BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35560.1
Length=2923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493617 jgi|Araly1|493617|fgenesh2_kg.7__3050__AT5G35560.1 4272 0.0
> Ahg493617 jgi|Araly1|493617|fgenesh2_kg.7__3050__AT5G35560.1
Length=2769
Score = 4272 bits (2313), Expect = 0.0
Identities = 2636/2788 (95%), Gaps = 38/2788 (1%)
Strand=Plus/Plus
Query 13 agaagaagaagatattattattatgaagaagaagaaaaaagaaaCTGACCATCTCTTCGT 72
|||||||||||| | | |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 AGAAGAAGAAGA-A-GA-TATTAT---GAAGAAGAAAAAAGAAACTGACCCTCTCTTCGT 54
Query 73 CTCTTTGTCTCTCTCTCGCTCGCAGCC-T-TT-TTATTTCCTC-AAACTTTTTTGAACCC 128
||||||||||||| ||||||||||||| | || |||||| ||| |||||||||||||||
Sbjct 55 CTCTTTGTCTCTCGCTCGCTCGCAGCCTTCTTATTATTTTCTCTTAACTTTTTTGAACCC 114
Query 129 ACGAGGATCATCTTCCTCATCATCACATCACCATCTTCTTCGTCCTCCATAATAATAATC 188
|||||||||||||| ||||||||||| || ||||||| || |||||||||||||||| |
Sbjct 115 ACGAGGATCATCTTTCTCATCATCAC--CATCATCTTCCTCCTCCTCCATAATAATAAAC 172
Query 189 -AACTTCTTCTCCTTTATTC-CAAGTTCCGATTAGTTTCA-GAG-TTTTTCAATTGCTTG 244
|||||||||| ||| || ||| | ||| ||| || |||||||||||||||
Sbjct 173 AAACTTCTTCT--TTT-CTCTGAAGAAGAAACTAG-GTCACCAGTTTTTTCAATTGCTTG 228
Query 245 C-TTAAGTTTCTTTGCGTA-GTGTTG-AGTAAGTTATGGCCAAGAATGAGGAAGGAAGTA 301
| ||||| || |||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 229 CTTTAAG-TT-TTTGCGTAGGTG-TGAAGTAAGTTATGGCCAAGAATGAGGAAGGAAGTA 285
Query 302 GTAGTCCGAGCTGGGGTGCTTCGTTTTTCATGCAGACTTCAGAAGATGTTGCAATGGCTT 361
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 286 GTAGTCCGAGTTGGGGTGCTTCGTTTTTTATGCAGACTTCAGAAGATGTTGCAATGGCTT 345
Query 362 TTGCTGCTGCGGCTTCTGCGATAAACCCGCCAAGGCCGTCTGTTGTCTTTTCGTCGAAAG 421
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 346 TTGCTGCTGCGGCTTCTGCGATAAACCCGCCAAGGCCTTCTGTTGTCTTTTCGTCGAAAG 405
Query 422 ATGAAGGTAGCGATAGTCCTTTGGAGAGGTTACAGAGGCAGGTTTCGAAAGCGGTTAAGA 481
|||||||||| ||||| ||| |||||||||||||||||||||| || ||||||||||| |
Sbjct 406 ATGAAGGTAGTGATAGCCCTCTGGAGAGGTTACAGAGGCAGGTGTCTAAAGCGGTTAAAA 465
Query 482 ACTTCTATGAAACTCCTAAGACCAAGAGTGTATTGTACAATCCTGAGGTTTTGACTAGCC 541
|||||||||||| ||||||||| |||| |||| |||| ||||||||||||||||||||||
Sbjct 466 ACTTCTATGAAAATCCTAAGACGAAGAATGTAATGTATAATCCTGAGGTTTTGACTAGCC 525
Query 542 AAAAGCGTCAATGGGCGAAATTTCAGGATCATAAACCATTAAAAGATCCATCAAGGCTTT 601
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 526 AAAAGCGTCAATGGGCGAAATTTCAGGATCATAAACCATTGAAAGATCCATCAAGGCTTT 585
Query 602 TTGAAAGCGTTGTTGTGGTTGGACTTCATCCTAATTGTGATATTCAAGCACTTGAGAGGC 661
