BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36940.1
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947314 jgi|Araly1|947314|scaffold_703543.1 2689 0.0
Ahg475412 jgi|Araly1|475412|fgenesh2_kg.2__542__AT1G58030.1 1066 0.0
Ahg340533 jgi|Araly1|340533|fgenesh1_pg.C_scaffold_3000296 331 1e-89
> Ahg947314 jgi|Araly1|947314|scaffold_703543.1
Length=1876
Score = 2689 bits (1456), Expect = 0.0
Identities = 1769/1914 (92%), Gaps = 46/1914 (2%)
Strand=Plus/Plus
Query 101 TTGTTGTTTAAATGGGTTTTATGGTGAATTCGCAAAATGAAGGTGGTGTTGGTGGTGACC 160
|||| |||| ||||||||||||||||||| ||||||| |||| | | | | ||||| |||
Sbjct 1 TTGTCGTTTTAATGGGTTTTATGGTGAATACGCAAAACGAAGAT-G-G-TAGTGGTAACC 57
Query 161 ATTCAT-GGGTTGTTTAAGAAGCTTAGTAAGAAGGAAACAATTCGACTCTTCAAATGGCA 219
|||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 58 ATTCATGGGGTTGCTTAAGAAATTTAGTAAGAAGGAAACAAGTCGACTCTTCAAATGGCA 117
Query 220 AAGCAGAGACTCATCATCATCACCAACAGCTTGCAAAAGCGTTGACCTTTCCTCACTTGA 279
|| |||||| | ||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 118 AAACAGAGA--C-TCATCATCACCAACAACTCGCAAAAGCTTTGACCTTTCCTCACTTGA 174
Query 280 TTGCCATTGGTGTTGGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAACAGTAG 339
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 175 TTGCCGTTGGTGTTGGATCAACAATAGGAGCAGGGGTTTATATTCTTGTGGGAACAGTGG 234
Query 340 CTAGAGAGCATTCAGGACCTGCTCTTGCTTTATCCTTCCTTATAGCTGGAATTTCTGCTG 399
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 235 CTAGAGAGCATTCAGGACCTGCTCTTGCTTTTTCCTTCCTTATAGCTGGAATTTCTGCTG 294
Query 400 CCCTTTCTGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCCTCTGCTGGGAGTGCCT 459
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 295 CGCTTTCTGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCTTCAGCTGGGAGTGCCT 354
Query 460 ATCATTATTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGCGCTGA 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 355 ATCATTATTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGTGCTGA 414
Query 520 TTTTGGAATACACAATTGGTGGTTCAACAGTTGCCCGCGGCATATCTCCAAATCTGGCAA 579
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 415 TTTTGGAATACACAATTGGTGGTTCAACAGTAGCTCGTGGCATATCTCCAAATCTGGCAA 474
Query 580 TGATTTTCGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCC 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGATTTTCGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCC 534
Query 640 TTGATATTGTTGTTGACCCGTGTGCTGCTGTGCTAGTGTTCATTGTAACAGGACT-TTGT 698
| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| || |||
Sbjct 535 TCGATATTGTTGTTGACCCATGTGCGGCTGTACTAGTGTTCATTGTAACAGGGCTCTTG- 593
