BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37260.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493689 jgi|Araly1|493689|fgenesh2_kg.7__3122__AT5G37260.1 1432 0.0
> Ahg493689 jgi|Araly1|493689|fgenesh2_kg.7__3122__AT5G37260.1
Length=979
Score = 1432 bits (775), Expect = 0.0
Identities = 922/990 (93%), Gaps = 22/990 (2%)
Strand=Plus/Plus
Query 1 ATAAACAACAActctctcaccaatctcaaaacaattctctctctctttattcttcttctt 60
||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 1 ATAAACAACAACTCTCTTACCAATCTC-AAAC-ATT-TCTCTCTCTTTATTCTTCTTCTT 57
Query 61 cagcttcagatttcagatcttaaatcttcaagtcttcttcttcttcttctGCAACCATGG 120
|| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 58 CAACATCAGATTTCAGATCTTAAATCTTCAAG---TCTTCTTCTTCTTCTGCGACCATGG 114
Query 121 CTATGCAGGAACGTTGTGAGAGTTTATGTTCTGATGAACTTATATCTTCCTCAGATGCCT 180
|||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 115 CTATGCAGGAACGTTGTGAGAGTTTATG---TGATGAGCTTATATCTTCCACAGATGCCT 171
Query 181 TTTACCTCAAGACAAGAAAGCCTTATACCATCACTAAACAAAGAGAGAAATGGACAGAAG 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 172 TTTACCTCAAGACAAGAAAGCCTTATACCATTACTAAACAAAGAGAGAAATGGACAGAAG 231
Query 241 CAGAGCATGAGAAGTTTGTAGAAGCATTGAAACTCTATGGCAGAGCTTGGAGACGAATCG 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 232 CAGAGCATGAGAAGTTTGTAGAAGCTTTGAAACTCTATGGCAGAGCTTGGAGACGAATCG 291
Query 301 AAGAACATGTTGGAACAAAAACTGCAGTTCAGATTCGAAGCCATGCGCAGAAGTTCTTT- 359
||||||||||||||||||| || || |||||||||||||| ||||| |||||||| |||
Sbjct 292 AAGAACATGTTGGAACAAAGACCGCGGTTCAGATTCGAAGTCATGCTCAGAAGTT-TTTC 350
Query 360 ACTAAGGTTGCTCGCGATTTTGGTGTTAGCTCTGAGTCCATTGAGATCCCGCCTCCAAGG 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 351 ACTAAGGTTGCTCGCGATTTTGGTGTTAGCTCTGAGTCCATTGAGATTCCGCCTCCACGG 410
Query 420 CC-AAAGAGAAAGCCGATGCATCCTTACCCTAGAAAGCTTGTGATTCCTGATGCAAAAGA 478
|| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 411 CCGAAA-AGAAAGCCGATGCATCCTTACCCTAGGAAGCTTGTGATTCCGGATGCAAAAGA 469
Query 479 GATGGTATACGCTGAACTAACCGGATCCAAGCTGATTCAGGATGAAGATAACCGATCTCC 538
||||| ||| | |||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 470 GATGGCATATGTTGAACTAACCGGCTCCAAGATGGTTCAGGATGAAGATAACCGATCTCC 529
Query 539 AACATCGGTTTTATCAGCTCATGGCTCAGATGGATTAGGTTCCATTGGTTCAAATTCACC 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AACATCGGTTTTATCTGCTCATGGCTCAGATGGATTAGGTTCCATTGGTTCAAATTCACC 589
Query 599 TAACTCTTCTTCAGCTGAGTTATCATCTCACACAGAGGAATCATTGTCTCTAGAAGCAGA 658
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 590 TAACTCTTCTTCAGCTGAGTTATCATCTCACACAGAGGAATCACTGTCTCCAGAAGCAGA 649
Query 659 GACCAAACAGAGCCTTAAGCTCTTTGGAAAAACTTTTGTAGTTGGTGATTACAACTCTTC 718
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 650 GACCAAACAAAGCCTTAAACTCTTTGGAAAGACTTTTGTAGTTGGTGATTACAACTCTTC 709
Query 719 AATGAGTTGTGATGATTCTGAAGATGGCAAGAAGAAGCTATACTCAGAAACACAGTCTCT 778
|| || | |||||||||||||||| ||||||||||||| ||||||||||||||||| |
Sbjct 710 AACAAGCTCTGATGATTCTGAAGATCTCAAGAAGAAGCTAGACTCAGAAACACAGTCTGT 769
Query 779 TCAATGTTCTTCTTCTACTTCAGAAAACGCTGAAACAGAAGTG----G-T---A-GTGTC 829
|||||||||||||| |||||| ||||||||||||||||||||| | | | || ||
Sbjct 770 TCAATGTTCTTCTTGTACTTCGGAAAACGCTGAAACAGAAGTGACACGATTGGAAGTATC 829
Query 830 GGAGTTCAAAAGAAGTGAGAGATCAGCTTTCTCTCAGTTAAAATCGTCGGTGACTGAGAT 889
|||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 830 GGAGTTTAAAAGAAGCGAGAGATCAGCTTTCTCTCAGTTGAAATCGACGGTGACTGAGAT 889
Query 890 GAACAACATGAGAGGGTTCATGCCTTACAAAAAGAGAGTAAAGGTGGAAGAAAACATTGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAACAACATGAGAGGGTTCATGCCTTACAAAAAGAGAGTAAAGGTGGAAGAAAACATTGA 949
Query 950 CAATGTAAAATTATCATATCCTTTGTGGTG 979
|||||||||| | |||||||||||||||||
Sbjct 950 CAATGTAAAAATGTCATATCCTTTGTGGTG 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5