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 586 TTGAAAGCGTTGTTGTTGTTGGACTTCATCCTAATTGTGATATCCAAGCACTTGAGAGGC 645
Query 662 AGTACATTGCTCGAAAATCTGAAGGCTCTTC-GGGAAGATTGCGAAGTGCTCTTGTCTCT 720
|||||||||| |||||||||||||||||||| ||| |||||||||||||| || || |||
Sbjct 646 AGTACATTGCACGAAAATCTGAAGGCTCTTCTGGG-AGATTGCGAAGTGCACTGGTTTCT 704
Query 721 CAAAATCATTCCCGTGTAGAACCCAGTCTCGAACCACAGGTCTTACTTGTGTACCCTCCC 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAAATTCATTCCCGTGTAGAACCCAGTCTCGAACCACAGGTCTTACTTGTGTACCCTCCC 764
Query 781 GATAAGCAGCCTCCAATTAAATACAAGGATCTTCATTCATTTTGCTTTCCTGGAGGCATT 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 765 GATAAGCAGCCTCCAATTAAGTACAAGGATCTTCATTCATTTTGCTTTCCTGGAGGCATT 824
Query 841 GAGGTCCATGCTGTTGAGAGAACTCCTTCCATGAGCGAGTTGAGTGAGATTATTCTCAGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GAGGTCCATGCTGTTGAGAGAACTCCTTCCATGAGCGAGTTGAGTGAGATTATTCTCAGT 884
Query 901 CAGGAACATCTTAGACCAAGTGACCTTTCATTTGTATTTAGGTTACAGGTTGCTGATAAT 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CAGGAACATCTGAGACCAAGTGACCTTTCATTTGTATTTAGGTTACAGGTTGCTGATAAT 944
Query 961 TCTACTTTGTATGGATGCTGCTTACTAGTGGAAGAAATAGTGAACAAACCGTCCAGATTG 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TCTACTTTGTATGGATGTTGCTTACTAGTGGAAGAAATAGTGAACAAACCGTCCAGATTG 1004
Query 1021 CTTTCCACGGTTTTGGACAAACAACCTGCTTGCTCATCATTAAGTCGCTATGTTATGACA 1080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CTTTCCACAGTTTTGGACAAACAACCTGCTTGCTCATCATTAAGTCGCTATGTTATGACA 1064
Query 1081 ACTCGCAGATGCTATTGCGTCCTTACCAGACTGCCGTTTTTTGAATTGCATTTTGGTGTA 1140
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACTCGCAGATGCTATTGCATCCTTACCAGACTGCCGTTTTTTGAATTGCATTTTGGTGTA 1124
Query 1141 TTAAATAGCATCTTCTTGGAAGAAAGACTAGAGCATTTGATGAGTGGCATCAGTTGTGCG 1200
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1125 TTAAATAGCATCTTCTTGGAAGAAAGACTGGAGCATTTGATGAGTGGCATCAGTTGTGCA 1184
Query 1201 TCTTTAGAACCCCCAACAGATTTCAGCAATGAAGATAGCTTAAATGATTCATCACCCCAA 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1185 TCTTTAGAACCCCCAACAGATTTCAGCAATGTAGATAGCTTAAATGATTCATCACCCCAA 1244
Query 1261 CAAAGAGACTCTGGGGACACAAAAGAACAAACTGTTGAAGCAGGTTCCA-AACTCCCTAA 1319
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1245 CAAAGAGACTCTGGGAACACAAAAGAACAAACTGTTGAAGCAGGTTC-AGAACTCCCTAA 1303
Query 1320 AGCTGACGAAATTTCAGATAATGGGACTTGTGAGGCTAATCAGAAAGCTGATGACTCTGC 1379
|||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 1304 AGCTGACGAAATTTCAGAAAATGGGACTTGTGAGGCGAATCAGAAAGTTGACGACTCTGC 1363
