BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36000.1 Length=1068 Score E Sequences producing significant alignments: (Bits) Value Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120 1587 0.0 Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117 318 4e-86 > Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120 Length=1080 Score = 1587 bits (859), Expect = 0.0 Identities = 1003/1072 (94%), Gaps = 12/1072 (1%) Strand=Plus/Plus Query 9 GAGATCTGGTGATGCCGAAGGAGATATTAGAGGGAAGATGATAGCTCCGGTGAGAGACGG 68 |||||||||||||| |||||||||| ||||||||||| ||| | ||||||| ||||||| Sbjct 9 GAGATCTGGTGATGTTGAAGGAGATAGTAGAGGGAAGAGGATCGTTCCGGTGGGAGACGG 68 Query 69 AAATGGTGGACAGAAGAGAAAATTGGT----A-C-A-G---AG--CAACGATATTCAGAG 116 ||||||||||| ||||||||||||||| | | | | || |||||| ||||||| Sbjct 69 AAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGATCTTCAGAG 128 Query 117 AGACGAAGATGGTGGAGCAAAGAGAAGAATCATTCAGAGCAGCGACCAGAAGAACGGGAA 176 ||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 129 AGACGAAGATGGTAGAGCGAAGAGAAGAATCGTTCAGAGCAGCGACCAGAAGAACGGGAA 188 Query 177 GATCCTGAGAGGAATCCATGGCTGTGTATCTCCTCGGTGCTCTGCTCCGACTTACCAGTC 236 |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 189 GATCCTCAGAGGAATTCATGGCTGTGTATCTCCTCGGTGCTCTGCTCAGACTTACCAGTC 248 Query 237 TCGCTTCTCCTGGTATGAGCAAGATATATGGACATACATAACAAGGTTTTTGGATGGTAA 296 ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 249 TCGCTTCTCATGGTTTGAGCAAGATATATGGACATACATTTCAAGGTTTTTGGATGGTAA 308 Query 297 ATCATTGGTGAAGCTGGGAGCAACGAACAAATGGTTCTATAAGATTGCAATGGAGGATAC 356 |||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 309 ATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTACAAGATCGCAATGGAGGATAC 368 Query 357 TGTTTGGAGGTTTGCATGCTTGCGTGATCTTCAGGTCCCTGAGACGTTTCCAGTTTCTTC 416 ||||||||||||||| |||||||||||||||||||||||| || ||||||| |||||||| Sbjct 369 TGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTCAGCCGTTTCCCGTTTCTTC 428 Query 417 CACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCACCA 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 429 CACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCGTCA 488 Query 477 GAAGGAGAAGCATATTGATTGGATGCGTCTTGGTGCCTTTGTTCTTGACTCTCGAACTTC 536 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 489 GAAGGAGAAGCATATTGATTGGATGCGGATTGGTGCCTTTGTTCTTGACTCTCGAACTTC 548 Query 537 ATTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAAGTCCCAACAGAAGGAACTATAGAACA 596 | ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| Sbjct 549 ACTCCTGACTGAGAGTTTGAGTGGTCGACTGAAAGTCCCAAGGGAAGGAACCATAGAATG 608 Query 597 AATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTATTTGGATTGC 656 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 609 AATGTTACAATCTAGTGGTTCATGTGTTATCAACGACATCAAAAGCGGTATTTGGATTGC 668 Query 657 AGATTTACAGCTTTTGCGTTGCCCTCTTTGTGACCTCAGTACCTGTGATGGAACAATGCA 716 |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 669 GGATTTACAGCTTGTGCGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGGAACAATGCA 728 Query 717 AACTCTTGATGTTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGATGGAAGCTG 776 ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 729 AACACTTGATGCTAGGCACATTGAACTGTTCCTTAGTGAAGGCTACAAAGATGGAAGCTG 788 Query 777 GGATTATAATCTGATTGGATCTCATAAGTTGGAGAAAGACGCAAGTGCAGCCTGTGGAGC 836 |||||| ||||| ||||||||||||||||| |||||||||||| |||||| |||||||| Sbjct 789 GGATTACAATCTTATTGGATCTCATAAGTTACAGAAAGACGCAAATGCAGCTTGTGGAGC 848 Query 837 CATATTTGACCTCAAACACCTTAAAAAATCTTCATCCTCAGGTATTCTCAACCTCAAGTC 896 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 849 CATATTTGATCTCAAACACCTTAAAGAATCTTCATCCTCAGGTATTCTCAACCTCAAGTC 908 Query 897 TTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGC 956 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 909 TTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCATGCAGTTGC 968 Query 957 TGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGC 1016 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 969 TGTTCACACAAGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGC 1028 Query 1017 AGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 AGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1080 > Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117 Length=300 Score = 318 bits (172), Expect = 4e-86 Identities = 184/190 (97%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 878 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTA 937 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 107 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTGAAGCAGTTA 166 Query 938 TTGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGA 997 | |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 167 TCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATACTTGTGA 226 Query 998 AGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGC 1057 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 227 AGTACCACACAATGAAAGCAAGAACAGACGGTGACATTGTTTCCATAAGAATCTCCCAGC 286 Query 1058 AGCTTCTCTG 1067 |||||||||| Sbjct 287 AGCTTCTCTG 296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39762202431 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5