BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35580.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355547 jgi|Araly1|355547|fgenesh1_pg.C_scaffold_7002720 1895 0.0
Ahg930902 jgi|Araly1|930902|scaffold_303359.1 773 0.0
Ahg952599 jgi|Araly1|952599|scaffold_9200009.1 63.9 3e-09
Ahg482930 jgi|Araly1|482930|fgenesh2_kg.4__1990__AT2G39110.1 63.9 3e-09
> Ahg355547 jgi|Araly1|355547|fgenesh1_pg.C_scaffold_7002720
Length=1341
Score = 1895 bits (1026), Expect = 0.0
Identities = 1136/1191 (95%), Gaps = 0/1191 (0%)
Strand=Plus/Plus
Query 1 TCTTGGAGATCATTGATGGTTTTGTGTTTCCAAGATCCAGACAACATATATTCTCCCAAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 TCTTGGAGATCATTAATGGTTTTGTGTTTCCAAGATCCAGACAACATATATTCTCCCAAG 81
Query 61 AAGACAAAGAAAGATGATGGTGAACGTGTGATTACCAAACAGAAATCGTTTCTTGGATTG 120
||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||
Sbjct 82 AAGACAAAGAAAGATGATGGTCAAGGTGTGATAACCAAACAGAAATCGTTTCTCGGATTG 141
Query 121 TCGATTCTAGACATAAGTAATCCAAGTTCCACTACCTTGTCCGAAGATCTCTCAATCTCC 180
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 142 TCGATTCTAGACATAAGCAATCCAAGTTCCACTACCTTTTCGGAAGATCTCTCAATCTCT 201
Query 181 CTCGCCGGCTCGGATCTCCACGTGTTCACACAAGCAGAGCTTAGAGTCATAACACAAAGC 240
||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 202 CTCGCCGGCTCCGATCTCCATGTATTCACACAAGCAGAGCTTAAAGTCATAACACAAAGC 261
Query 241 TTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGTCCGGTTCATAAAGGGTTCATC 300
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 262 TTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGGCCGGTTCACAAAGGGTTTATT 321
Query 301 GATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTTCTTGATCTT 360
|| |||| ||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 322 GACGACAGGCTCCGTCCTGGTCTTAAGGCTCAGCCTGTCGCTGTTAAACTTCTCGATCTT 381
Query 361 GATGGTCTTCAAGGTCACCGTGAGTTTATGACGGAGGTTATGTGTTTGGGAAAACTAAAG 420
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 382 GATGGTCTTCAAGGTCACCGTGAGTGGATGACGGAGGTCATGTGTTTGGGAAAACTAAAG 441
Query 421 CATCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGCACATAGACTTCTTGTT 480
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 442 CACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAGACTTCTTGTT 501
Query 481 TATGAGTTCATGCCTCGTGGAAGTTTGGAGTCTCAACTCTTCAGAAGGTGCTCCCTACCG 540
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 502 TATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAGGTGTTCCCTACCG 561
Query 541 CTGCCATGGACAACGAGGTTGAACATCGCTTATGAAGCTGCAAAGGGTCTACAGTTTCTA 600
|||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 562 CTGCCATGGACAACTAGGTTGAAGATCGCTTACGAAGCTGCCAAGGGTCTACAGTTTCTC 621
Query 601 CATGAAGCCGAGAAGCCCATCATCTATCGCGATTTCAAGGCCTCTAATATCTTGTTAGAT 660
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 622 CATGAAGCCGAGAAGCCTGTCATCTATCGCGATTTCAAGGCCTCCAATATCTTGTTAGAT 681
Query 661 TCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGAT 741
