BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36230.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947269 jgi|Araly1|947269|scaffold_703498.1 2159 0.0
Ahg475532 jgi|Araly1|475532|fgenesh2_kg.2__662__AT1G65220.1 1371 0.0
> Ahg947269 jgi|Araly1|947269|scaffold_703498.1
Length=1277
Score = 2159 bits (1169), Expect = 0.0
Identities = 1242/1278 (97%), Gaps = 2/1278 (0%)
Strand=Plus/Plus
Query 115 TCTCTTCTTTGATCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTCTTTGATCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGG 60
Query 175 ATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCA 120
Query 235 GTGGTCCAGATTTACCATG-ATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGA 293
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGGTCCAGATTTACC-TGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGA 179
Query 294 GTCATCAGACCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTATTTTCATAGG 353
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 GTCATCAGATCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTGTTTTCATAGG 239
Query 354 AGGACGCACACAACCTGGAACAGTGAAATCTGATGAAGGAGAACGTCATACTTACTCTGT 413
||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 240 AGGACGCACACAAGCTGGAACAGTGAAATCTGATGAAGGGGAACGCCATACGTACTCTGT 299
Query 414 AATTGATTGTGAACCCAAGCGTGAAGCCATTTTGCCATCTGTTGTCTACATACAGAAAAT 473
|||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 AATTGACTGTGAACCCAGGCGTGAAGCCATTTTGCCGTCTGTTGTCTACATACAGAAAAT 359
Query 474 TCTGCGTAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACTCGGAGATTCCTGCA 533
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCTGCGGAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACCCGGAGATTCCTGCA 419
Query 534 GTCACTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGC 593
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GTCACTGGAGCTTTTTGAGGAAAACGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGC 479
Query 594 CTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTCTTCCAGCCATTGCTCAAGGA 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTTTTCCAGCCATTGCTCAAGGA 539
Query 654 TAATCTTGTTGCCAAAGGGATAGTGCTCTCCTTCGTAACAGACTTCTTCAAGGAGTATTT 713
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TAATCTTGTTGCCAAAGGGATAGTGCTCTCATTCGTAACAGACTTCTTCAAGGAGTATTT 599
Query 714 GGTTGAGAACAGTCTTGAAGACTTGATTTCTATTCTGAGGCGTGGGAAAATGGAAGACAA 773
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 GGTTGAGAACAGTCTTGAAGACTTGATCTCTATTCTGAGGCGTGGAAAAATGGAAGACAA 659
Query 774 CCTTATGGATTTCCTACCACCAGTAAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCAC 833
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 660 CCTTATGGATTTCCTACCACCTGTTAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCAC 719
Query 834 GAATGAAGGATTGACTGATCTAGTAGAGTACCATTCAAAGAAAATGTTTGAGGTGAAACT 893
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GAATGAGGGATTGACCGATCTAGTAGAATACCATTCAAAGAAAATGTTTGAGGTGAAACT 779
Query 894 GAGGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTAGACGAAGT 953
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 AAAGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTCGACGAAGT 839
Query 954 CATTGAATCGGTGAAGCAACAGATCAAAGATGCTAAGTTACCTGACATTGAGGTTGTGCG 1013
|||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||
Sbjct 840 CATTGAATCGGTGAAGCAACAGATCAAAGAAGCTAAGATGCCTGACATTGAAGTTGTGCG 899
Query 1014 TGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAA 1073
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTCGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAA 959
Query 1074 TGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCACTTCTGAACACGTTCTGTAC 1133
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 TGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCGCTTCTGAACACGTTCTGTAC 1019
Query 1134 CAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGC 1079
Query 1194 AAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCTCGC 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 AAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTACTCGC 1139
Query 1254 TGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGGCAAACCTT 1313
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 TGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACAAACTCAAAGGGCAGGCAAACCTT 1199
Query 1314 TGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGAGT 1373
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGTGAAAAGCTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGAGT 1259
Query 1374 GATCTATGTTTCTAATAA 1391
|||||||||| |||||||
Sbjct 1260 GATCTATGTTCCTAATAA 1277
> Ahg475532 jgi|Araly1|475532|fgenesh2_kg.2__662__AT1G65220.1
Length=1419
Score = 1371 bits (742), Expect = 0.0
Identities = 1097/1266 (87%), Gaps = 34/1266 (3%)
Strand=Plus/Plus