Query 699 TGCCTTGGAGTAAAGGAGAGCACATTTGCTCAGGGAATTGTAACAACAGCAAATGTCTTT 758
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGCCTTGGAGTAAAAGAGAGCACATTTGCTCAGGGAATTGTAACAACAGCAAATGTCTTT 653
Query 759 GTCATGATATTTGTCATAGTAGCTGGAAGCTATTTGTGTTTCAAGACAGGTTGGGTTGGT 818
|||||| ||||||||||||||| ||| || ||| ||||||||||||| || ||||| |||
Sbjct 654 GTCATGCTATTTGTCATAGTAGTTGGTAGTTATCTGTGTTTCAAGACTGGCTGGGTAGGT 713
Query 819 TATGAACTTCCAACGGGGTATTTTCCTTACGGGGTTGATGGAATGCTTACTGGATCTGCT 878
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 714 TATGAACTTCCAACGGGGTATTTTCCGTATGGGGTTGATGGAATGCTTACTGGATCTGCT 773
Query 879 ACTGTCTTCTTTGCCTACATCGGGTTTGATACAGTTGCAAGTATGGCAGAGGAGGTGAAA 938
|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 774 ACTGTCTTCTTTGCGTACATCGGGTTTGATTCAGTTTCAAGTATGGCAGAGGAGGTGAAA 833
Query 939 AATCCCCGGCGGGATTTACCGCTCGGTATTGGGATTTCGCTCCTGCTTTGTTGTTTGCTG 998
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 834 AATCCCCAGCGGGATTTACCGCTCGGTATTGGTCTTTCGCTCATGCTTTGTTGTTTGCTA 893
Query 999 TACATGATGGTGTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGAC 1058
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TACATGATGGTCTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGAC 953
Query 1059 ACTCCAATATCATCCGCATTTTCTAGTCATGGAATTCAATGGGCTGCATATTTGATAAAT 1118
||||||||||| || |||||| ||||||| |||||||||||||| ||||||||||||| |
Sbjct 954 ACTCCAATATCCTCTGCATTTGCTAGTCACGGAATTCAATGGGCCGCATATTTGATAACT 1013
Query 1119 TTAGGTGCTGTCATGGCTCTCTGTTCTGCATTAATGGGCTCCATTCTCCCTCAGCCGCGG 1178
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1014 TTAGGTGCTGTCATGGCTCTCTGTTCTGTTTTAATGGGCTCCATTCTCCCTCAGCCGCGG 1073
Query 1179 ATTCTGATGGCAATGGCTAGGGATGGTCTCTTGCCTTCATATTTCTCATATGTGAATCAA 1238
||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1074 ATTCTGATGGCAATGGCTAAGGATGGTCTCTTGCCTTCATTTTTCTCAAATGTGAATCAA 1133
Query 1239 CGCACGCAGGTTCCAATTAATGGCACCATAACCACTGGTGTTTGTGCAGCAATCTTAGCT 1298
|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1134 CGCACGCAGGTTCCTGTTAATGGCACCATAACAACTGGTGTTTGTGTAGCAATCTTAGCT 1193
Query 1299 TTCTTTATGGATGTTTCGCAACTGGCGGGAATGGTGAGTGTCGGGACACTTGTTGCATTT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTCTTTATGGATGTTTCGCAACTGGCGGGAATGGTGAGTGTCGGGACACTTGTTGCATTT 1253
Query 1359 ACAATGGTTGCAATATCATTGTTGATAGTCAGATATGTTGTTCCTCCAGATGAGGTACCT 1418
|||||||||||||||||| | || | | |||| | | | | || || |
Sbjct 1254 ACAATGGTTGCAATATCA--G-TG-T--T--GATA----G----T-C--A-GA--TA--T 1289
Query 1419 CTTCCCTCATCACTTCAAGAAAACTCATCCAGTCACGTCGGAACTTCCA-TCCGTAGTAA 1477
|| |||| || | ||||||||||||||||||||| |||||| | |||||||
