
||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||||
Sbjct 2692 GGCCCGCGATGAGATTGCCTAAACGTGAATTTTTTTTGTTTTTTGTTTTATTTGTTTTTG 2751
Query 2757 gttactttgttAATAGTGATAGGCCTTGTTCATATAATCTCTACTATATATGAAAATTAT 2816
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2752 GTTACTTTGTTAATAGTGATAGGCCTTGTTCATATAATCT--ACTATATATGAAAATTAT 2809
Query 2817 TGAAAAATCTTGACATAGAGACT 2839
|| | ||| ||||||||||||||
Sbjct 2810 TGGATAATGTTGACATAGAGACT 2832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107147859185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5