Query 1380 AGAGTCTATTGACCGTGTCACCAAAGCTGATGATTCCTTACCAATTATTAAGCAAGGCAG 1439
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 AGAGTCTAACGACTATGTCCCCAAAGCTGATGATTCCTTACCAATTATTAAGCAAGGCAG 1423
Query 1440 AGAAAGTTGTTTACCAGAGCCTGGCCCCCTTCTTCGGTGTCCTTATCTGGATGAGATCTC 1499
|||||||||||||||||| |||||||||||||||||||| || ||| |||||||||||||
Sbjct 1424 AGAAAGTTGTTTACCAGATCCTGGCCCCCTTCTTCGGTGCCCGTATTTGGATGAGATCTC 1483
Query 1500 TGATTCTAGCACTAGCTTTCAGGCTGCTCCATGTGAGAGGAGGCATTCTAGGACCAGTGC 1559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1484 TGATTCTAGCACTAGCTTTCAGGCTGCTCCTTGTGAGAGGAGGCATTCTAGGACCAGTGC 1543
Query 1560 AGATGATACTGAGACAGATGAAGCATCCTTTTCTGGTCAAGATGATACAAGTAGTAATTT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1544 AGATGATACTGAGACAGATGAAGCATCCTTTTCTGGTCAAGATGATACAAGCAGTAATTT 1603
Query 1620 TGATATCCTTGAGTGGGCAAAGTCCaaaaaaaaTGGGTCGTTGCAAATATTATGTGAGTA 1679
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1604 TGATATTCTTGAGTGGGCAAAGTCCAAAAAAAATGGGTCGCTGCAAATACTATGTGAGTA 1663
Query 1680 TTACCAATTAAAATGCCCGGCAAGAGGTTCAACTATTACATTTCATCCTTTGGAGCATCT 1739
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TTACCAATTAAAATGCCCAGCAAGAGGTTCAACTATTACATTTCATCCTTTGGAGCATCT 1723
Query 1740 TCATCCGGTTGAATATCATAGACCTAATGAAGTGGCATTGCATACTCCTGGATCAGCAAT 1799
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1724 TCATCCGGTTGAATATCATAGACCTGATGAAGTGGCATTGCATACTCCTGGATCAGCAAT 1783
Query 1800 TGATCTAAGATCATGCAGCACTAGTCTAGAACTCGCGGAGGCACACACAACACTCATGGC 1859
||| | ||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 1784 TGACCGAAGATCATGCAGCACTAGTCTAGAACTCGTGGAGGCACACACTGCGCTCATGGC 1843
Query 1860 TGAGGAAGAAGCAGCTGCATTATCAACATGGGCTGTTGCCTCCTTATGTGGATCACTGCG 1919
||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 1844 TGAGGAAGAAGCAGCTGCACTATCAACATGGGCTGTTGCTTCGTTATGTGGATCACTGCG 1903
Query 1920 GCTTGACAATGTCTTGATGATACTAGCAGGAGCACTGCTTGAGAAACAGATTGTATTTGT 1979
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1904 GCTTGACAATGTCTTGATGATCCTAGCAGGAGCACTGCTTGAGAAACAGATTGTATTTGT 1963
Query 1980 TTGCTCTAATTTGGGAATCTTAGCAGCATCAGTTTTATCAATTATCCCAGTAATCCGTCC 2039
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1964 TTGCTCTAATTTGGGAATCTTAGCAGCATCAGTTCTATCAATTATCCCAGTAATCCGTCC 2023
Query 2040 CTTTCGGTGGCAGAGCCTTTTAATGCCGGTTTTGCCAGATGATATGCTGGAATTTTTGGA 2099
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2024 CTTTCGGTGGCAGAGCCTTTTAATGCCGGTATTGCCAGATGATATGCTAGAATTTTTGGA 2083