Sbjct 1290 GTT-CCTC--CAGAT-GAGAAAACTCATCCAGTCACGT-----CTTCCAGT-AGTAGTAA 1339
Query 1478 ACAACCTTTACTTGGCAAAG-TGGATGATTCAGTTGTCGATAAGGAAAATGCTCCAGGAA 1536
||||||||||||| |||||| | |||| |||| |||| ||||||||||| |||| ||||
Sbjct 1340 ACAACCTTTACTTTGCAAAGCT-GATGCTTCAATTGTGGATAAGGAAAAAGCTCAAGGAG 1398
Query 1537 GTTGGGTTCTCAACaaaaaaaaCAGACGGAAATTTGCTGGTTGGAGCATTATGTTCACTT 1596
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1399 GTTGGGTTCTCAACAAAGAAAACAGAAGGAAACTTGCTGGTTGGAGCATTATGTTCACTT 1458
Query 1597 GTATTGGAAACTTCCTTTTAAGCTATGCAGCGTCAAGCTTCCTCTTGCCAGGACTCCTCC 1656
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1459 GTACTGGAAACTTCCTTTTAAGCTATGCAGCGTCAAGCTTCCTCTTGCCAGGACTCCTAC 1518
Query 1657 GATATTCTCTATGTGGTGTTGGTGGATTGTTCCTTCTTGTCGGTTTGATTGTTCTGATTT 1716
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1519 GATACTCGCTATGTGGTGTTGGTGGATTGTTACTTCTTGTCGGTTTGATTGTTCTGAGTT 1578
Query 1717 GCATAGATCAGGATGATGCTAGACACAGTTTTGGGCATTCTGGAGGCTTCATTTGCCCGT 1776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 GCATAGATCAAGATGATGCTAGACACAGTTTTGGGCATTCTGGAGGCTTCATTTGCCCGT 1638
Query 1777 TTGTTCCGCTTTTGCCTATAGTTTGCATTCTTATCAACATGTATCTCTTGGTAAACCTTG 1836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1639 TTGTTCCGCTTTTGCCTATAGTCTGCATTCTTATCAACATGTATCTCTTGGTAAACCTTG 1698
Query 1837 GAGCTGCGACGTGGGTTCGTGTATCGGTTTGGCTGTTCCTCGGAGTGGTTGTTTACATTT 1896
|||||||||| |||| |||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 1699 GAGCTGCGACATGGGCTCGTGTATCGGTTTGGCTGTTCATTGGAGTGCTTGTTTACATTT 1758
Query 1897 TCTATGGGAGAAGAAACAGCTCTCTTGTGAATGCTGTTTATGTCTCCACTGCTCATCTCC 1956
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1759 TCTATGGCCGAAGAAACAGCTCTCTTGTGAATGCAGTTTATGTCTCCACTGCTCATGTCC 1818
Query 1957 AGGAGATTCGTCGCACTTCTGGACATTCTTTGGCTTAAGTCTACATGAAACCAT 2010
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1819 AGGAGATTCGTCGCACTTCTGGACATTCTTTGGCTTAACTCTACATGAAACCAT 1872
> Ahg475412 jgi|Araly1|475412|fgenesh2_kg.2__542__AT1G58030.1
Length=2192
Score = 1066 bits (577), Expect = 0.0
Identities = 1099/1345 (82%), Gaps = 59/1345 (4%)
Strand=Plus/Plus
Query 112 ATGGGTTTTATGGTGAATTCGCAAAATGAAGGTGGTGTTGGTGGTGACCATTCAT-GGGT 170
||||||||| ||||| || ||||||| ||| | | ||| | || ||||||| ||||
Sbjct 167 ATGGGTTTTTTGGTGGATACGCAAAAGGAA----G-G-AGGT-G-GA-CATTCATGGGGT 217
Query 171 T--GTTTAAGAAGCTTAGTAAGAAGGAAACAATTCGACTCTTCAAATGGCAAAGCAGAGA 228
| | || ||||| || || |||||||||||| |||||||| | |||||| | | |
Sbjct 218 TACG-TT-AGAAGTTTGGTTAGAAGGAAACAAGTCGACTCTGCTAATGGC----C--A-A 268
Query 229 CTCATCATCATCACCAACAGCTTGCAAAAGCGTTGACCT-TTCCTCA-CTTGATTGCCAT 286
