BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35917.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325159 jgi|Araly1|325159|fgenesh1_pm.C_scaffold_6000379 1554 0.0
Ahg887655 jgi|Araly1|887655|Al_scaffold_0022_8 1485 0.0
> Ahg325159 jgi|Araly1|325159|fgenesh1_pm.C_scaffold_6000379
Length=1599
Score = 1554 bits (841), Expect = 0.0
Identities = 1003/1082 (93%), Gaps = 8/1082 (1%)
Strand=Plus/Plus
Query 9 CGACTCTACCTCAATGCTTGCGTTTATCCTAGGTTTGCTTCTCCTAT-CATTAACAATGA 67
|||||| ||| |||||||||||||||| ||||||||||||||||| | ||||||| ||||
Sbjct 6 CGACTCCACCCCAATGCTTGCGTTTATTCTAGGTTTGCTTCTCCT-TGCATTAACTATGA 64
Query 68 AGCGTAAAGAGACGAAGAAAACCATGTTAATGACTAGCCACACGAGAAACCTCTCTCTTC 127
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 65 AGCGTAAGGAGACGAAGAAAACCATGTTAATGACTAGCCACACGAGAAACCTCTCTCTCC 124
Query 128 CTCCGGGGCCAAAATCTTGGCCTTTAGTTGGAAACCTACCAGAAATACTAGGGAGGAACA 187
|||| ||||| |||||||||||| || | |||||| |||| || ||||||||||||||||
Sbjct 125 CTCCCGGGCCGAAATCTTGGCCTCTAATCGGAAACTTACCGGACATACTAGGGAGGAACA 184
Query 188 AACCGGTGTTCCGGTGGATACATTCAT-TGATGGAAGAACTCAACACCGATATTGCATGT 246
|||||||||||| ||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 185 GACCGGTGTTCCGTTGGATACATTC-TCTTATGAAAGAACTCAACACCGATATTGCATGT 243
Query 247 ATCCGTCTTGCGAATACTCACGTGATCCCCGTGACATCCCCGAGAATTGCAAGGGAGATT 306
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATCCGTCTTGCCAATACTCACGTGATCCCCGTGACATCCCCGAGAATTGCAAGGGAGATT 303
Query 307 CTGAAGAAGCAAGACTCCGTTTTCGCCATTAGACCGCTAACAATGGGGACGGAGTATTGC 366
|||||||||||||||||| ||||||||| |||||| |||||||||||||| ||||| |||
Sbjct 304 CTGAAGAAGCAAGACTCCCTTTTCGCCACTAGACCACTAACAATGGGGACAGAGTACTGC 363
Query 367 AGCCGCGGGTACTTGACCATTGCGGTGCAGTCACAAGGAGAGCAGTGGAAAAAGATGAGG 426
||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||
Sbjct 364 AGCCGCGGGTACTTGACTATTGCGGTGGAGCCACAAGGAGAGCAGTGGAAGAAGATGAGG 423
Query 427 AGAGTGGTGGCATCTCACGTGACAAGCAAGAAGAGCTTCAAATTGATGCTTGAAAAGAGA 486
||||||||| ||||||||||||| ||||||||||||||| |||||| ||| ||||||||
Sbjct 424 AGAGTGGTGTCATCTCACGTGACGAGCAAGAAGAGCTTCCAATTGACGCTCCAAAAGAGA 483
Query 487 ACCGAAGAGGCAGATAACTTAGTCCGGTACATCAATAACCGCTGTGTCAAAAACCGTGGT 546
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 484 ACCGAAGAGGCTGATAACTTCGTCCGGTACATCAATAACCGCAGTGTCAAAAACCGTGGT 543
Query 547 AATGGTAATGGTCT-TGCGGTTATTGATTTAAGATTTGTGGTACGACAATACAGCGGGAA 605
|||||||||||| | || ||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 544 AATGGTAATGGT-TATGTGGTTATTGATTTAAGGCTTGTGGTGCGGCAATACAGCGGAAA 602
Query 606 TGTAGCTCGGAAGATGATGTTTGGTATACGGCATTTTGGTAAAGGAAGTGAAGATGAATC 665
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 603 TGTAGCTCGGAAGATGATGTTTGGTATAAGGCATTTTGGTAACGGAAGTGAAGATGGATC 662
Query 666 GGGACCAGGGTCCGAAGAGATTGAACATGTCGAATCTTTGTTTACGGTTTTAACCCATCT 725
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 663 GGGACCAGGGTTCGAAGAGATTGAACATGTGGAATCTTTGTTTACGGTTTTAACCCATCT 722
Query 726 TTACGCCTTTGCATTGTCGGATTATGTCCCGTGGTTAAGGTTCTTGGACTTGGAAGGCCA 785
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 723 TTACGCCTTTGCATTGTCAGATTATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGGCA 782