Query 127 TCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 186
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCTTGGTTTATGAGCTCAAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 130
Query 187 AAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATT 246
||| ||||||||||||||||||| |||||||| || ||||||||||| || || ||||||
Sbjct 131 AAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCTGTAGTTCAGATT 190
Query 247 TACCATG-ATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATT-GAGTCATCAGACC 304
|| | || ||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 191 TATC-TGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGT-TTAGAGTCATCTGATC 248
Query 305 TTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTATTTTCATAGGAGGACGCACAC 364
|||||||| ||||||| ||||| || |||||||||||| ||||||| |||||||| ||||
Sbjct 249 TTAATTTCTCAAGATACGGTGATATTTTCTTTGAGGTTGTTTTCATTGGAGGACGTACAC 308
Query 365 AACCTGGAACAGTGAAATCTGATGAAGGAGAACGTCATACTTACTCTGTAATTGATTGTG 424
|| |||| ||||||||||||||||||| ||||| || |||||||| |||| || ||||
Sbjct 309 AAACTGGTTCAGTGAAATCTGATGAAGGGGAACGCCACCCTTACTCTATAATCGACTGTG 368
Query 425 AACCCAA-GCGTGAAGCCATTTTGCCATCTGTTGTCTACATACAGAAAATTCTGCGTAGG 483
|||| || ||||||||| ||||| ||||| ||||| ||||||||||||||| |||| |||
Sbjct 369 AACC-AACGCGTGAAGCTATTTTACCATCAGTTGTATACATACAGAAAATTTTGCGGAGG 427
Query 484 AA-GCCTTTCCTCATAAAGAACCTTGAAAATGTTACTCGGAGATTCCTGCAGTCACTGGA 542
|| ||||| ||| || |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 428 AAAGCCTT-CCTTATTAAGAACCTTGAAAATGTTACGCGGAGATTCTTGCAGTCACTGGA 486
Query 543 GCTTTTTGAGGAAAATGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGCCTTTTCCCA 602
|||||||||||| ||||| |||||||||||||| || |||||||| || || ||||||||
Sbjct 487 GCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCAATATTCACAGCGCTCGCATTTTCCCA 546
Query 603 GAAGCTCTCAGGATTACCTCCGGAAACTGTCTTCCAGCCATTGCTCAAGGATAATCTTGT 662
||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 547 GAAGCTCTCAGGATTACCTGCAGAGACTGTCTTCCAGCCATTGCTTAAGGATAATCTTGT 606
Query 663 TGCCAAAGGGATAGTGCTCTCCTTCGTAACAGACTTCTTCAAGGAGTATTTGGTTGAGAA 722
||||||||||||||| ||| || ||||||||||||||||| || ||||||||||||||
Sbjct 607 TGCCAAAGGGATAGTTCTCAATTTTGTAACAGACTTCTTCAATGAATATTTGGTTGAGAA 666
Query 723 CAGTCTTGAAGACTTGATTTCTATTCTGAGGCGTGGGAAAATGGAAGACAACCT-TATGG 781
||||||||| |||||||||||||||||||||||||| || ||||| ||||| || | |||
Sbjct 667 CAGTCTTGATGACTTGATTTCTATTCTGAGGCGTGGCAAGATGGATGACAAACTCT-TGG 725
Query 782 ATTTCCTACCACC-AGTAAGGCG-ATCTGCTGAAAGTTTTGCGGAACATTTCACGAATGA 839
| ||||| ||||| | ||| || | || ||||||||||||| || |||||||| || |
Sbjct 726 AGTTCCTGCCACCCACAAAG-CGGA-CTACTGAAAGTTTTGCCGAGCATTTCACCAAGGC 783
Query 840 AGGATTGACTGATCTAGTAGAGTACCATTCAAAG-AAAATGTTTGAGGTGAAACTGAGGG 898
||||||||| | ||| ||||||||| || |||| ||||| ||||||||||| |||| ||
Sbjct 784 AGGATTGACAGCTCTGGTAGAGTACAATG-AAAGGAAAATATTTGAGGTGAAGCTGAAGG 842
Query 899 AAATCAAAACCGTTCTTACAAGC-AAGGTCACAGAGGAAAGTAAT-GTAGACGAAGTCAT 956
|||||||| | || ||||| ||| ||| | |||||||||| ||| ||||| ||||| ||
Sbjct 843 AAATCAAAGCGGTCCTTACGAGCCAAG-TGACAGAGGAAA-TAAACGTAGATGAAGTGAT 900
Query 957 TGAATCGGTGAAGCAACA-GATCAAAGATGCTAAGTTACCTGACATTGAGGTTGTGCGTG 1015
|||| ||||||||||||| | | |||||||| ||| | ||||| ||||||||||||| ||
Sbjct 901 TGAAACGGTGAAGCAACAAG-TGAAAGATGCAAAGCTGCCTGAGATTGAGGTTGTGCATG 959
Query 1016 TTGTT-TGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAAT 1074
| | | |||||||| ||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 960 T-GATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGGAAAAACCAGCAGCAAAAT 1018
Query 1075 GCAAATTCTGT-TCTGCGCCAGGTGAAAACATGGGCTCCACTTCTGAACACGTTCTG-TA 1132
||||| |||| | | ||||| |||||||||||||| ||||||||||||||| | || |
Sbjct 1019 TCAAATGCTGTAT-TACGCCAAGTGAAAACATGGGCGCCACTTCTGAACACGCTGTGCTG 1077
Query 1133 CCAGCGGAAAGC-TAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGAT 1191
| ||||| || | | ||| ||||||||||||||||||| || |||||||||||||| |||
Sbjct 1078 C-AGCGGGAA-CATGGAGATGGAACTGATGTACAAAGTACAGATGCAATGCTATGAAGAT 1135
Query 1192 GCAAAGCTTATGAAAGT-TTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCT 1250
|||||||| |||||||| ||||| ||| ||||||||||| || |||||||| ||||| ||
Sbjct 1136 GCAAAGCTGATGAAAGTGTTTCC-AGAGGTAGTGAGGTCTCTGTATGAACTTGATGTGCT 1194
Query 1251 CGCTGAAGACACCATTCTCCACTGGT-TCCGTAAAGGAACCAACTCAAAGGGCAGGCAAA 1309
|||||||||||||||||||||||||| || | ||||| |||||| ||||||||||||||
Sbjct 1195 CGCTGAAGACACCATTCTCCACTGGTATC-GCAAAGGGACCAACCCAAAGGGCAGGCAAG 1253
Query 1310 CCTTTGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGT 1369
| |||||||| | || || || |||||||||||||| |||||||| || ||||| ||||
Sbjct 1254 CGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTGGAAGAGGCCGAAGAAGAGGAGT 1313
Query 1370 GAGTGA 1375
||||||
Sbjct 1314 GAGTGA 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5