|| |||| ||||| | | ||||| ||||| | | || ||||||| || | |||| ||
Sbjct 269 -TC-TCATGGTCACC-A-A-CTTGCTAAAGCCCTCA-CTGTTCCTCATCTCG-TTGCAAT 321
Query 287 TGGTGTTGGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAACAGTAGCTAGAGA 346
|||||||||| ||||||| ||||| || |||||||||||||| |||||||| || |||||
Sbjct 322 TGGTGTTGGAGCAACAATAGGAGCTGGAGTTTATATTCTTGTAGGAACAGTTGCGAGAGA 381
Query 347 GCATTCAGGACCTGCTCTTGCTTTATCCTTCCTTATAGCTGGAATTTCTGCTGCCCTTTC 406
||||||||||||| |||||||||| || || ||||| ||||||||| |||||| ||| ||
Sbjct 382 GCATTCAGGACCTTCTCTTGCTTTGTCTTTTCTTATTGCTGGAATTGCTGCTGGCCTCTC 441
Query 407 TGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCCTCTGCTGGGAGTGCCTATCATTA 466
||||||||||||||| || || |||||||||| ||| || ||||||||||| ||||| ||
Sbjct 442 TGCGTTTTGTTATGCTGAGCTCTCTAGTCGTTGTCCTTCAGCTGGGAGTGCGTATCACTA 501
Query 467 TTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGCGCTGATTTTGGA 526
||| ||||| || |||||||||||||||||||| | || || |||||| ||||| ||||
Sbjct 502 TTCCTACATATGTGTTGGTGAAGGTGTTGCGTGGATAATCGGTTGGGCGTTGATTCTGGA 561
Query 527 ATACACAATTGGTGGTTCAACAGTTGCCCGCGGCATATCTCCAAATCTGGCAATGATTTT 586
||| || |||||||| ||| | |||||||| ||||| || |||||||||||| |||||||
Sbjct 562 ATATACGATTGGTGGGTCAGCTGTTGCCCGTGGCATTTCCCCAAATCTGGCATTGATTTT 621
Query 587 CGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCCTTGATAT 646
|||||||||||| || ||||| |||| ||||| || || || ||||||||| ||||| |
Sbjct 622 TGGTGGTGAAGATGGTTTGCCTGCAATTTTAGCGCGCCACCAGATCCCAGGCTTTGATGT 681
Query 647 TGTTGTTGACCCGTGTGCTGCTGTGCTAGTGTTCATTGTAACAGGAC-TTTGTTGCCTTG 705
||||||||| || ||||||||| | || || ||| ||||||| || | |||| ||| | |
Sbjct 682 TGTTGTTGATCCATGTGCTGCTATTCTTGTATTCGTTGTAACTGGCCTTTTG-TGCATGG 740
Query 706 GAGTAAAGGAGAGCACATTTGCTCAGGGAATTGTAACAACAG-CAAATGTCTTTGTCATG 764
|| ||||||||||||||||||||||||||||||| || || ||| ||| | |||| ||
Sbjct 741 GAATAAAGGAGAGCACATTTGCTCAGGGAATTGTTACTGCAATCAA-TGTGTGTGTCTTG 799
Query 765 ATATTTGTCATAGTAGCTGGAAGCTATTTGTGTTTCAAGACAGGTTGGGTTGGTTATGAA 824
||||||||||||||||||| || |||||| | |||||||||||||||| ||||||||||
Sbjct 800 TTATTTGTCATAGTAGCTGGCAGTTATTTGGGCTTCAAGACAGGTTGGGCTGGTTATGAA 859
Query 825 CTTCCAACGGGGTAT-TTTCC-TTACGGGGTTGATGGAATGCTTACTGGATCTGCTACTG 882
||| |||| |||| | ||||| || ||| || ||||||||| || |||| |||||||| |
Sbjct 860 CTTTCAACAGGGT-TCTTTCCATT-CGGAGTAGATGGAATGTTTGCTGGTTCTGCTACAG 917
Query 883 TCTTCTTTGCCTACATCGGGTTTGATACAGTTGCAAGTATGGCAGAGGAGGTGAAAAATC 942
|||| ||||| | ||| ||||||||| | |||||||||| ||||||||||| | |||||
Sbjct 918 TCTTTTTTGCATTCATTGGGTTTGATTCGGTTGCAAGTACCGCAGAGGAGGTTAGAAATC 977
Query 943 CCCGGCGGGATTTACCGCTCGGTATTGGGATTTCGCTCCTGCTT-TGTTGTT-TGCTGTA 1000
