BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36250.1 Length=2039 Score E Sequences producing significant alignments: (Bits) Value Ahg493662 jgi|Araly1|493662|fgenesh2_kg.7__3095__AT5G36250.1 2645 0.0 > Ahg493662 jgi|Araly1|493662|fgenesh2_kg.7__3095__AT5G36250.1 Length=1933 Score = 2645 bits (1432), Expect = 0.0 Identities = 1642/1742 (94%), Gaps = 19/1742 (1%) Strand=Plus/Plus Query 265 CCCTCTAA-GTCTCTC-CAATTCTTCTCCATTAGCTATAAAGTCGATTCCTTTATCACCG 322 ||||| || ||||||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 183 CCCTC-AATGTCTCTCTC-ATTCTTCTCCA-GAGCTATAAAGTCGATTCCTTTATCACCC 239 Query 323 TTCTGAAGAATTTGGTCGAAAGTTTTGGCCTTTAGTACCCAATTTTCAATCCTGGCGATA 382 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 240 TTGTGAAGAATTTGGTCGAAAGTTTTGGCCTTTAGCACCCAATTTTCAATCCTGGCGATA 299 Query 383 ACTGAATTGAAAAGGGTTCCAAAAGTTACATCACCTGAAAACAACAGTGCTTTTGATTGT 442 ||||||||||||||||||||||||| | |||||||||||||||| | | |||||||||| Sbjct 300 ACTGAATTGAAAAGGGTTCCAAAAGGTCCATCACCTGAAAACAATA--G-TTTTGATTGT 356 Query 443 GTTGGTGGTTTGGAGTGCTTGATAAGTTTAATCAGGGCCCTTGATATGGGGTCCTGCTTA 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GTTGGTGGTTTGGAGTGCTTGATAAGTTTAATCAGGGCCCTTGATATGGGGTCCTGCTTA 416 Query 503 TCATCATCTGGAGGTGGAGGAAGCAGGAGATCTCTCCATGGCTCTCCTCATGTTCCTGGT 562 |||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 417 TCATCATCTGGA---GGAGGAAGTAGGAGATCTCTTCATGGTTCTCCTCATGTTCCTGGA 473 Query 563 CCTGGGAGGAGGAAGAGGCCTCCCAAGAGGAGACCTGGGTCTTGTAGTTCTTCGTTTGAT 622 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 474 CCTGGTAGGAGGAAGAGGCCTCCCAAGAGGAGACCTGGGTCTTGTAGTTCTTCCTTCGAT 533 Query 623 AACACCGAGGAGCCACTTCTTCATAGGATCCCTGGAAGGATGTTTTTGAATGGCTCTACA 682 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 534 AACACCGAGGAGCCACTTCTTCATAGGATCCCTGGAAGGATGTTCTTGAATGGCTCTACC 593 Query 683 GACACCGTGTCTCTCTTCTCTCAACAGGGCAAGAAAGGACCTAATCAGGACGCTATGATT 742 ||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 594 GACACCGCCTCTCTTTTCTCTCAACAGGGCAAGAAAGGACCTAATCAGGATGCCATGATT 653 Query 743 GTTTGGGAGAATTTTGGGTCTATGGAGGACACTGTGTTTTGTGGTGTTTTTGATGGTCAT 802 || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 654 GTCTGGGAGAATTTTGGGTCTATGGCGGACACTGTTTTTTGTGGTGTTTTTGATGGTCAT 713 Query 803 GGTCCGTATGGTCACATTGTTGCAAAGAGAGTGAGGGATTTGCTTCCACTCAAGTTAGGT 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 GGTCCGTATGGTCACATTGTTGCAAAGAGAGTGAGGGATTTGCTTCCACTCAAGTTAGGT 773 Query 863 TCTCATTTGGAGTCCTATGTGTCCCCTGAGGAGGTTCTTAAAGAGATTAGCCTTAACACT 922 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 774 TCTCACTTGGAGTCATATGTGTCCCCTGAGGAGGTTCTTAAAGAGATTAGCCTCAACACC 833 Query 923 GATGATAGAAAGATCTCAGAAGACCTTGTACATATATCTGCCAATGGAGAATCACGAGTC 982 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 834 GGTGATAGAAAGATCTCAGAAGACCTTGTGCATATATCTGCCAATGGAGAATCACGAGTC 893 Query 983 TACAATAAGGATTATGTGAAGGATCAAGATATGATTCAAATGCT-AATAGGCTCAATTGT 1041 ||||||||| |||| || |||||||| ||||||||| ||| || ||||||||||||||| Sbjct 894 TACAATAAGAATTACGTAAAGGATCAGGATATGATTGAAAA-CTTAATAGGCTCAATTGT 952 Query 1042 TAAAGCCTACAGATTCATGGATAAGGAATTGAAGATGCAAGTTGATGTTGATTGTTTTTG 1101 ||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 953 TAAAGCCTATAGATTTATGGATAAGGAGTTGAAGATGCAAGTGGATGTTGATTGTTTTTG 1012 Query 1102 CAGTGGAACAACTGCAGTTACCATGGTTAAGCAGGGTCAACATCTTGTTATCGGGAATAT 1161 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 1013 CAGTGGAACAACTGCAGTTACTATGGTCAAGCAGGGTCAACATCTTGTTATCGGTAATAT 1072 Query 1162 CGGGGATTCAAGAGCAGTATTGGGTGTGAGGAACAAAGACAATAAACTTGTTCCTTTTCA 1221 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1073 TGGGGATTCAAGAGCAGTATTGGGTATGAGGAACAAAGACAATAAACTTGTTCCTTTTCA 1132 