BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37300.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330267 jgi|Araly1|330267|fgenesh1_pm.C_scaffold_7002494 2224 0.0
> Ahg330267 jgi|Araly1|330267|fgenesh1_pm.C_scaffold_7002494
Length=1503
Score = 2224 bits (1204), Expect = 0.0
Identities = 1382/1468 (94%), Gaps = 11/1468 (1%)
Strand=Plus/Plus
Query 1 ATCCTTAAACTGACTATGAAAGCGGAAAAAGTTAT-G-GAGAG-AGAGATCGAGACAACG 57
|||||||||| ||||||||| ||||||| ||||| | ||||| |||||||||||| | |
Sbjct 40 ATCCTTAAACCAACTATGAAAACGGAAAATGTTATGGAGAGAGAAGAGATCGAGACGATG 99
Query 58 CCAATAGAGCCTCTTAGCCCAATGTCACATATGCTAAGTTCGCCAAATTTCTTCATTGTC 117
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 CCAATGGAGCCACTTAGCCCAATGTCACATATGCTAAGTTCGCCAAATTTCTTCATTGTG 159
Query 118 ATAACTTTTGGGTTTAAAACTCGATGCAACCGATCGGCCTTTGTTGATGGCATCAACAAC 177
|||||||||||||||||| | ||||||||| ||||||||||||||| |||||||| |||
Sbjct 160 ATAACTTTTGGGTTTAAAGTTAGATGCAACCCATCGGCCTTTGTTGAAGGCATCAAGAAC 219
Query 178 ACATTGATCAATGCTCCCAGATTCTCCAGTAAAATGGAGATAAATTATAAGAAAAAAGGA 237
||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||||
Sbjct 220 TCATTGATCAATGCTCCCAGATTCTCTAGCAAAATGGAGATAGATTATAAGAGAAAAGGA 279
Query 238 GAACCGGTCTGGATTCCTGTTAAACTTCGAGTAGATGATCATATTATTGTGCCGGATCTT 297
|| ||||||||||||||||||||| |||||||||| |||||| |||||||||| |||| |
Sbjct 280 GACCCGGTCTGGATTCCTGTTAAAGTTCGAGTAGAAGATCATGTTATTGTGCCAGATCCT 339
Query 298 GAATATTCCAACATTCAAAATCCTGATCAGTTCGTAGAAGACTATACTTCAAACATAGCT 357
||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||| |||
Sbjct 340 GAATATTCCAACATTGAAAATCCTGATCATTTCATAGAAGACTATACATCAAACATTGCT 399
Query 358 AATATTCCAATGGACATGTCCAAACCTCTTTGGGAATTTCATTTACTCAACATGAAGACA 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 400 AATATTCCAATGGACATGTCAAAACCTCTTTGGGAATTTCATTTACTCAACATAAAGACA 459
Query 418 TCAAAAGCAGAATCTTTGGCTATAGTAAAAATACATCACTCCATTGGTGATGGGATGTCT 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 460 TCAAAAGCAGAATCTTTGGCTATAGTAAAAATACATCACTCAATTGGTGATGGAATGTCT 519
Query 478 CTTATGTCCCTACTACTTGCTTGTTCACGAAAAATATCAGACCCTGACGCGCTAGTTTCT 537
|||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 520 CTTATGTCACTTTTACTTGCTTGTTCACGAAAAACATCAGACCCTGACGCGCTAATTTCT 579
Query 538 AATACCACGGCTACAAA-AAAGCCAGCTGATTCCATGGCTTGGTGGTTGTTTGTTGGGTT 596
| ||||||||||||||| ||| || | |||||||||||||||||||||||||||||| ||
Sbjct 580 ACTACCACGGCTACAAAGAAA-CCCGTTGATTCCATGGCTTGGTGGTTGTTTGTTGGATT 638
Query 597 TTGGTTTATGATAAGAGTCACCTTCACCACTATTGTTGAGTTTTCCAAGTTAATGCTTAC 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 639 TTGGTTTATGATAAGAGTCACCTTCACCACTATTGTTGAATTTTCCAAGTTAATGCTTAC 698
Query 657 AGTATGCTTTTTG-GAAGATACCAAAAACCCTCTTATGGGTAACCCGAGTGATGGATTTC 715
| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 699 AATATGCTTTTTGCG-AGATACCAAAAACCCTCTTATGGGTAATCCGAGTGATGGATTTC 757
Query 716 AATCTTGGAAGGTTGTCCATCGGATAATAAGTTTTGAGGATGTCAAGTTAATAAAGGACA 775
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 758 AATCTTGGAAGGTTGTCCATCGGATAATAAGTTTTGAGGATGTCAAGTTAGTGAAGGACA 817
Query 776 CAATGAACATGAAGGTGAATGATGTTCTTCTTGGAATGACACAAGCAGGTCTTTCAAGAT 835
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 818 CAATGAACATGAAGGTGAATGATGTTCTTCTTGGAATGACAGAAGCAGGTCTTTCAAGAT 877
Query 836 ATTTGAGTAGCAAATATGATGGATCAACGGCTGAGAAGAAAAAGATCTTAGAAAAACTCC 895
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 878 ATTTGAGTAGCAAATATGATGGATCAACAGCCGAGAAGAAAAAGATCTTAGAAAAACTCC 937
Query 896 GTGTTCGTGGTGCCGTAGCTATAAACTTAAGACCAGCAACAAAGATAGAGGATTTGGCTG 955
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GTGTTCGTGGTGCTGTAGCTATAAACTTAAGACCAGCAACAAAGATAGAGGATTTGGCTG 997
Query 956 ATATGATGGCGAAGGGTTCAAAGTGTAGATGGGGAAACTTCATAGGAACGGTTATATTTC 1015
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 998 ATATGATGGCGAAGGGTTCAAAGTGTAGATGGGGAAACTTCATTGGAACAATTATATTTC 1057
Query 1016 CGTTGTGGGTGAAATCAGAGAAAGATCCGTTGGAGTACATTCGACGAGCCAAAGCTACGA 1075
| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1058 CTTTGTGGGTGAAACCAGAGAAGGATCCATTGGAGTACATTCGACGAGCCAAAGCTACGA 1117
Query 1076 TGGATAGGaaaaaaaTATCTCTGGAAGCtttttttttCTATGGAATTATTAAATTCACCT 1135
|||||||||| ||||||||| ||||||||||| |||||||||| || |||||||||||||
Sbjct 1118 TGGATAGGAAGAAAATATCTTTGGAAGCTTTTATTTTCTATGGCATCATTAAATTCACCT 1177
Query 1136 TGAAATTTTTTGGAGGAAAGGCAGTAGAAGCTTTTGGAAAGAGGATATTTGGTCACACAT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TGAAATTTTTTGGAGGAAAGGCAGTAGAAGCTTTTGGAAAGAGGATATTTGGTCACACAT 1237
Query 1196 CATTGGCATTTTCAAATGTGAAAGGTCCCGATGAAGAAATAAGtttttttCACCATCCGA 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1238 CATTGGCATTTTCAAATGTGAAAGGTCCCGATGAAGAAATAAGTTTTTTTCATCATCCGA 1297
Query 1256 TTTCATATATCGCAGGAAGTGCATTAGTTGGAGCACAAGCTCTCAATATCCATTTTATAA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTTCATATATCGCAGGAAGTGCATTAGTTGGAGCACAAGCTCTCAATATCCATTTTATAA 1357
Query 1316 GCTACGTAGACAAGATTGTCATCAATCTAGCTGTTGACACAACAACGATT-CAAGATCCT 1374
||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 1358 GCTACGTAGACAAGATTGTCATCAATCTAGCTGTTGATACAACAACGATTGCA-GATCCT 1416
Query 1375 AATCGACTATGTGATGATATGGTGGAAGCACTTGAGATCATCAAATCTGCCACACAAGGG 1434
|||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 1417 CATCGACTATGCGATGATATGGTAGAAGCACTCGAGATAATCAAATCTGCCACACA-GGA 1475
Query 1435 GAAAT-ATTTCACAAAACGGAAGTTTGA 1461
|||| |||||| |||||||||||||||
Sbjct 1476 GAAAAGATTTCATAAAACGGAAGTTTGA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5