BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36700.1 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg493675 jgi|Araly1|493675|fgenesh2_kg.7__3108__AT5G36790.2 1829 0.0 > Ahg493675 jgi|Araly1|493675|fgenesh2_kg.7__3108__AT5G36790.2 Length=1354 Score = 1829 bits (990), Expect = 0.0 Identities = 1087/1135 (96%), Gaps = 1/1135 (0%) Strand=Plus/Plus Query 18 aaaaaataccaaaagaagcggaaacagagaaaaagagag-aaaaaTGCTGAGTAGATCAG 76 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 1 AAAAAATACCAAAAGAAGCGAAAACAGAGAAAAAGAGAGAAAAAATGCTGAGTAGATCAG 60 Query 77 TTGCTTCTGCTGTTACACCGGTCTCATCTTCTTCTCTCTTACCAAACTCAAAGCCTATCT 136 |||| ||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||| Sbjct 61 TTGCATCTGCTGTTTCACCGGTCTCTTCTTCTTCTCTCTTACAAAACTCAAAACCTATCT 120 Query 137 TCTGTCTGAAAACCCTCTCCGGTTATCGTTCTTCTTCTTTCTGTGGCGGCTGTATTCGTA 196 ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 121 TCTGTCTCAAAACCCTCTCCGGTTATCGTTCTTCTTCTTTCTGCGGCGGCTCCATTCGTA 180 Query 197 AAATCAACCATAAGCCTCTTCGAATGACGAGTTCCAATATTACACCAAGAGCTATGGCCA 256 |||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct 181 AAATCAACCATAAGCCTCTTCGAATGACTAGTTCTAATATGACTCCAAGAGCTATGGCCA 240 Query 257 CACAACAGCTTGAGAACGCTGATCAGCTCATTGATTCTGTCGAAACTTTTATCTTCGATT 316 | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 241 CGCAACAGCTTGAAAACGCTGATCAGCTCATTGATTCTGTCGAGACTTTTATCTTCGATT 300 Query 317 GTGATGGTGTGATTTGGAAGGGAGATAAATTGATAGAGGGAGTTCCTGAAACTCTTGATA 376 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 301 GTGATGGTCAGATCTGGAAGGGAGATAAATTGATTGAGGGAGTTCCTGAAACTCTTGATA 360 Query 377 TGCTTCGTGCCAAGGGAAAGAGATTGGTTTTTGTGACAAACAACTCAACAAAATCTAGGA 436 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 361 TGCTTCGTGCCAAGGGAAAGAGGTTGGTTTTTGTCACAAACAACTCAACAAAATCTAGGA 420 Query 437 AACAGTATGGAAAAAAGTTCGAGACTCTTGGCCTGAATGTTAACGAGGAGGAGATATTTG 496 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 421 AACAGTATGGAAAAAAGTTTGAGACTCTTGGTCTGAATGTTAACGAGGAGGAGATATTTG 480 Query 497 CTTCATCTTTTGCTGCTGCTGCATACTTGCAGTCTATTAATTTCCCAAAAGATAAGAAGG 556 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTTCATCTTTTGCTGCAGCTGCATACTTGCAGTCTATTAATTTCCCAAAAGATAAGAAGG 540 Query 557 TCTATGTGATTGGTGAGGAAGGTATCTTGAAAGAGCTAGAGCTTGCTGGTTTTCAATACC 616 | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 541 TATACGTGATTGGTGAGGAAGGTATCTTGAAAGAGCTCGAGCTTGCTGGTTTTCAATACC 600 Query 617 TTGGAGGTCCGGATGATGGTAAAAGACAGATTGAATTGAAGCCAGGTTTTCTAATGGAGC 676 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 601 TTGGAGGTCCGGATGATGGTAAAAGACAGATTGAATTGAAGCCAGGATTTCTAATGGAGC 660 Query 677 ATGATCATGATGTTGGAGCTGTTGTGGTTGGATTTGATCGCTATTTCAACTACTACAAAA 736 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATGAACATGATGTGGGAGCTGTTGTGGTTGGATTTGATCGCTATTTCAACTACTACAAAA 720 Query 737 TTCAGTATGGAACACTCTGTATCCGTGAAAACCCGGGGTGTCTTTTCATCGCTACAAACC 796 |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 721 TTCAGTATGGAACACTATGTATCCGCGAAAACCCGGGGTGTCTTTTCATTGCTACAAACC 780 Query 797 GAGATGCTGTCACTCACCTTACTGATGCTCAAGAATGGGCAGGTGGTGGCTCTATGGTTG 856 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 781 GAGATGCAGTCACTCACCTTACCGATGCTCAAGAATGGGCAGGTGGTGGCTCTATGGTTG 840 Query 857 GTGCTCTTGTTGGATCCACTCAACGTGAGCCTCTTGTTGTTGGAAAACCCTCAACTTTTA 916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GTGCTCTTGTTGGATCCACTCAACGTGAGCCTCTTGTTGTTGGAAAACCCTCAACTTTTA 900 Query 917 TGATGGACTATTTAGCAGACAAATTTGGAATCCAAAAGTCACAGATATGCATGGTTGGTG 976 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 901 TGATGGACTATTTAGCAGACAAATTTGGAATCCAAAAGTCACAGATATGCATGGTGGGTG 960 Query 977 ATAGATTGGACACTGACATTTTATTCGGGCAGAATGGCGGTTGTAAGACTCTACTCGTCC 1036 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 961 ATAGATTGGACACTGATATTTTATTCGGGCAGAATGGCGGATGTAAAACTCTGCTCGTCC 1020 Query 1037 TCTCGGGTGTTACTTCAATCTCTATGTTGGAAAGCCCTGAGAACAAGATACAACCAGATT 1096 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCTCGGGTGTCACTTCAATCTCAATGTTGGAAAGCCCTGAGAACAAGATACAACCAGATT 1080 Query 1097 TCTACACCAGCAAGATCTCCGATTTTCTGTCTCCGAAAGCCGCAACTGTATAATC 1151 ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct 1081 TCTACACCAGCAAAATCTCCGATTTTCTGTCCCCGAAAGCAGCAACTGTATAATC 1135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5