Query 786 TGAGAAGGTTGTG-GCTGACGCAATGAGAAATGTAAGTAAGTATAACGATCCTTTTGTCG 844
||||||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 783 TGAGAAGATTGTGAG-TGATGCAATGAGAAAGGTAAGTAAGTATAACGATCCTTTTGTTG 841
Query 845 ATGAAAGACTCATGCAATGGCGAAATGGGAAGATGAAAGAGCCTCAAGATTTTCTCGACA 904
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 842 ATGAAAGACTTATGCATTGGCGAAATGGGAAGATGAAAGAGCCTCAAGATTTTCTTGACA 901
Query 905 TGTTTATAATGGCGAAAGACACCAACGGAAAGCCTACTCTATCGGAAGAAGAGATCAAAG 964
||||||||||||| |||||||| |||| ||||||||||| ||||| |||||||||||||
Sbjct 902 TGTTTATAATGGCAAAAGACACTGACGGGAAGCCTACTCTGTCGGACGAAGAGATCAAAG 961
Query 965 CACAAGTGACGGAACTAATGTTGGCTACAGTAGATAATCCGTCTAATGCGGCGGAGTGGG 1024
||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 962 CACAAGTGACGGAGCTAATGTTGGCGACGGTGGATAATCCGTCTAATGCGGCAGAGTGGG 1021
Query 1025 CTATGGCGGAGATGATTAACGAGCCGAGCATCATGCAAAAAGCTGTGGAGGAGATCGATA 1084
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1022 CTATGGCGGAGATGATTAACGAGCCAAGCATCATGCAAAAAGCCGTGGAGGAGATCGATA 1081
Query 1085 GG 1086
||
Sbjct 1082 GG 1083
> Ahg887655 jgi|Araly1|887655|Al_scaffold_0022_8
Length=1392
Score = 1485 bits (804), Expect = 0.0
Identities = 978/1063 (92%), Gaps = 8/1063 (1%)
Strand=Plus/Plus
Query 9 CGACTCTACCTCAATGCTTGCGTTTATCCTAGGTTTGCTTCTCC-TATCATTAACAATGA 67
|||||||||| || || ||| |||||| |||||||||||||||| || ||||||| ||||
Sbjct 6 CGACTCTACCCCAGTGTTTGTGTTTATTCTAGGTTTGCTTCTCCTTA-CATTAACTATGA 64
Query 68 AGCGTAAAGAGACGAAGAAAACCATGTTAATGACTAGCCACACGAGAAACCTCTCTCTTC 127
||||||| |||||||| ||||||||| || | | | |||||||||||||||||||||| |
Sbjct 65 AGCGTAAGGAGACGAACAAAACCATGATATTCATTTGCCACACGAGAAACCTCTCTCTCC 124
Query 128 CTCCGGGGCCAAAATCTTGGCCTTTAGTTGGAAACCTACCAGAAATACTAGGGAGGAACA 187
|||| ||||| |||||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 125 CTCCCGGGCCGAAATCTTGGCCTCTAATAGGAAACCTGCCAGAAATACTAGGGAGGAACA 184
Query 188 AACCGGTGTTCCGGTGGATACATTCAT-TGATGGAAGAACTCAACACCGATATTGCATGT 246
| ||||||||||||||||||||||| | | ||| ||||||| |||||||||||||| |||
Sbjct 185 AGCCGGTGTTCCGGTGGATACATTC-TCTCATGAAAGAACTTAACACCGATATTGCGTGT 243
Query 247 ATCCGTCTTGCGAATACTCACGTGATCCCCGTGACATCCCCGAGAATTGCAAGGGAGATT 306
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 244 ATCTGTCTTGCGAATACTCACGTGATCTCCGTGACATCCCCGAGAATTGCAAGGGAGATT 303
Query 307 CTGAAGAAGCAAGACTCCGTTTTCGCCATTAGACCGCTAACAATGGGGACGGAGTATTGC 366
|||||||||||||||||||||| |||| ||||||||||||||| || |||||| | |||
Sbjct 304 TTGAAGAAGCAAGACTCCGTTTTTGCCACTAGACCGCTAACAATAGGCACGGAGCACTGC 363
Query 367 AGCCGCGGGTACTTGACCATTGCGGTGCAGT-CACAAGGAGAGCAGTGGAAAAAGATGAG 425
|| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 364 AGTCGCGGGTACTTGACCATTGCGGTGGA-TCCACAAGGAGAGCAGTGGAAAAAGATGAG 422
Query 426 GAGAGTGGTGGCATCTCACGTGACAAGCAAGAAGAGCTTCAAATTGATGCTTGAAAAGAG 485
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 GAGAGTGGTGGCATCTCACGTGACGAGCAAGAAGAGCTTCAAATTGATGCTTGAAAAGAG 482
Query 486 AACCGAAGAGGCAGATAACTTAGTCCGGTACATCAATAACCGCTGTGTCAAAAACCGTGG 545