||| |||||||||||| | |||||||| || | ||| || || ||||||| | || ||
Sbjct 978 CCCAACGGGATTTACCGATTGGTATTGGTCTTGCTCTCTTG-TTATGTTGTTCT-CTCTA 1035
Query 1001 CATGATGGTGTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGACAC 1060
||||||||| || | ||||||||||||||| | || || ||||| ||||| ||||||||
Sbjct 1036 CATGATGGTCTCCATAGTTATTGTTGGTTTAATTCCTTACTATGCAATGGATCCTGACAC 1095
Query 1061 TCCAATATCATCCGCATTTTCTAGTCATGGA-ATTCAATGGGCTGCATATTTGATAAATT 1119
|| ||||| || ||||| ||||||||| | || |||||||||| ||| || |||| ||
Sbjct 1096 CCCGATATCCTCTGCATTCGCTAGTCATG-ACATGCAATGGGCTGTATACTTAATAACTT 1154
Query 1120 TAGGTGCTGTCATGGCTCTCTGTTCTGCATTAATGGGCT-CCATTCTCCCTCAGCCGCGG 1178
|||| ||||||||||| ||||| || || |||||||| | || ||||||||||||| ||
Sbjct 1155 TAGGAGCTGTCATGGCACTCTGCTCAGCTTTAATGGG-TGCCCTTCTCCCTCAGCCACGA 1213
Query 1179 ATTCTGATGGCAATGGCTAGGGATGGTCT-CTTGCCTTCATATTTCT-CATATGTGAATC 1236
||||||||||||||||||||||||||||| || |||||| ||||| | || | | |||
Sbjct 1214 ATTCTGATGGCAATGGCTAGGGATGGTCTGCT-GCCTTC-TATTTTTTCAGACATTAATA 1271
Query 1237 AACGCACGCAGGTTCCAATTAATGGCA-CCATAACCACTGGTGTT-TGTGCAGCAATCTT 1294
||||||| |||||||| |||| | || || | | ||||| ||| ||||| |||| |||
Sbjct 1272 AACGCACACAGGTTCCGGTTAAAG-CAACCGTGGCAACTGG-GTTGTGTGCTGCAACCTT 1329
Query 1295 AGCTTTCTTTATGGATGTTTCGCAACTGGC-GGGAATGGTGAGTGTCGGGACACTTGTTG 1353
||| ||||||||||||||||| || || || |||| |||||||||| ||||||||| | |
Sbjct 1330 AGCGTTCTTTATGGATGTTTCACAGCTCGCAGGGA-TGGTGAGTGTTGGGACACTTCTGG 1388
Query 1354 CATTTACAATGGTTGCAATATCATTGTTGATAGTCAGATATGTTGTTCCTCCAGATGAGG 1413
||||||||||||| ||| ||||| |||||||| | ||||| ||| ||||||||||||
Sbjct 1389 CATTTACAATGGTGGCAGTATCAGTGTTGATACTAAGATACGTT---CCTCCAGATGAGC 1445
Query 1414 TACCTCTTCCCTCATCACTTCAAGA 1438
||||||||| ||||| ||||||||
Sbjct 1446 AACCTCTTCCGTCATCTCTTCAAGA 1470
> Ahg340533 jgi|Araly1|340533|fgenesh1_pg.C_scaffold_3000296
Length=1914
Score = 331 bits (179), Expect = 1e-89
Identities = 641/857 (75%), Gaps = 59/857 (7%)
Strand=Plus/Plus
Query 275 CTTGATTGCCATTGGTGTT-GGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAA 333
|||| | || ||||| ||| ||| |||||||||||||||| || ||||||||||||||||
Sbjct 97 CTTG-TCGCTATTGGAGTTGGGA-CAACAATTGGAGCAGGAGTGTATATTCTTGTGGGAA 154
Query 334 CAGTAGCTAGAGAGCATTCAGGACCTGCTCTTGCTTTATCCTTCCTT-ATAGCTGGAATT 392
|||||||||||||||| ||||||||||||||||| |||| ||| || || ||||| |
Sbjct 155 CAGTAGCTAGAGAGCACACAGGACCTGCTCTTGCTGTATCATTC-TTCATTGCTGGTGTA 213
Query 393 TCTGCTGCCCTTTCTGCGTTTTGTTATGCGGAACTAT-CTAGTCGTTTTCCCTCTGCTGG 451
||||||| || || || | ||||||||| || || | || ||||| ||| ||||||||