Query 721 GATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAGAGTACATA 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GATACACATGTGTCCACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAGAGTACATA 801
Query 781 ATGACAGGTCATTTAACGGCTAAGAGTGATGTGTACAGCTTTGGAGTGGTGTTGCTTGAG 840
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 802 ATGACAGGTCATCTAACGGCTAAGAGTGATGTATACAGCTTTGGAGTGGTGTTGCTTGAG 861
Query 841 CTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCATCAAGAAAAGAAACCCTCGTT 900
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 862 CTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCGTCAAGGAAAGAAACCCTCGTT 921
Query 901 GAGTGGGCTCGTCCAATGCTCAACGACGCACGTAAACTCGGGAGAATAATGGACCCGAGG 960
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 922 GAGTGGGCTCGTCCAATGCTCAACGACGTACGTAAACTCGGGAGAATAATGGACCCGAGG 981
Query 961 CTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAACTCTAGCTTATCAATGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAACTCTAGCTTATCAATGC 1041
Query 1021 CTAAGGTACCGACCAAAGACAAGGCCAGACATTAGCACTGTTGTCTCCGTTCTCCAAGAC 1080
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1042 CTAAGGTACCGACCAAAGACCAGGCCAGACATCAGCACTGTTGTCTCAGTTCTCCAAGAC 1101
Query 1081 ATCAAAGATTACAAAGATGATATTCCCATTGGGATATTCACTTACACCGTTCCTACCAAG 1140
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 1102 ATCAAAGATTACAAAGATGATATTCCCATTGGGGTATTCACTTACACGGTTCCTACTAAA 1161
Query 1141 CCACGCCGGGAAGTTAAAGAGACAAGTCTTCAAAACTTTGACAAGCCACGC 1191
||| |||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1162 CCAAGCCGTGAAGTTAAAGTGACAAGTCTTCAAAACTTTGACAAGCCTCGC 1212
> Ahg930902 jgi|Araly1|930902|scaffold_303359.1
Length=1459
Score = 773 bits (418), Expect = 0.0
Identities = 768/935 (82%), Gaps = 32/935 (3%)
Strand=Plus/Plus
Query 121 TCGATTCTAGACATAAGTAATCCAAGTTCC-ACTACCTTGTCCGAAGATCTCTCAATCTC 179
|||||||| || || || |||||||||||| || || || || |||||||| || || ||
Sbjct 159 TCGATTCTTGATATGAGCAATCCAAGTTCCAAC-ACTTTATCAGAAGATCTATCGATTTC 217
Query 180 CCTCGCCGGCTCGGATCTCCACGTGTTCACACAAGCAGAGCTTAGAGTCATAACACAAAG 239
| ||||| || |||||||| ||||| || | ||||||||||| |||||| ||||||||
Sbjct 218 TTTGGCCGGATCAGATCTCCATGTGTTTACCCTAGCAGAGCTTAAAGTCATTACACAAAG 277
Query 240 CTTCTCTTCTAGC-AACTTT-CTTGGTGAAGGAGGGTTTGGTCCGGTTCATAAAGGG-TT 296
||| || || | | || ||| || |||||||||||||||||||| |||||| ||||| ||
Sbjct 278 CTTTTCATCGA-CTAA-TTTCCTCGGTGAAGGAGGGTTTGGTCCTGTTCAT-AAGGGTTT 334
Query 297 CATCGATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTT-CTTG 355
||||||||| ||||| |||||||||||||| |||||||| ||||| |||||| || ||||
Sbjct 335 CATCGATGATAAGCTACGTCCTGGTCTTAAAGCTCAGCCTGTTGCTGTTAAA-TTGCTTG 393
Query 356 ATCTTGATGGTCTTCAAGGTCACCGTGAGTTTATGACGGAGGTTATGTGTTTGGGAAAAC 415
||||||| |||||||||||||||||||| | ||||||| ||||||| ||||||| ||
Sbjct 394 ATCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAAT 453
Query 416 TAAAGCATCCGAATC-TGGTGAAGCTGATCGGATATTGCTGCGAGGAAGCACATAG-ACT 473
| |||||| || | ||||||| |||| || ||||| || ||||||| |||||| ||