|||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 483 AACCGAAGAGGCTGATAACTTGGTCCGGTACATCAATAACCGCAGTGTCAAAAACTGTGA 542
Query 546 TAATGGTAATGGTCTTGCGGTTATTGATTTAAGATTTGTGGTACGACAATACAGCGGGAA 605
|||||||||||||||| |||||||||||||||| ||||| | || ||||||||||| ||
Sbjct 543 TAATGGTAATGGTCTTTCGGTTATTGATTTAAGGCTTGTGTTGCGGCAATACAGCGGAAA 602
Query 606 TGTAGCTCGGAAGATGATGTTTGGTATACGGCATTTTGGTAAAGGAAGTGAAGATGAATC 665
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 603 TGTAGCTCGGAAGATGATGTTTGGTATAAGGCACTTTGGTAAAGGAAGTGAAGATGGATC 662
Query 666 GGGACCAGGGTCCGAAGAGATTGAACATGTCGAATCTTTGTTTACGGTTTTAACCCATCT 725
||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 663 GGGACCAGGGTTCGAAGAGATTGAACATGTTGAATCTTTGTTTACAGTTTTAACCCATCT 722
Query 726 TTACGCCTTTGCATTGTCGGATTATGTCCCGTGGTTAAGGTTCTTGGACTTGGAAGGCCA 785
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 723 TTACGCCTTTGCATTGTCGGATTATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCA 782
Query 786 TGAGAAGGTTGTGGCTGACGCAATGAGAAATGTAAGTAAGTATAACGATCCTTTTGTCGA 845
|||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 783 AGAGAAGATTGTGATTGACGCAATGAGAAATGTAAGCAAGTATAACGATCCTATTGTCGA 842
Query 846 TGAAAGACTCATGCAATGGCGAAATGGGAAGATGAAAGAGCCTCAAGATTTTCTCGACAT 905
||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||
Sbjct 843 TGAAAGACTCATGCAATGGCGAAATGGAAATATGAAAAAGCCTCAAGATTTTCTTGACAT 902
Query 906 GTTTATAATGGCGAAAGACACCAACGG-AAAGCCTACTCTATCGGAAGAAGAGATCAAAG 964
||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||||||||
Sbjct 903 GTTTATAATGGCGAAAGACACTGACGGGAAA-CCTACTCTGTCGGACGAAGAGATCAAAG 961
Query 965 CACAAGTGACGGAACTAATGTTGGCTACAGTAGATAATCCGTCTAATGCGGCGGAGTGGG 1024
||||||||| ||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 962 CACAAGTGAAGGAACTAATGTTGGCGACGGTGGATAATCCGTCTAATGCGGCGGAATGGG 1021
Query 1025 CTATGGCGGAGATGATTAACGAGCCGAGCATCATGCAAAAAGC 1067
| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1022 CCATGGCGGAGATGATTAATGAGCCGAGCATCATGCAAAAAGC 1064
Score = 392 bits (212), Expect = 4e-108
Identities = 260/283 (92%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 1109 GTG-AAGAGACATTTCGGTTACATCCGGTGGCGCCATTCAACCTCCCTCACATGTCCACT 1167
||| ||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1072 GTGAAAGAGGCATTCCGGTTACATCCCGTGGCGCCGTTCAACCTCCCTCACATGTCCACT 1131
Query 1168 G-CTGATGCTGTGGTGGATGGTTACTTCATCCCCAAGGGAAGCCACATGCTTATTAGTCG 1226
| || | |||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1132 GCCT-ACGCTGTGGTAGACGGTTACTTCATCCCCAAGGGAAGCCACATGCTAATTAGTCG 1190
Query 1227 TATGGGGATCGGGAGAAACCCTAATGTGTGGGACAAGCCGCTTAAATTTAACCCTGAGAG 1286
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1191 TATGGGGATCGGGAGAAACCCTAGCGTGTGGGACAAGCCGCTTAAGTTCGACCCTGAGAG 1250
Query 1287 ACATTTAGGCAATAACTCATCCATGACGTACATGTTGCTGGCTCGGTTGATTCAAGGGTT 1346
|||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ACATTTGGGCAATAACAAAACCATGACGTACATGTTGCTGGCTCGGTTGATTCAAGGGTT 1310
Query 1347 CACATGGTCACCAGTGCCTGGTGAAAGTAAAATTGATATTTCA 1389
||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 1311 CACGTGGTCACCAGTGCCCGGTGAAAGTAAAATTGATCTTTCA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5