Sbjct 214 GCTGCTGCTCTCTCGGCCTGTTGTTATGCTGAGCT-TGCTTCTCGTTGTCCATCTGCTGG 272
Query 452 GAGTGCCTATCATTATTCTTACATTTG-CATTGGTGAAGGTG-TTGCGTGGTTGATTGGC 509
|||||| ||||||||| | ||||| || | |||| ||||| | |||| |||||| ||||
Sbjct 273 GAGTGCTTATCATTATGCATACATATGTC-TTGGAGAAGG-GATTGCTTGGTTGGTTGGT 330
Query 510 TGGGCGCTGATTTTGGAATACACAATTGGTGGTTCAAC-AGTTGCCCGCGGCATATCTCC 568
||||||||| | ||||| || ||||||||||| ||| | | ||||||| |||||| ||||
Sbjct 331 TGGGCGCTGGTGTTGGATTATACAATTGGTGGATCAGCCA-TTGCCCGTGGCATAACTCC 389
Query 569 AAATCTGGCAATGATTTTC-GGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCAT- 626
|||||||||| | ||||| |||||| || || ||| | |||||||| ||
Sbjct 390 AAATCTGGCA-TCATTTTTTGGTGGTTTGGACAAACTTCCTGTGTTCTTAGCTCGACAAA 448
Query 627 CAA-ATCCCAGGCCTTGATATTGTTGTTGACCCGTGTGCTGCTGTGCT-AGTGTTCATTG 684
| | | ||| || ||| |||||| ||||| || ||||| || | | | | | ||||
Sbjct 449 CTATA-CCCGGGG-TTGGTATTGTGGTTGATCCATGTGCAGCACTTTTGATTATG-ATTG 505
Query 685 TAAC-AGGACT--T-TGTTGCCTTGG-AGTAAAGGAGAGCACATTTGCT-CAGGGAATTG 738
| || | ||| | |||| |||| | |||||||||| |||| | | || | |||||
Sbjct 506 TCACGAT-ACTACTATGTT---TTGGGA-TAAAGGAGAGTTCATTAG-TACAAGCAATTG 559
Query 739 TAACAACAGCAAATGTCTTTGTCA--T-GATATTTG-TCATAGTAGCTGGAAGCTATTTG 794
||||| ||| ||||| || | || | | | ||| ||||||||| ||| | |||||
Sbjct 560 TAACATCAGTGAATGT-TT-G-CACCTTGGT-TTTCATCATAGTAGTTGGTGGATATTTA 615
Query 795 TGTTT-CAAGACAGGTTGGGTTGGTTATGAACTTCCAACG-GGGTATTTTCCTTACGGGG 852
| || |||||| || |||||||| ||||| ||||| | | ||||||||||||| ||
Sbjct 616 -GCTTGCAAGACCGGATGGGTTGGATATGATCTTCCGA-GTGGGTATTTTCCTTTTGGAC 673
Query 853 TTGATGGAATGCTTACTGGATCTGCTACT-GTCTTCTT-TGCCTACATCGGGTTTGATAC 910
| |||| || ||| | |||||||||| | || ||||| | | ||||| || ||||||||
Sbjct 674 TAAATGGGATACTTGCCGGATCTGCTA-TAGTATTCTTCT-CATACATTGGATTTGATAC 731
Query 911 AGTTGCAAGTATGGCAGAGGAGGTGAAAAATCCCCGGCGGGAT-TTACCGCTCGGTATTG 969
|| | |||| ||| ||||||||||||||||| | ||||| || || | || || |
Sbjct 732 TGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTT-CCATTGGGAATCG 790
Query 970 GGATTTCGCTCCTGCTTTGTTG--TTTGCTGTACATGATGGTGTCTGTTGTTATTGTTGG 1027
||||| | | ||| | || || ||| | || ||| | | || || |||||||||||
Sbjct 791 GGATTGCATTACTGATATGCTGCATTT--TATATATGCTTTTATCAGTAGTTATTGTTGG 848
Query 1028 TTTAGTGCCGTATTATGCTATGGAC-CCTGACACTCCAATATCATCCGCATTTTCTAGTC 1086
||||| || || ||| | || || ||||| ||||| || || || |||||| || |
Sbjct 849 ATTAGTCCCATACTATTC-ATTGAATCCTGATACTCCTATCTCCTCTGCATTTGG-AGAC 906
Query 1087 A-TGGAATTCAATGGGC 1102
| ||| || ||||||||
Sbjct 907 AGTGGGATGCAATGGGC 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84369892675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5