Sbjct 454 TGAAGCAT-AAAAACTTGGTGAAATTGATTGGTTATTGTTGTGAGGAAGAACATAGAAC- 511
Query 474 TCTTGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGTCTCAACTCTTCAGAAGGTGCTC 533
|||||||||||||||||||||||||||||| || ||| |||||| |||||||| | |||
Sbjct 512 TCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTTTTCAGAAGATACTC 571
Query 534 --CCTACCGCTGCCATGGACAACGAGGTTGAACATCGCTTATGAAGCTGCAA-AGGGTCT 590
||| | ||| |||||| |||| || |||| |||||| ||| |||||||| ||| ||
Sbjct 572 TGCCT-C-GCTTCCATGGTCAACAAGAATGAAGATCGCTCATGGAGCTGCAACAGGA-CT 628
Query 591 ACAGTTTCT-ACATGAAGCCGAGAAGCCCATCATCTATCGCGATTTCAAGGCCTCTAATA 649
|| || || ||| |||||||| || ||| | |||||||| |||||||| ||||| ||||
Sbjct 629 TCAATT-CTTACACGAAGCCGAAAATCCCGTTATCTATCGGGATTTCAAAGCCTCGAATA 687
Query 650 TCTTGTTAGATTCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGAC 709
||||||||||||| ||||| || ||||||||||| ||||||||| |||| ||||||||||
Sbjct 688 TCTTGTTAGATTCGGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGAC 747
Query 710 CACAAGGCGATGATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACGCGGCGC 769
|| |||| || || || || ||||| || || ||||||||||||||||| |||||||| |
Sbjct 748 CAGAAGGAGACGACACTCACGTGTCAACGCGAGTGATGGGCACACAAGGCTACGCGGCTC 807
Query 770 CAGAGTACATAATGACAGGTCATTTAACGGCTAAGA-GTGATGTGTACAGCTTTGGAGTG 828
| || ||||| ||||| ||||||||||| || |||| |||| ||||||||||| |||||
Sbjct 808 CTGAATACATCATGACCGGTCATTTAACAGC-AAGAAGTGACGTGTACAGCTTCGGAGTC 866
Query 829 GTGTTGCTTGAGCTGTTGACAGGTCGGAA-ATCGGTGGACATAGCGAGATCATCAAGA-A 886
|||||||| ||||| ||||| || || || ||| || |||| | ||||||||| || |
Sbjct 867 GTGTTGCTCGAGCTTTTGACTGGACG-AAGATCAGTAGACAAAAAGAGATCATCGAGGGA 925
Query 887 A-AGAAACCCTCGTTGAGTGGGCTCGTCCAATGCTCAACGACGCACGTAAACTCGGGAGA 945
| |||| || | || || |||||||||||||||||||| ||| |||||||||| | ||
Sbjct 926 ACAGAA-CC-TAGTGGACTGGGCTCGTCCAATGCTCAATGACCCACGTAAACTATGTCGA 983
Query 946 ATAATGGACCCGAGGCTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAAC- 1004
|| ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||||
Sbjct 984 ATCATGGACCCGAGACTTGAAGGTCAGTACTCAGAGACAGGAGCAAGAAAAGCAGCAACA 1043
Query 1005 TCTAGCTTATCAATGCCTAAGGTACCGACCAAAGA 1039
| | ||||| ||||| |||| ||||||| ||||
Sbjct 1044 T-TGGCTTACCAATGTTTAAGCCACCGACCCAAGA 1077
> Ahg952599 jgi|Araly1|952599|scaffold_9200009.1
Length=1347
Score = 63.9 bits (34), Expect = 3e-09
Identities = 41/44 (93%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 419 AGCATCCGAATCTGGTGAAGCTGATCGGATATTGCTGC-GAGGA 461
|||||||||||||||||||||||||||| |||||| || |||||
Sbjct 465 AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGC-GCTGAGGA 507
> Ahg482930 jgi|Araly1|482930|fgenesh2_kg.4__1990__AT2G39110.1
Length=1387
Score = 63.9 bits (34), Expect = 3e-09
Identities = 41/44 (93%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 419 AGCATCCGAATCTGGTGAAGCTGATCGGATATTGCTGC-GAGGA 461
|||||||||||||||||||||||||||| |||||| || |||||
Sbjct 519 AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGC-GCTGAGGA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5