Query 2100 TGCCCCAGTCCCTTACATAGTTGGGGTGAAGAACAAAACTAGCGAAGTTCAGTCGAAACT 2159
|||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2084 TGCCCCAGTCCCGTACATAGTTGGGGTAAAGAACAAAACAAGTGAAGTTCAGTCGAAACT 2143
Query 2160 AACAAATGTTATCGTCGTGGATATTCTAAAGAACCAGGTTAAGTCACCAAGTATGCCCCA 2219
||||||||||||||| |||||| || | ||||||||||||||||||||||||||||| ||
Sbjct 2144 AACAAATGTTATCGTAGTGGATGTTTTTAAGAACCAGGTTAAGTCACCAAGTATGCCTCA 2203
Query 2220 GCTGCCTCAGTATCGAGACTTATATAATGCGCTAAGTCCTTATCACTCAAAGCTCGTCGG 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2204 GCTGCCTCAGTATCGAGACTTATATAATGCGCTAAGTCCTTATCACTCAAAGCTCGTTGG 2263
Query 2280 AGAAAGCTACCTAGCAAAGAAAAGACCAGTGTATGAATGTACTGATGTGCAGGTGGATGC 2339
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2264 AGAAAGCTATCTAGCAAAGAAAAGACCAGTATATGAATGTACTGATGTGCAGGTGGATGC 2323
Query 2340 TGCAAAAGGCTTCATGGATGTCCTAAGGTCGTACCTTGATTCTCTTTGCTCTAATCTGCA 2399
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2324 TGCAAAAGGCTTCCTGGATGTCCTAAGGTCGTACCTTGATTCTCTTTGCTCTAGTCTGCA 2383
Query 2400 GTCACACACCATAACAAATGTGCAATCCAACAACGATAAGGTATCACTTCTCCTAAAGGA 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384 GTCACACACCATAACAAATGTGCAATCCAACAACGATAAGGTATCACTTCTCCTAAAGGA 2443
Query 2460 AAGTTTCATCGACTCCTTTCCCAGTCGTCAGCGCCCGTTCATGAAGCTATTTGTGGATAC 2519
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2444 AAGTTTCATTGACTCCTTTCCTAGTCGTCAGCGCCCGTTCATGAAGCTATTCGTGGATAC 2503
Query 2520 ACAACTCTTCTCTGTACATACAGATCTCGTTCTTTCCTTTATCCAGAAGCTATAGGATGA 2579
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 2504 ACAACTCTTCTCTGTACATACAGATCTCGTTCTTTCCTTCATTCAGAAGCTATAGGATAA 2563
Query 2580 CTACATGTATACGTAAAACAAGTCTTGGTGGTGG-AA-A---CACAATACCTCGCGATGA 2634
||||||||||||||||||||||||||| |||||| || | ||||||||| |||||| |
Sbjct 2564 CTACATGTATACGTAAAACAAGTCTTGTTGGTGGGAACAGAACACAATACCCCGCGATAA 2623
Query 2635 AAGTGCCATCGATTCTGTATTTGTAACTTACTGTTTGAGAATGTTGTCTATGGaaaaaaa 2694
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2624 AAGTGCCATCGATTCTGTATTTGTAACTTACTGTTTGAGAAAATTGTCTATGGAAAAA-- 2681
Query 2695 GACTTCCATAGATGAGGGTTTGATACAGAGAACCATCATTTC-TTTGTATCCTCCAACCG 2753
||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||| |
Sbjct 2682 GACTTCCATAGATGAGGATTTGATACAGAGAACCATCATCTCCTTTGTATCCTTCAAACA 2741
Query 2754 CAAACACAGTTGGTGTTTTAACTCTTAA 2781
||||||||||||||||||||||||||||
Sbjct 2742 CAAACACAGTTGGTGTTTTAACTCTTAA 2769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110347439765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5