BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35460.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947186 jgi|Araly1|947186|scaffold_703415.1 1805 0.0
> Ahg947186 jgi|Araly1|947186|scaffold_703415.1
Length=1180
Score = 1805 bits (977), Expect = 0.0
Identities = 1058/1097 (96%), Gaps = 5/1097 (0%)
Strand=Plus/Plus
Query 72 GAAGATTCAAACTCCAATGGACTAGACTCGTTTGATGCTGTTAAACAACGTTTCAAAGAT 131
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 45 GAAGATTCAAACTCCAATGGACTAGACTCTTTTGATGCTGTTAAACAACGTTTCAAGGAT 104
Query 132 CGATCAAAGAAAGTTGTTCAGACGAGAGAGTTGTTGTCTAAACAAGCGGTACAAACGCGT 191
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 105 CGATCAAAGAAAGTTGTTCAGACAAGAGAGTTATTGTCTAAACAAGCGGTACAAACGCGT 164
Query 192 GAGATCTTATCGAAACAAGCCGTTAAGATCGCTAAACAAGCCGAAGAACATGAGAGATTC 251
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GAGATCTTGTCTAAACAAGCCGTTAAGATCGCTAAACAAGCCGAAGAACATGAGAGATTC 224
Query 252 ATCAATAAGGTGACACATCTCGTTGGTGTGCTTGGATTTGGAGGTTTTTGTTTCCTACTT 311
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 225 ATCAATAAGGTGACACATCTTGTTGGAGTGCTTGGATTTGGAGGTTTTTGTTTCCTACTT 284
Query 312 GGTGCAAGACCTCAAGACATTCCTTTAGTTTACTGTTTCTTCTATGTGATCTTTGTTCCT 371
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GGTGCAAGACCTCAGGACATTCCTTTAGTTTACTGTTTCTTCTATGTGATCTTTGTTCCT 344
Query 372 CTTCGATGGATATATTACCGGTTTAAGAAATGGCATTATTATCTTCTGGACTTTTGCTAC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTTCGATGGATATATTACCGGTTTAAGAAATGGCATTATTATCTTCTGGACTTTTGCTAC 404
Query 432 TATGCCAATACAATCTTCTTGGTTGATCTTCTTCTGTATCCTAAGAATGAAAAGCTTTTC 491
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 405 TATGCCAATACAATCTTCTTGGTTGATCTTCTTCTGTATCCTAAGAATGAGAAGCTTTTC 464
Query 492 ATGGTTTGCTTTTCCTTTGCTGAGGGACCATTGGCGTGGGCGATTATTGTCTGGCGTTGC 551
|||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct 465 ATGGTTTGCTTTTCCTTTGCAGAGGGACCGTTGGCGTGGGCAATTATTGTGTGGCGTTGC 524
Query 552 AGTCT-GGTTTTTAGTTCGCCGGATAAGATTGTTAGTGTTCTTATACATCTCTTACCTGG 610
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AG-CTTGGTTTTTAGTTCGCCGGATAAGATTGTTAGTGTTCTTATACATCTCTTACCTGG 583
Query 611 GCTCGTGTTTTTCACGATTAGGTGGTGGAATCCAGCGACTTTTGCAGCTATGCACCCTGT 670
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 584 GCTCGTGTTCTTCACGATTAGGTGGTGGAATCCAGCGACCTTTGCAGCTATGCACCCTGT 643
Query 671 AGGCACTGATCGTAGGGTTTCATGGCCTTATGTTGAAGACAAAGCTTACCTATTCACATG 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 644 AGGCACTGATCGTAGGGTTTCATGGCCTTATGTTGAAGACAAAGCTTACCTATTTACATG 703
Query 731 GCTGTTTCTCGTCCCCTTAGTCGTTTATACTCTTTGGCAAGTGCTCTATTTTCTAATCGT 790
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GCTGTTTCTTATCCCCTTGGTCGTTTATACTCTTTGGCAAGTGCTCTATTTTCTAATCGT 763
Query 791 CAATGTCCTGCGTAGGCAGAGACTCCTTAGAGATCCTGAAGTTATGACTTCTTACAGAGA 850
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 764 CAATGTCCTGCGTAGGCAGAGACTCCTAAGAGATCCTGAAGTTATGACTTCTTACAGAGA 823
Query 851 GCTGTCGAAGAAAGCTGAAAAGGCAAACAATAAGTTGTGGCAGCTGAGCGGTCTGCTAGG 910
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 824 GCTGTCGAAGAAAGCTGAAAAAGCAGACAATAAGTTGTGGCAGCTGAGCGGTCTGCTAGG 883
Query 911 GGATCAGAATCGTATATGGATGTACATCCTATTCCAGGCCATCTTCACGGTGGCAACCAT 970
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 884 GGATCAGAACCGTATATGGATGTACATCCTATTCCAGGCCATCTTCACGGTTGCAACCAT 943
Query 971 GGCATTGACCGTACCGATCTTCCTATCTTATAGACTTCATGTGATCTTTCAGATCCTAAA 1030
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 944 GGCATTGACCGTACCGATCTTCCTATCTTATAGACTTCATCTGATCTTTCAAATCCTGAA 1003
Query 1031 GATTTCTGCGGCTGTGTGGAACGGAGGGAGCTTTTTACTAGAGGTAATGCCACGGCAAGT 1090
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 GATTTCTGCGGCAGTGTGGAACGGAGGGAGCTTTTTACTAGAGGTAATGCCACGGCAAGT 1063
Query 1091 GATCCAGAAAGAGAAGAAGAAGAAAGCTGAGATGCAGCCGATAGAGGAGCAGATACTACA 1150
||||||||||||||||||||| | || ||||||||||| |||||||||||||||| |||
Sbjct 1064 GATCCAGAAAGAGAAGAAGAA-A--GCAGAGATGCAGCCTATAGAGGAGCAGATACCACA 1120
Query 1151 TCATGAAGCTGTGTCAC 1167
|||||| |||||||||
Sbjct 1121 CCATGAACCTGTGTCAC 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5