Query 1222 ATTAACTGAAGATCTCAAACCAGATGTTCCAGCTGAAGCAGAAAGGATAAAGAGATGCAG 1281 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1133 ATTAACTGAAGATCTCAAACCAGATGTTCCAGCGGAAGCAGAAAGGATAAAGAGATGCAG 1192 Query 1282 AGGACGTATATTTGCTCTTCGAGATGAACCGGGAGTTGCCCGTCTGTGGCTTCCTAACCA 1341 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1193 AGGACGTATATTTGCTCTTCGAGATGAACCAGGAGTTGCTCGTCTGTGGCTTCCTAACCA 1252 Query 1342 CAACTCACCTGGTCTAGCCATGGCACGTGCTTTTGGAGATTTTTGCCTCAAAGACTTCGG 1401 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 CAACTCACCTGGTTTAGCCATGGCACGTGCTTTTGGAGATTTTTGCCTCAAAGACTTCGG 1312 Query 1402 TCTAATTTCTGTACCTGACGTCTCCTACCGACGCCTCACTGAGAAGGATGAATTTGTTGT 1461 ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1313 TCTCATTTCTGTACCTGACGTGTCCTACCGACGCCTCTCTGAGAAGGATGAATTTGTTGT 1372 Query 1462 CTTGGCAACTGATGGGATTTGGGATGCATTGACGAATGAAGAGGTTGTAAAGATAGTAGC 1521 |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| Sbjct 1373 CTTGGCAACTGATGGGATTTGGGATGTATTGACGAATGAAGAGGTAGTAGAGATAGTAGC 1432 Query 1522 GAAAGCTCCAACGCGTTCCTCAGCAGGTCGAGCATTGGTGGAGGCTGCAGTGCGTAACTG 1581 ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| || || Sbjct 1433 CAAAGCCCCAACACGTTCCTCAGCAGGTCGAGCCTTGGTGGAGGCTGCAGTGCGGAATTG 1492 Query 1582 GAGATGGAAGTTCCCGACTTCAAAAGTCGATGACTGTGCCGTAGTTTGCCTATTCCTTGA 1641 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1493 GAGATGGAAGTTCCCAACTTCAAAAGTCGATGACTGTGCCGTAGTTTGCCTCTTCCTTGA 1552 Query 1642 CTCCGAACCAAACAGATTGTCAACTGCTTCTTTCTCAAAAGAAAAACACATCAACAATGG 1701 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1553 CTCCGAACCGAACAGATTGTCAACTGCTTCTTTCTCAAAGGAAAAACACATCAACAATGG 1612 Query 1702 CGTTACTGAACCTGAACCAGACACAGCATCATCATCAACTCCAGACTCAGGAACCGGATC 1761 ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1613 TGTTACTGAACCGGAACCAGACACAGCATCATCATCATCTCCAGACTCAGGAACCGAATC 1672 Query 1762 GCCTGAGCTCAATGGAGTCAACAGAATCGATACACTTGTGAATCTCCCAGTATATGTCCC 1821 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1673 GCCTGAGCTCAATGGAGTCAACAGAATCGACACACTTGTGAATCTCCCAGTATATGTCCC 1732 Query 1822 AACCAAAGAGTAGGAAG-ATAGAACAGA-GCCAGGAGCTCAATGTCTCCTATGCTCTATG 1879 |||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||| Sbjct 1733 AACCAAAGAGTAGGAAACATAGAACAGATGC-AGGAGCTCAATGTCTCCTATGCTCAATG 1791 Query 1880 TTTCTATCAACAGTTACTGTTTTGGTCATTTACCTCGGGTAAAATTACTGTTACACGCCC 1939 ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1792 TTTCTGTCAACAGTTACTGTTTTGGTCATTTACCTCGGTTAAA-TTACTGTTACACGCCC 1850 Query 1940 GTGCTCGTGTGTGACTCATTGTATATATCTTCTTTTTCAAATCATTGTAATACTTTTGCT 1999 | || ||||||| || |||||||||||||||| || ||| |||||||||||||||| || Sbjct 1851 G--CTTGTGTGTGGCTGATTGTATATATCTTCTCTTCCAATTCATTGTAATACTTTTTCT 1908 Query 2000 AC 2001 || Sbjct 1909 AC 1910 Score = 254 bits (137), Expect = 2e-66 Identities = 176/192 (92%), Gaps = 14/192 (7%) Strand=Plus/Plus Query 45 TTCCTTCCTTTTGGATCCGATTCTATCTCCACCTTCAAGCACAATATTCGACTCGGTACT 104 |||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1 TTCCTTCCCTTTGGATCCGATTCTATCTCCACCTTCAAGCA-A-TATTCGACTCGGTACT 58 Query 105 CTCTCT-T-TCT-T-CTTCTTATTGCAAAAAGATTCTCTTTTTATCTGTTTTGTGGATAT 160 |||||| | ||| | ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 59 CTCTCTCTCTCTCTTCTTCTTATTGCAAAAAGATTCTCTTTTTATCAGTTTTGTGGAT-- 116 Query 161 AGAGATTCTGGATAAAAACAATCATCTTTTTTCTCTCAAAAATCTCTGCTTAAGAACTGG 220 |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| Sbjct 117 -GAGATTCTGGATAAAA-CAATCATCTTTTT-CTC--AAAAATCTCTGCTTAAGAACTGG 171 Query 221 GATTCTTCAAAA 232 ||||||| |||| Sbjct 172 GATTCTT-AAAA 182 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76675663185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5